Wall clock time and date at job start Fri Apr 10 2020 18:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00280 * 2 1 4 4 H 1.48493 * 109.47395 * 270.00035 * 3 2 1 5 5 H 1.48498 * 109.47038 * 30.00329 * 3 2 1 6 6 H 1.48504 * 109.47009 * 150.00128 * 3 2 1 7 7 C 1.37876 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99968 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00071 * 180.27293 * 7 2 1 10 10 C 1.52998 * 109.47185 * 179.72459 * 9 7 2 11 11 C 1.53009 * 109.46963 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46792 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99827 * 179.97438 * 12 11 10 14 14 O 1.21351 * 120.00188 * 0.02562 * 13 12 11 15 15 C 1.49445 * 120.00345 * 180.02562 * 13 12 11 16 16 O 1.21351 * 120.00014 * 353.55522 * 15 13 12 17 17 N 1.34772 * 120.00378 * 173.55711 * 15 13 12 18 18 C 1.47157 * 120.97991 * 1.63637 * 17 15 13 19 19 C 1.53294 * 108.38078 * 230.50970 * 18 17 15 20 20 O 1.42960 * 109.22705 * 307.69567 * 19 18 17 21 21 C 1.42960 * 114.16358 * 62.58138 * 20 19 18 22 22 H 1.09007 * 109.51138 * 57.34619 * 21 20 19 23 23 C 1.50703 * 109.51549 * 177.44255 * 21 20 19 24 24 N 1.34768 * 120.00515 * 185.00181 * 23 21 20 25 25 O 1.21282 * 119.99384 * 5.00369 * 23 21 20 26 26 C 1.47152 * 120.98579 * 181.35069 * 17 15 13 27 27 H 0.97002 * 119.99615 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47522 * 299.73000 * 9 7 2 29 29 H 1.09006 * 109.46844 * 59.72899 * 9 7 2 30 30 H 1.08999 * 109.47335 * 299.99692 * 10 9 7 31 31 H 1.08997 * 109.47431 * 60.00520 * 10 9 7 32 32 H 1.08999 * 109.46654 * 299.99877 * 11 10 9 33 33 H 1.08998 * 109.47288 * 60.00144 * 11 10 9 34 34 H 0.96996 * 120.00168 * 0.02562 * 12 11 10 35 35 H 1.08992 * 109.68189 * 350.23580 * 18 17 15 36 36 H 1.08997 * 109.68119 * 110.75320 * 18 17 15 37 37 H 1.09000 * 109.51488 * 67.62403 * 19 18 17 38 38 H 1.09007 * 109.51238 * 187.72366 * 19 18 17 39 39 H 0.97005 * 119.99827 * 359.97438 * 24 23 21 40 40 H 0.96998 * 120.00431 * 180.02562 * 24 23 21 41 41 H 1.09000 * 109.68734 * 249.21262 * 26 17 15 42 42 H 1.09004 * 109.67946 * 9.76671 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0057 10 6 4.0213 -2.6367 0.0106 11 6 5.5514 -2.6368 0.0176 12 7 6.0396 -4.0180 0.0230 13 6 7.3646 -4.2644 0.0290 14 8 8.1533 -3.3421 0.0305 15 6 7.8628 -5.6734 0.0339 16 8 7.0799 -6.5933 0.1504 17 7 9.1814 -5.9224 -0.0910 18 6 10.1532 -4.8226 -0.1977 19 6 11.0531 -5.0886 -1.4098 20 8 11.5954 -6.4078 -1.3131 21 6 10.6143 -7.4472 -1.3399 22 1 10.0263 -7.3694 -2.2545 23 6 11.3003 -8.7883 -1.2954 24 7 10.5771 -9.9195 -1.4124 25 8 12.5033 -8.8496 -1.1541 26 6 9.6924 -7.3021 -0.1185 27 1 -0.4850 0.8401 0.0004 28 1 3.8786 -0.6821 -0.8837 29 1 3.8711 -0.6787 0.8962 30 1 3.6544 -3.1488 0.9001 31 1 3.6618 -3.1523 -0.8798 32 1 5.9187 -2.1246 -0.8717 33 1 5.9107 -2.1214 0.9083 34 1 5.4092 -4.7552 0.0214 35 1 9.6257 -3.8784 -0.3322 36 1 10.7590 -4.7790 0.7074 37 1 10.4667 -5.0021 -2.3246 38 1 11.8646 -4.3610 -1.4275 39 1 9.6149 -9.8705 -1.5250 40 1 11.0187 -10.7827 -1.3834 41 1 10.2531 -7.5042 0.7941 42 1 8.8596 -8.0005 -0.2006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322765537.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:08 Heat of formation + Delta-G solvation = -164.050675 kcal Electronic energy + Delta-G solvation = -25729.386327 eV Core-core repulsion = 21709.126530 eV Total energy + Delta-G solvation = -4020.259797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26649 -41.04791 -39.81063 -39.10935 -37.33412 -36.04376 -35.13653 -34.88146 -33.30719 -32.57568 -29.75047 -29.07336 -26.92840 -25.45609 -24.25510 -22.97401 -22.31000 -21.64888 -21.01122 -19.24778 -18.87859 -18.72635 -18.15626 -17.96258 -17.39376 -17.06641 -16.91698 -16.76792 -16.34586 -16.29711 -15.91177 -15.62325 -15.29383 -15.15655 -15.03532 -14.76581 -14.35974 -14.07738 -13.83141 -13.73153 -13.58614 -12.80554 -12.73328 -12.70040 -12.36398 -12.03325 -11.84370 -11.74839 -11.58807 -11.51503 -11.31233 -11.13408 -10.77965 -10.74025 -10.37720 -10.21778 -9.90466 -8.27076 -6.31428 0.19192 0.99935 1.39867 1.41733 1.43551 1.53055 1.92378 1.99648 2.25836 2.38725 3.00203 3.08902 3.16429 3.41516 3.69598 3.81794 3.91052 4.02921 4.15043 4.16834 4.20340 4.35747 4.48702 4.51824 4.66929 4.79131 4.89020 4.94822 4.96542 5.04563 5.34715 5.49616 5.57812 5.66869 5.71484 5.77142 5.92858 6.08211 6.29436 6.32125 6.53379 6.77381 6.82949 7.19510 7.33363 8.89389 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.034681 B = 0.002181 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.163624 B =12834.921625 C =13412.040912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.532 4.532 8 H 0.034 0.966 9 C -0.011 4.011 10 C -0.105 4.105 11 C 0.124 3.876 12 N -0.682 5.682 13 C 0.508 3.492 14 O -0.526 6.526 15 C 0.516 3.484 16 O -0.533 6.533 17 N -0.581 5.581 18 C 0.019 3.981 19 C 0.049 3.951 20 O -0.377 6.377 21 C 0.062 3.938 22 H 0.112 0.888 23 C 0.529 3.471 24 N -0.825 5.825 25 O -0.570 6.570 26 C 0.087 3.913 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.419 0.581 35 H 0.161 0.839 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.420 0.580 40 H 0.416 0.584 41 H 0.087 0.913 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.178 -16.548 -3.281 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.049 4.049 10 C -0.143 4.143 11 C 0.001 3.999 12 N -0.333 5.333 13 C 0.289 3.711 14 O -0.405 6.405 15 C 0.299 3.701 16 O -0.410 6.410 17 N -0.315 5.315 18 C -0.101 4.101 19 C -0.027 4.027 20 O -0.296 6.296 21 C 0.000 4.000 22 H 0.129 0.871 23 C 0.312 3.688 24 N -0.392 5.392 25 O -0.448 6.448 26 C -0.035 4.035 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.257 0.743 35 H 0.177 0.823 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.251 0.749 40 H 0.249 0.751 41 H 0.106 0.894 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 24.104 -16.162 -3.103 29.187 hybrid contribution -1.088 0.100 0.051 1.093 sum 23.017 -16.062 -3.051 28.233 Atomic orbital electron populations 1.70076 1.08380 1.28109 1.52755 1.26052 0.95625 1.03678 0.94262 0.85652 0.79623 0.78139 0.79204 1.19180 1.21471 1.16523 1.21491 0.92164 0.93115 1.50196 0.94746 1.19463 0.93818 0.94417 0.97222 1.21524 0.92166 0.98377 1.02267 1.21595 0.94438 0.80820 1.03056 1.45916 1.06210 1.10860 1.70362 1.20087 0.83605 0.89300 0.78073 1.90351 1.53295 1.46349 1.50521 1.19990 0.82901 0.89272 0.77941 1.90766 1.55184 1.45913 1.49097 1.47981 1.05349 1.08490 1.69664 1.23975 0.92335 0.93625 1.00210 1.23283 0.99052 0.83402 0.97002 1.88076 1.31977 1.14862 1.94639 1.22415 0.90065 0.87463 1.00092 0.87096 1.20081 0.86809 0.86408 0.75527 1.43582 1.12860 1.07736 1.75015 1.90779 1.16403 1.87836 1.49829 1.22439 0.98832 0.83745 0.98501 0.92602 0.95631 0.95688 0.91961 0.91706 0.90305 0.90743 0.74343 0.82315 0.89981 0.91427 0.85050 0.74864 0.75084 0.89439 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 2 C 0.00 0.02 5.47 84.65 0.46 0.49 16 3 Si 0.95 42.67 27.47 68.60 1.88 44.56 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 7 C -0.53 -29.23 9.66 25.60 0.25 -28.98 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.11 -3.48 5.27 30.60 0.16 -3.31 16 11 C 0.12 3.26 5.67 86.38 0.49 3.75 16 12 N -0.68 -15.71 5.55 -464.40 -2.58 -18.28 16 13 C 0.51 11.60 7.81 87.27 0.68 12.28 16 14 O -0.53 -13.09 13.04 -3.25 -0.04 -13.13 16 15 C 0.52 10.74 7.77 87.27 0.68 11.41 16 16 O -0.53 -12.52 15.97 -3.25 -0.05 -12.57 16 17 N -0.58 -9.93 3.01 -818.13 -2.47 -12.40 16 18 C 0.02 0.30 6.39 86.35 0.55 0.85 16 19 C 0.05 0.68 6.98 72.08 0.50 1.18 16 20 O -0.38 -7.14 9.92 -130.02 -1.29 -8.43 16 21 C 0.06 0.87 3.20 30.09 0.10 0.96 16 22 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 23 C 0.53 8.29 7.45 87.66 0.65 8.95 16 24 N -0.83 -5.07 8.84 -173.54 -1.53 -6.60 16 25 O -0.57 -15.00 17.35 15.93 0.28 -14.72 16 26 C 0.09 1.18 5.91 86.49 0.51 1.70 16 27 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.03 1.04 7.57 -2.39 -0.02 1.02 16 29 H 0.02 1.04 7.19 -2.38 -0.02 1.02 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.42 8.87 7.96 -92.71 -0.74 8.13 16 35 H 0.16 2.90 3.96 -72.79 -0.29 2.61 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.42 0.15 8.83 -92.70 -0.82 -0.67 16 40 H 0.42 1.76 8.93 -92.71 -0.83 0.94 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.12 1.32 7.09 -2.39 -0.02 1.30 16 Total: -1.00 -76.57 352.60 -1.97 -78.54 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -1.63 Total: 12.50 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.16 Total: 8.91 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -6.28 Total: -95.65 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -1.11 Total: -48.86 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.56 kcal Total: -76.57 -1.97 -78.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322765537.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.512 kcal (2) G-P(sol) polarization free energy of solvation -76.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds