Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86801 * 119.99662 * 2 1 4 4 H 1.48504 * 109.46763 * 269.99972 * 3 2 1 5 5 H 1.48495 * 109.47339 * 29.99730 * 3 2 1 6 6 H 1.48499 * 109.46996 * 150.00329 * 3 2 1 7 7 C 1.38948 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99623 * 0.02562 * 7 2 1 9 9 N 1.37093 * 120.00162 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00142 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99649 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99800 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46765 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99993 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99762 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00126 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00245 * 185.03291 * 16 14 13 18 18 H 1.09002 * 109.46685 * 355.27306 * 17 16 14 19 19 C 1.53003 * 109.47126 * 235.28050 * 17 16 14 20 20 C 1.52995 * 109.47487 * 64.99399 * 19 17 16 21 21 O 1.42895 * 109.47183 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.47117 * 115.27548 * 17 16 14 23 23 C 1.54264 * 110.03043 * 55.73998 * 22 17 16 24 24 C 1.54896 * 104.19123 * 217.10172 * 23 22 17 25 25 C 1.54881 * 102.74683 * 37.94363 * 24 23 22 26 26 C 1.53876 * 110.03282 * 298.56859 * 22 17 16 27 27 H 0.97002 * 119.99929 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99751 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47285 * 60.00485 * 12 10 9 30 30 H 1.09004 * 109.47157 * 299.99944 * 12 10 9 31 31 H 0.96996 * 119.99638 * 359.97438 * 13 12 10 32 32 H 0.96998 * 120.00247 * 5.03427 * 16 14 13 33 33 H 1.08995 * 109.47287 * 185.00113 * 19 17 16 34 34 H 1.09000 * 109.47047 * 304.99509 * 19 17 16 35 35 H 1.08995 * 109.47440 * 300.00621 * 20 19 17 36 36 H 1.09000 * 109.46887 * 60.00012 * 20 19 17 37 37 H 0.96703 * 114.00214 * 180.02562 * 21 20 19 38 38 H 1.09003 * 110.01121 * 177.17830 * 22 17 16 39 39 H 1.08995 * 110.48766 * 335.77742 * 23 22 17 40 40 H 1.09003 * 110.48920 * 98.42817 * 23 22 17 41 41 H 1.09000 * 110.75542 * 279.62530 * 24 23 22 42 42 H 1.08996 * 110.90858 * 156.33128 * 24 23 22 43 43 H 1.09007 * 110.48497 * 203.37600 * 25 24 23 44 44 H 1.08998 * 110.60294 * 80.79150 * 25 24 23 45 45 H 1.08997 * 110.03203 * 238.57124 * 26 22 17 46 46 H 1.08998 * 110.03067 * 0.02562 * 26 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0539 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 7 6.0492 -3.7517 0.0017 14 6 7.3743 -3.9979 0.0013 15 8 8.1644 -3.0737 -0.0001 16 7 7.8235 -5.2685 0.0023 17 6 9.2593 -5.5377 0.1132 18 1 9.8076 -4.5958 0.1001 19 6 9.7080 -6.4053 -1.0645 20 6 9.5426 -5.6212 -2.3678 21 8 9.9610 -6.4317 -3.4677 22 6 9.5405 -6.2734 1.4249 23 6 8.6885 -7.5570 1.5039 24 6 8.2901 -7.6571 2.9974 25 6 8.0379 -6.1785 3.3836 26 6 9.1268 -5.3969 2.6200 27 1 -0.4850 0.8401 0.0004 28 1 3.8649 -0.3632 -0.0004 29 1 5.9242 -1.8558 0.8906 30 1 5.9241 -1.8573 -0.8894 31 1 5.4188 -4.4889 0.0024 32 1 7.1963 -6.0048 -0.0703 33 1 10.7550 -6.6794 -0.9358 34 1 9.0983 -7.3080 -1.1038 35 1 8.4955 -5.3470 -2.4966 36 1 10.1522 -4.7185 -2.3285 37 1 9.8838 -5.9973 -4.3282 38 1 10.5995 -6.5225 1.4933 39 1 7.8011 -7.4651 0.8777 40 1 9.2776 -8.4249 1.2074 41 1 9.1049 -8.0768 3.5873 42 1 7.3826 -8.2484 3.1192 43 1 8.1521 -6.0402 4.4588 44 1 7.0454 -5.8622 3.0626 45 1 9.9848 -5.2213 3.2690 46 1 8.7253 -4.4476 2.2655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312660036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -132.631068 kcal Electronic energy + Delta-G solvation = -26757.997114 eV Core-core repulsion = 22874.932868 eV Total energy + Delta-G solvation = -3883.064246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50318 -38.89714 -38.08317 -37.12343 -34.93580 -34.45105 -33.74442 -31.85901 -31.56404 -29.22426 -28.79054 -27.63511 -24.76136 -24.06378 -21.90621 -21.22174 -20.36928 -19.72815 -19.51238 -18.87791 -18.09025 -17.62474 -16.45778 -16.06729 -15.66092 -15.47010 -15.43591 -15.09085 -14.90563 -14.43769 -14.16567 -14.00170 -13.75533 -13.41910 -13.27808 -13.14042 -12.79563 -12.49303 -12.17815 -12.13035 -12.02331 -11.56861 -11.26807 -11.24972 -11.19883 -10.98272 -10.85430 -10.77929 -10.65696 -10.65432 -10.19003 -10.08309 -10.04705 -9.71069 -9.20364 -8.78135 -8.71800 -8.31670 -6.42067 -3.94711 2.73922 2.98543 3.03219 3.11566 3.29674 3.56342 3.85005 4.02302 4.26771 4.39654 4.45336 4.56873 4.60538 4.81656 4.89817 5.04398 5.12972 5.19417 5.26168 5.31570 5.34542 5.43726 5.47423 5.56922 5.61247 5.64652 5.70452 5.74436 5.78189 5.79199 5.83601 5.90529 5.98171 6.03619 6.19152 6.23106 6.52826 6.62658 7.03386 7.38483 7.43722 7.98985 8.15444 8.43087 8.71432 8.80501 9.28574 9.62269 10.70107 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.002988 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.556172 B = 9367.805743 C =10242.747171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.707 3.293 15 O -0.599 6.599 16 N -0.739 5.739 17 C 0.166 3.834 18 H 0.105 0.895 19 C -0.127 4.127 20 C 0.077 3.923 21 O -0.579 6.579 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.119 4.119 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.407 0.593 32 H 0.396 0.604 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.379 0.621 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.816 -11.655 1.031 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.463 6.463 12 C -0.002 4.002 13 N -0.382 5.382 14 C 0.407 3.593 15 O -0.479 6.479 16 N -0.395 5.395 17 C 0.060 3.940 18 H 0.123 0.877 19 C -0.166 4.166 20 C -0.001 4.001 21 O -0.384 6.384 22 C -0.121 4.121 23 C -0.156 4.156 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.157 4.157 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.245 0.755 32 H 0.231 0.769 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.226 0.774 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.993 -11.770 1.531 24.116 hybrid contribution -0.250 1.207 -0.443 1.309 sum 20.743 -10.563 1.088 23.303 Atomic orbital electron populations 1.69622 1.05719 1.27818 1.48196 1.25066 0.95528 0.98169 0.97132 0.86671 0.79925 0.83765 0.79137 1.19398 1.19983 1.19203 1.19436 0.78974 0.96784 1.48671 0.86106 1.42116 1.07680 1.06138 1.65466 1.19668 0.88120 0.84861 0.84951 1.90536 1.69257 1.30918 1.55638 1.20789 0.93314 0.82955 1.03139 1.44775 1.05307 1.09246 1.78909 1.15852 0.82496 0.83370 0.77617 1.90894 1.55059 1.43132 1.58797 1.45134 1.08172 1.06206 1.79983 1.20841 0.80834 0.99562 0.92753 0.87715 1.21877 1.02753 0.99222 0.92709 1.22146 0.98696 0.92899 0.86344 1.86420 1.89233 1.45036 1.17761 1.22184 1.00166 0.95313 0.94407 1.22411 0.99477 0.96902 0.96818 1.22477 1.00972 0.96772 0.95945 1.22330 0.99270 0.94867 0.99610 1.22149 0.98418 0.99168 0.95923 0.91382 0.79247 0.89942 0.89991 0.75510 0.76889 0.90152 0.90773 0.93401 0.93545 0.77377 0.90063 0.91604 0.91646 0.91756 0.91693 0.92062 0.91561 0.92148 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.86 13.96 55.50 0.77 -24.09 16 2 C 0.05 1.21 5.50 -17.46 -0.10 1.11 16 3 Si 0.88 18.88 27.74 -169.99 -4.71 14.16 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 7 C -0.31 -8.49 10.16 -14.94 -0.15 -8.64 16 8 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 9 N -0.58 -13.25 5.09 -10.96 -0.06 -13.31 16 10 C 0.44 9.47 7.85 -10.98 -0.09 9.39 16 11 O -0.58 -14.39 15.24 5.55 0.08 -14.31 16 12 C 0.13 2.15 6.15 -5.19 -0.03 2.12 16 13 N -0.72 -11.12 5.53 -66.41 -0.37 -11.48 16 14 C 0.71 10.15 7.74 -86.93 -0.67 9.48 16 15 O -0.60 -10.39 15.66 5.28 0.08 -10.31 16 16 N -0.74 -7.78 3.68 -58.67 -0.22 -7.99 16 17 C 0.17 1.55 1.88 -67.93 -0.13 1.42 16 18 H 0.10 1.20 6.91 -51.93 -0.36 0.84 16 19 C -0.13 -1.09 4.99 -26.73 -0.13 -1.22 16 20 C 0.08 0.75 6.93 37.15 0.26 1.01 16 21 O -0.58 -5.67 13.66 -35.23 -0.48 -6.15 16 22 C -0.10 -0.82 2.80 -89.50 -0.25 -1.07 16 23 C -0.12 -0.88 5.34 -25.07 -0.13 -1.01 16 24 C -0.12 -0.97 6.91 -24.74 -0.17 -1.14 16 25 C -0.12 -1.15 6.83 -25.08 -0.17 -1.32 16 26 C -0.12 -1.15 6.21 -25.61 -0.16 -1.31 16 27 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.41 6.20 7.46 -40.82 -0.30 5.89 16 32 H 0.40 3.60 7.18 -40.82 -0.29 3.31 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.62 7.53 -51.93 -0.39 0.23 16 35 H 0.05 0.51 7.75 -51.93 -0.40 0.11 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.38 2.22 9.12 45.56 0.42 2.63 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.49 6.04 -51.93 -0.31 0.18 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.87 6.68 -51.93 -0.35 0.53 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -32.85 370.29 -7.68 -40.53 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -6.44 Total: 18.56 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -1.93 Total: 8.81 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.14 Total: -56.87 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.31 Total: -30.77 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.85 -7.68 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312660036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.103 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds