Wall clock time and date at job start Fri Apr 10 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48500 * 109.47053 * 270.00456 * 3 2 1 5 5 H 1.48501 * 109.46938 * 30.00408 * 3 2 1 6 6 H 1.48503 * 109.47313 * 150.00324 * 3 2 1 7 7 C 1.38953 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99755 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99957 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99756 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99844 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99665 * 179.97438 * 10 9 7 13 13 N 1.46503 * 109.46887 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00204 * 179.97438 * 13 12 10 15 15 O 1.21588 * 119.99769 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00537 * 180.02562 * 14 13 12 17 17 C 1.47023 * 125.64409 * 359.97438 * 16 14 13 18 18 C 1.54322 * 107.27149 * 178.95789 * 17 16 14 19 19 C 1.55282 * 103.00430 * 337.88615 * 18 17 16 20 20 H 1.09001 * 110.95548 * 277.33125 * 19 18 17 21 21 C 1.52999 * 111.09626 * 153.45081 * 19 18 17 22 22 O 1.43755 * 109.63071 * 305.25997 * 21 19 18 23 23 C 1.44588 * 104.91946 * 215.71473 * 22 21 19 24 24 C 1.54919 * 101.63594 * 36.26557 * 23 22 21 25 25 O 1.43375 * 109.62937 * 186.04844 * 21 19 18 26 26 C 1.47419 * 125.65006 * 180.02562 * 16 14 13 27 27 H 0.96992 * 120.00146 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99886 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46783 * 60.00656 * 12 10 9 30 30 H 1.08999 * 109.47825 * 300.00002 * 12 10 9 31 31 H 0.96999 * 119.99814 * 0.02562 * 13 12 10 32 32 H 1.09009 * 109.87859 * 298.37607 * 17 16 14 33 33 H 1.09003 * 109.88678 * 59.38281 * 17 16 14 34 34 H 1.09006 * 110.71959 * 96.16400 * 18 17 16 35 35 H 1.08997 * 110.71908 * 219.26179 * 18 17 16 36 36 H 1.08996 * 109.63101 * 65.65754 * 21 19 18 37 37 H 1.09002 * 111.08746 * 278.16431 * 23 22 21 38 38 H 1.08994 * 110.98198 * 154.33447 * 23 22 21 39 39 H 1.08997 * 110.69394 * 205.95989 * 24 23 22 40 40 H 1.09005 * 110.83686 * 82.82990 * 24 23 22 41 41 H 1.09002 * 110.36926 * 322.95057 * 26 16 14 42 42 H 1.08995 * 110.36556 * 85.16341 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0539 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0001 12 6 5.5608 -2.3704 -0.0022 13 7 6.0492 -3.7516 -0.0014 14 6 7.3742 -3.9979 -0.0027 15 8 8.1643 -3.0737 -0.0041 16 7 7.8236 -5.2685 -0.0024 17 6 6.9829 -6.4747 -0.0002 18 6 7.9295 -7.6931 -0.0276 19 6 9.2412 -7.1034 -0.6131 20 1 9.1986 -7.0629 -1.7016 21 6 10.4606 -7.8993 -0.1435 22 8 10.4725 -7.9622 1.2926 23 6 11.8705 -7.9001 1.6564 24 6 12.4272 -6.9220 0.5918 25 8 11.6596 -7.2484 -0.5843 26 6 9.2395 -5.6792 -0.0032 27 1 -0.4850 0.8400 0.0004 28 1 3.8648 -0.3632 -0.0014 29 1 5.9247 -1.8562 0.8873 30 1 5.9235 -1.8569 -0.8927 31 1 5.4189 -4.4889 -0.0006 32 1 6.3726 -6.4994 0.9027 33 1 6.3412 -6.4810 -0.8814 34 1 8.0963 -8.0746 0.9798 35 1 7.5322 -8.4757 -0.6739 36 1 10.4196 -8.9082 -0.5540 37 1 12.3418 -8.8792 1.5710 38 1 11.9947 -7.4957 2.6609 39 1 13.4886 -7.1018 0.4212 40 1 12.2560 -5.8873 0.8887 41 1 9.8306 -5.0019 -0.6196 42 1 9.6285 -5.7016 1.0147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312659472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:44 Heat of formation + Delta-G solvation = -166.870777 kcal Electronic energy + Delta-G solvation = -26051.425809 eV Core-core repulsion = 22031.043723 eV Total energy + Delta-G solvation = -4020.382086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.80265 -41.14831 -40.24013 -38.45676 -36.30719 -35.99388 -35.37436 -33.86212 -33.41811 -30.85530 -30.01454 -29.10775 -26.62919 -25.50914 -24.25222 -23.71372 -21.56790 -21.39350 -21.10185 -20.57430 -19.36776 -18.15586 -17.86090 -17.57865 -17.55053 -16.96426 -16.84336 -16.74307 -16.13434 -15.87225 -15.49749 -15.27113 -14.94475 -14.69769 -14.50986 -14.36679 -14.16330 -14.02380 -13.93564 -13.72914 -13.66543 -13.35745 -12.96833 -12.74117 -12.47907 -12.45242 -12.04383 -12.00475 -11.70284 -11.59116 -11.47271 -11.14186 -10.67622 -10.60271 -10.38287 -10.30732 -9.58955 -8.46155 -6.08169 1.30785 1.33760 1.40876 1.45230 1.76629 2.01085 2.20040 2.47746 2.66453 2.91613 3.05758 3.09936 3.45395 3.57724 3.69723 3.86413 3.96995 4.05804 4.20216 4.23382 4.32683 4.34993 4.39488 4.40643 4.54592 4.59984 4.66695 4.76535 4.82678 4.87180 4.96418 5.05267 5.17502 5.24083 5.28826 5.48427 5.86726 5.94494 6.07703 6.47815 6.76708 6.83813 7.26434 7.41213 7.76345 8.70177 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.036219 B = 0.002350 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.887176 B =11914.251794 C =12402.853846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.577 5.577 10 C 0.447 3.553 11 O -0.614 6.614 12 C 0.137 3.863 13 N -0.724 5.724 14 C 0.720 3.280 15 O -0.629 6.629 16 N -0.637 5.637 17 C 0.091 3.909 18 C -0.106 4.106 19 C -0.112 4.112 20 H 0.107 0.893 21 C 0.247 3.753 22 O -0.390 6.390 23 C 0.015 3.985 24 C 0.013 3.987 25 O -0.401 6.401 26 C 0.139 3.861 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.409 0.591 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.818 -15.989 1.388 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.157 1.157 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.217 5.217 10 C 0.234 3.766 11 O -0.500 6.500 12 C 0.009 3.991 13 N -0.382 5.382 14 C 0.422 3.578 15 O -0.511 6.511 16 N -0.374 5.374 17 C -0.032 4.032 18 C -0.143 4.143 19 C -0.131 4.131 20 H 0.126 0.874 21 C 0.151 3.849 22 O -0.311 6.311 23 C -0.060 4.060 24 C -0.063 4.063 25 O -0.323 6.323 26 C 0.017 3.983 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.247 0.753 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 26.583 -15.790 1.322 30.948 hybrid contribution -0.517 0.896 0.091 1.038 sum 26.066 -14.895 1.413 30.055 Atomic orbital electron populations 1.69772 1.07986 1.29479 1.49200 1.26063 0.96447 1.02576 0.95701 0.85448 0.79560 0.77054 0.80090 1.18068 1.19741 1.15686 1.19030 0.80859 0.95313 1.50792 0.91771 1.41912 1.06183 1.07356 1.66226 1.20424 0.89858 0.83927 0.82394 1.90517 1.70719 1.32311 1.56410 1.20724 0.89483 0.83923 1.04992 1.44718 1.05318 1.08937 1.79240 1.15425 0.82044 0.82408 0.77949 1.90866 1.55901 1.43673 1.60695 1.47550 1.08867 1.03483 1.77504 1.22262 0.94414 0.84037 1.02451 1.22579 0.92120 0.96098 1.03522 1.22920 0.95043 0.93470 1.01674 0.87438 1.23978 0.84754 0.96037 0.80105 1.89192 1.26261 1.94884 1.20741 1.24562 0.80045 1.00519 1.00901 1.24407 0.98175 0.99588 0.84097 1.88894 1.32907 1.79396 1.31093 1.21960 0.80471 0.95234 1.00667 0.90887 0.77205 0.88091 0.87950 0.75329 0.91185 0.90780 0.89243 0.86964 0.87059 0.88700 0.85977 0.85999 0.91236 0.92169 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.53 13.96 21.66 0.30 -54.23 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 3 Si 0.96 38.50 27.73 68.60 1.90 40.40 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 7 C -0.33 -18.95 10.16 84.04 0.85 -18.09 16 8 H 0.06 4.32 7.39 -2.91 -0.02 4.30 16 9 N -0.58 -27.00 5.09 -306.98 -1.56 -28.56 16 10 C 0.45 20.01 7.85 87.66 0.69 20.70 16 11 O -0.61 -32.19 15.24 -3.06 -0.05 -32.23 16 12 C 0.14 4.81 6.15 85.63 0.53 5.34 16 13 N -0.72 -24.71 5.49 -482.29 -2.65 -27.36 16 14 C 0.72 24.55 8.49 179.05 1.52 26.07 16 15 O -0.63 -25.21 16.60 -3.99 -0.07 -25.28 16 16 N -0.64 -17.09 3.33 -829.71 -2.76 -19.85 16 17 C 0.09 1.82 6.15 86.73 0.53 2.35 16 18 C -0.11 -1.45 6.37 31.83 0.20 -1.25 16 19 C -0.11 -1.77 3.23 -9.35 -0.03 -1.80 16 20 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 21 C 0.25 3.36 3.83 71.98 0.28 3.64 16 22 O -0.39 -5.62 9.46 -126.21 -1.19 -6.81 16 23 C 0.02 0.13 7.95 72.64 0.58 0.71 16 24 C 0.01 0.14 8.07 72.64 0.59 0.72 16 25 O -0.40 -6.38 10.97 -126.21 -1.38 -7.76 16 26 C 0.14 3.22 6.09 86.86 0.53 3.75 16 27 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.39 15.47 5.76 -92.71 -0.53 14.93 16 29 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.41 13.91 6.42 -92.71 -0.60 13.32 16 32 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.25 7.23 -2.38 -0.02 1.24 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 42 H 0.06 1.53 7.31 -2.39 -0.02 1.51 16 Total: -1.00 -78.46 348.47 -0.85 -79.31 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -0.13 Total: 40.19 kcal Atomic # 6 Polarization: 35.45 SS G_CDS: 6.73 Total: 42.18 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -6.67 Total: -130.00 kcal Atomic # 8 Polarization: -69.39 SS G_CDS: -2.69 Total: -72.08 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.40 kcal Total: -78.46 -0.85 -79.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312659472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.557 kcal (2) G-P(sol) polarization free energy of solvation -78.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds