Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86801 * 119.99662 * 2 1 4 4 H 1.48504 * 109.46763 * 269.99972 * 3 2 1 5 5 H 1.48495 * 109.47339 * 29.99730 * 3 2 1 6 6 H 1.48499 * 109.46996 * 150.00329 * 3 2 1 7 7 C 1.38948 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99623 * 0.02562 * 7 2 1 9 9 N 1.37093 * 120.00162 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00142 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99649 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99800 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46765 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99993 * 179.97438 * 13 12 10 15 15 O 1.21595 * 119.99762 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00126 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00245 * 185.03291 * 16 14 13 18 18 H 1.09002 * 109.46685 * 355.27306 * 17 16 14 19 19 C 1.53003 * 109.47126 * 235.28050 * 17 16 14 20 20 C 1.52995 * 109.47487 * 64.99399 * 19 17 16 21 21 O 1.42895 * 109.47183 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.47117 * 115.27548 * 17 16 14 23 23 C 1.54264 * 110.03043 * 55.73998 * 22 17 16 24 24 C 1.54896 * 104.19123 * 217.10172 * 23 22 17 25 25 C 1.54881 * 102.74683 * 37.94363 * 24 23 22 26 26 C 1.53876 * 110.03282 * 298.56859 * 22 17 16 27 27 H 0.97002 * 119.99929 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99751 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47285 * 60.00485 * 12 10 9 30 30 H 1.09004 * 109.47157 * 299.99944 * 12 10 9 31 31 H 0.96996 * 119.99638 * 359.97438 * 13 12 10 32 32 H 0.96998 * 120.00247 * 5.03427 * 16 14 13 33 33 H 1.08995 * 109.47287 * 185.00113 * 19 17 16 34 34 H 1.09000 * 109.47047 * 304.99509 * 19 17 16 35 35 H 1.08995 * 109.47440 * 300.00621 * 20 19 17 36 36 H 1.09000 * 109.46887 * 60.00012 * 20 19 17 37 37 H 0.96703 * 114.00214 * 180.02562 * 21 20 19 38 38 H 1.09003 * 110.01121 * 177.17830 * 22 17 16 39 39 H 1.08995 * 110.48766 * 335.77742 * 23 22 17 40 40 H 1.09003 * 110.48920 * 98.42817 * 23 22 17 41 41 H 1.09000 * 110.75542 * 279.62530 * 24 23 22 42 42 H 1.08996 * 110.90858 * 156.33128 * 24 23 22 43 43 H 1.09007 * 110.48497 * 203.37600 * 25 24 23 44 44 H 1.08998 * 110.60294 * 80.79150 * 25 24 23 45 45 H 1.08997 * 110.03203 * 238.57124 * 26 22 17 46 46 H 1.08998 * 110.03067 * 0.02562 * 26 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4403 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0539 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 7 6.0492 -3.7517 0.0017 14 6 7.3743 -3.9979 0.0013 15 8 8.1644 -3.0737 -0.0001 16 7 7.8235 -5.2685 0.0023 17 6 9.2593 -5.5377 0.1132 18 1 9.8076 -4.5958 0.1001 19 6 9.7080 -6.4053 -1.0645 20 6 9.5426 -5.6212 -2.3678 21 8 9.9610 -6.4317 -3.4677 22 6 9.5405 -6.2734 1.4249 23 6 8.6885 -7.5570 1.5039 24 6 8.2901 -7.6571 2.9974 25 6 8.0379 -6.1785 3.3836 26 6 9.1268 -5.3969 2.6200 27 1 -0.4850 0.8401 0.0004 28 1 3.8649 -0.3632 -0.0004 29 1 5.9242 -1.8558 0.8906 30 1 5.9241 -1.8573 -0.8894 31 1 5.4188 -4.4889 0.0024 32 1 7.1963 -6.0048 -0.0703 33 1 10.7550 -6.6794 -0.9358 34 1 9.0983 -7.3080 -1.1038 35 1 8.4955 -5.3470 -2.4966 36 1 10.1522 -4.7185 -2.3285 37 1 9.8838 -5.9973 -4.3282 38 1 10.5995 -6.5225 1.4933 39 1 7.8011 -7.4651 0.8777 40 1 9.2776 -8.4249 1.2074 41 1 9.1049 -8.0768 3.5873 42 1 7.3826 -8.2484 3.1192 43 1 8.1521 -6.0402 4.4588 44 1 7.0454 -5.8622 3.0626 45 1 9.9848 -5.2213 3.2690 46 1 8.7253 -4.4476 2.2655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312660036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -159.476880 kcal Electronic energy + Delta-G solvation = -26759.161236 eV Core-core repulsion = 22874.932868 eV Total energy + Delta-G solvation = -3884.228368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54698 -40.40766 -39.26520 -37.85301 -36.29652 -35.73358 -35.25034 -33.83652 -32.53460 -29.96058 -29.48552 -29.11646 -26.30087 -25.16648 -22.63579 -22.28378 -21.46224 -21.17434 -20.62699 -20.26836 -19.51484 -18.39396 -17.54614 -17.33500 -16.91741 -16.83065 -16.50320 -16.24712 -16.09613 -15.64131 -15.57348 -14.99447 -14.89946 -14.67835 -14.33286 -14.14353 -14.02683 -13.97831 -13.70869 -13.45606 -12.96508 -12.73127 -12.44857 -12.29140 -12.00599 -11.96376 -11.87734 -11.71988 -11.58021 -11.57373 -11.45879 -11.44155 -11.22535 -10.90635 -10.64815 -10.35874 -10.29951 -9.79208 -8.45736 -6.07662 1.31059 1.33861 1.43605 1.62937 1.79249 2.16577 2.20336 2.80189 3.10727 3.16831 3.32316 3.71168 3.76452 3.89741 3.99964 4.08896 4.17656 4.32132 4.40583 4.44820 4.45612 4.53555 4.61398 4.68604 4.72592 4.80608 4.88201 4.90935 5.02367 5.05968 5.10128 5.18632 5.28994 5.31619 5.35549 5.46475 5.48939 5.53034 5.66784 5.88283 5.99058 6.48930 6.78267 6.81935 7.04155 7.28839 7.57370 7.78526 8.70758 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.002988 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.556172 B = 9367.805743 C =10242.747171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.140 3.860 13 N -0.729 5.729 14 C 0.709 3.291 15 O -0.627 6.627 16 N -0.723 5.723 17 C 0.170 3.830 18 H 0.086 0.914 19 C -0.119 4.119 20 C 0.078 3.922 21 O -0.591 6.591 22 C -0.095 4.095 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.118 4.118 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.408 0.592 32 H 0.405 0.595 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.041 0.959 37 H 0.395 0.605 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.793 -11.565 1.058 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.500 6.500 12 C 0.011 3.989 13 N -0.386 5.386 14 C 0.409 3.591 15 O -0.509 6.509 16 N -0.379 5.379 17 C 0.065 3.935 18 H 0.104 0.896 19 C -0.158 4.158 20 C 0.000 4.000 21 O -0.399 6.399 22 C -0.114 4.114 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.163 4.163 26 C -0.156 4.156 27 H 0.091 0.909 28 H 0.228 0.772 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.245 0.755 32 H 0.242 0.758 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.244 0.756 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 24.002 -11.725 1.547 26.758 hybrid contribution -1.186 1.033 -0.461 1.639 sum 22.816 -10.692 1.086 25.221 Atomic orbital electron populations 1.69784 1.08040 1.29446 1.49363 1.26060 0.96414 1.02574 0.95723 0.85449 0.79573 0.77052 0.80078 1.18064 1.19859 1.15606 1.19026 0.80993 0.95247 1.50737 0.91877 1.41918 1.06100 1.07436 1.66355 1.20532 0.90102 0.83839 0.82216 1.90525 1.70810 1.32312 1.56333 1.20658 0.89108 0.84340 1.04769 1.44744 1.05811 1.08597 1.79473 1.15874 0.81702 0.84157 0.77317 1.90876 1.55504 1.44318 1.60162 1.45068 1.09085 1.05142 1.78626 1.20889 0.79492 0.99102 0.94060 0.89609 1.21820 1.03612 0.98875 0.91475 1.22111 0.97809 0.93021 0.87066 1.86380 1.89172 1.45583 1.18733 1.22163 1.01412 0.95102 0.92731 1.22418 0.99467 0.96984 0.96484 1.22467 1.01484 0.95458 0.96373 1.22321 0.98140 0.96147 0.99672 1.22122 0.98615 0.98114 0.96739 0.90931 0.77249 0.88325 0.88103 0.75480 0.75818 0.88864 0.90054 0.94647 0.94018 0.75583 0.88204 0.91830 0.89951 0.90648 0.91573 0.91920 0.93444 0.91405 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 13.96 21.66 0.30 -54.05 16 2 C -0.01 -0.42 5.50 84.92 0.47 0.05 16 3 Si 0.96 37.97 27.74 68.60 1.90 39.87 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 7 C -0.33 -18.72 10.16 84.04 0.85 -17.87 16 8 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 9 N -0.58 -26.41 5.09 -306.98 -1.56 -27.97 16 10 C 0.45 19.24 7.85 87.66 0.69 19.92 16 11 O -0.61 -31.31 15.24 -3.07 -0.05 -31.35 16 12 C 0.14 4.54 6.15 85.63 0.53 5.07 16 13 N -0.73 -21.77 5.53 -482.28 -2.67 -24.43 16 14 C 0.71 19.76 7.74 179.06 1.39 21.15 16 15 O -0.63 -21.13 15.66 -4.01 -0.06 -21.19 16 16 N -0.72 -14.47 3.68 -457.81 -1.69 -16.15 16 17 C 0.17 2.90 1.88 44.99 0.08 2.99 16 18 H 0.09 1.87 6.91 -2.39 -0.02 1.86 16 19 C -0.12 -1.77 4.99 30.59 0.15 -1.62 16 20 C 0.08 1.41 6.93 71.98 0.50 1.90 16 21 O -0.59 -10.51 13.66 -148.98 -2.03 -12.55 16 22 C -0.09 -1.33 2.80 -10.07 -0.03 -1.36 16 23 C -0.12 -1.42 5.34 31.67 0.17 -1.25 16 24 C -0.12 -1.64 6.91 31.88 0.22 -1.42 16 25 C -0.13 -2.22 6.83 31.67 0.22 -2.00 16 26 C -0.12 -2.15 6.21 31.32 0.19 -1.95 16 27 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.39 15.03 5.76 -92.71 -0.53 14.50 16 29 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 31 H 0.41 12.30 7.46 -92.71 -0.69 11.61 16 32 H 0.41 6.86 7.18 -92.71 -0.67 6.19 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.13 7.53 -2.39 -0.02 1.11 16 35 H 0.04 0.72 7.75 -2.39 -0.02 0.70 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.39 4.01 9.12 -74.06 -0.68 3.33 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 0.81 6.04 -2.39 -0.01 0.79 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.04 1.02 6.68 -2.39 -0.02 1.00 16 Total: -1.00 -74.30 370.29 -2.02 -76.32 By element: Atomic # 1 Polarization: 49.51 SS G_CDS: -1.59 Total: 47.91 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 5.43 Total: 23.60 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -5.61 Total: -122.61 kcal Atomic # 8 Polarization: -62.95 SS G_CDS: -2.14 Total: -65.09 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.87 kcal Total: -74.30 -2.02 -76.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312660036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.160 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds