Wall clock time and date at job start Fri Apr 10 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00103 * 2 1 4 4 H 1.48503 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47075 * 299.99969 * 3 2 1 6 6 H 1.48495 * 109.47338 * 59.99966 * 3 2 1 7 7 C 1.37878 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00286 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47043 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47043 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99604 * 180.02562 * 12 11 10 14 14 O 1.21350 * 120.00160 * 359.97438 * 13 12 11 15 15 C 1.49456 * 119.99824 * 180.02562 * 13 12 11 16 16 O 1.21354 * 119.99643 * 6.43516 * 15 13 12 17 17 N 1.34769 * 119.99955 * 186.44334 * 15 13 12 18 18 C 1.47160 * 120.98399 * 358.34529 * 17 15 13 19 19 C 1.53294 * 108.38505 * 129.44464 * 18 17 15 20 20 O 1.42967 * 109.21980 * 52.30543 * 19 18 17 21 21 C 1.42962 * 114.16605 * 297.41396 * 20 19 18 22 22 H 1.08997 * 109.51692 * 302.66274 * 21 20 19 23 23 C 1.50698 * 109.51175 * 182.55642 * 21 20 19 24 24 N 1.34777 * 120.00057 * 175.10486 * 23 21 20 25 25 O 1.21281 * 119.99979 * 355.10554 * 23 21 20 26 26 C 1.47149 * 120.98449 * 178.32821 * 17 15 13 27 27 H 0.96997 * 119.99851 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46783 * 59.99550 * 9 7 2 29 29 H 1.09000 * 109.46458 * 299.99731 * 9 7 2 30 30 H 1.09005 * 109.47431 * 60.00234 * 10 9 7 31 31 H 1.09000 * 109.47398 * 300.00178 * 10 9 7 32 32 H 1.09005 * 109.46681 * 59.99940 * 11 10 9 33 33 H 1.09000 * 109.46625 * 300.00080 * 11 10 9 34 34 H 0.96996 * 120.00289 * 359.97438 * 12 11 10 35 35 H 1.08996 * 109.67669 * 9.72269 * 18 17 15 36 36 H 1.08996 * 109.70936 * 249.19259 * 18 17 15 37 37 H 1.08995 * 109.51333 * 292.38268 * 19 18 17 38 38 H 1.08996 * 109.55327 * 172.24764 * 19 18 17 39 39 H 0.97003 * 119.99818 * 0.02562 * 24 23 21 40 40 H 0.97002 * 120.00027 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.68411 * 110.82786 * 26 17 15 42 42 H 1.09004 * 109.68114 * 350.27941 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4993 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0019 14 8 0.7898 -7.5931 0.0020 15 6 2.9540 -8.5074 0.0031 16 8 4.1420 -8.2898 0.1218 17 7 2.5105 -9.7732 -0.1277 18 6 1.0721 -10.0645 -0.2370 19 6 0.8534 -10.9706 -1.4540 20 8 1.7247 -12.1003 -1.3623 21 6 3.1155 -11.7702 -1.3865 22 1 3.3428 -11.2174 -2.2979 23 6 3.9338 -13.0351 -1.3477 24 7 5.2753 -12.9736 -1.4613 25 8 3.3851 -14.1084 -1.2142 26 6 3.4501 -10.9050 -0.1660 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6044 0.8906 31 1 2.8719 -3.6044 -0.8894 32 1 0.8532 -5.0451 -0.8886 33 1 0.8539 -5.0446 0.8914 34 1 3.3858 -5.9235 0.0014 35 1 0.5183 -9.1348 -0.3672 36 1 0.7303 -10.5721 0.6650 37 1 1.0724 -10.4149 -2.3657 38 1 -0.1821 -11.3102 -1.4744 39 1 5.7142 -12.1150 -1.5677 40 1 5.8020 -13.7878 -1.4367 41 1 3.3483 -11.4976 0.7431 42 1 4.4709 -10.5320 -0.2492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322765538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:12 Heat of formation + Delta-G solvation = -166.575944 kcal Electronic energy + Delta-G solvation = -25673.156314 eV Core-core repulsion = 21652.787013 eV Total energy + Delta-G solvation = -4020.369301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.27376 -41.05457 -39.81074 -39.11091 -37.31421 -36.04125 -35.17742 -34.88640 -33.05682 -32.59470 -29.65822 -28.81732 -26.91004 -25.56220 -24.39137 -23.05395 -22.39165 -21.65494 -21.02205 -19.18764 -18.76872 -18.51542 -18.14654 -17.95152 -17.38681 -17.04335 -16.92279 -16.77177 -16.45245 -16.28393 -15.99967 -15.63447 -15.29065 -15.16276 -15.04353 -14.37925 -14.27643 -14.08115 -13.81073 -13.68337 -13.49198 -12.80375 -12.77509 -12.55449 -12.39347 -12.33711 -11.99737 -11.68744 -11.56816 -11.47188 -11.18601 -11.13132 -10.77680 -10.54405 -10.38302 -10.22100 -9.90902 -8.18850 -6.29173 0.18852 0.99377 1.42163 1.42976 1.43897 1.55592 1.92232 1.99290 2.24824 2.43196 3.00091 3.15443 3.16364 3.42971 3.69482 3.81911 3.90620 4.09164 4.14593 4.16718 4.21067 4.35941 4.49869 4.55235 4.66862 4.79470 4.94091 4.95963 5.02947 5.17491 5.36970 5.53850 5.71129 5.73059 5.76828 5.86302 5.92791 6.07307 6.24840 6.32396 6.53608 6.83557 6.88447 7.19838 7.40240 8.93056 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.035810 B = 0.002076 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.712538 B =13485.900792 C =14027.886786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.127 3.873 12 N -0.680 5.680 13 C 0.506 3.494 14 O -0.528 6.528 15 C 0.518 3.482 16 O -0.531 6.531 17 N -0.580 5.580 18 C 0.019 3.981 19 C 0.050 3.950 20 O -0.377 6.377 21 C 0.061 3.939 22 H 0.111 0.889 23 C 0.530 3.470 24 N -0.825 5.825 25 O -0.570 6.570 26 C 0.087 3.913 27 H 0.263 0.737 28 H -0.002 1.002 29 H -0.004 1.004 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.420 0.580 35 H 0.159 0.841 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.420 0.580 40 H 0.416 0.584 41 H 0.087 0.913 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.916 -24.233 -3.406 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.082 0.918 9 C -0.014 4.014 10 C -0.145 4.145 11 C 0.004 3.996 12 N -0.331 5.331 13 C 0.287 3.713 14 O -0.407 6.407 15 C 0.301 3.699 16 O -0.408 6.408 17 N -0.314 5.314 18 C -0.102 4.102 19 C -0.027 4.027 20 O -0.295 6.295 21 C -0.001 4.001 22 H 0.129 0.871 23 C 0.312 3.688 24 N -0.392 5.392 25 O -0.448 6.448 26 C -0.035 4.035 27 H 0.072 0.928 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.258 0.742 35 H 0.175 0.825 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.252 0.748 40 H 0.249 0.751 41 H 0.106 0.894 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.001 -24.912 -3.233 26.685 hybrid contribution 0.801 1.328 0.069 1.553 sum 9.802 -23.583 -3.164 25.735 Atomic orbital electron populations 1.70098 1.07748 1.27668 1.51789 1.25969 0.95751 1.03361 0.94937 0.85417 0.79195 0.78956 0.77580 1.18418 1.20612 1.20705 1.21716 0.93708 0.92149 1.50207 0.91782 1.18942 0.94380 0.92558 0.95489 1.21642 0.98625 0.91944 1.02248 1.21520 0.91506 0.84250 1.02338 1.45901 1.12419 1.04469 1.70345 1.20169 0.88399 0.84643 0.78070 1.90359 1.17245 1.82634 1.50509 1.19926 0.88034 0.83986 0.77960 1.90758 1.16653 1.84276 1.49105 1.47963 1.09323 1.04539 1.69597 1.23963 0.79918 1.06106 1.00213 1.23273 0.95834 0.86657 0.96925 1.88079 1.14206 1.32544 1.94690 1.22340 0.84124 0.93506 1.00125 0.87112 1.20060 0.83807 0.89386 0.75516 1.43578 1.05633 1.14845 1.75110 1.90779 1.72349 1.31826 1.49871 1.22362 0.95900 0.86716 0.98543 0.92838 0.98394 0.98533 0.91566 0.91339 0.91175 0.91536 0.74221 0.82500 0.89939 0.91443 0.85072 0.74847 0.75065 0.89438 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -29.12 9.11 25.60 0.23 -28.88 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.11 -3.79 5.27 30.59 0.16 -3.62 16 11 C 0.13 3.84 5.67 86.38 0.49 4.33 16 12 N -0.68 -17.01 5.55 -464.39 -2.58 -19.59 16 13 C 0.51 12.54 7.81 87.27 0.68 13.22 16 14 O -0.53 -14.57 13.04 -3.25 -0.04 -14.61 16 15 C 0.52 11.32 7.77 87.27 0.68 12.00 16 16 O -0.53 -12.73 15.97 -3.26 -0.05 -12.79 16 17 N -0.58 -10.49 3.02 -818.92 -2.47 -12.97 16 18 C 0.02 0.32 6.39 86.35 0.55 0.87 16 19 C 0.05 0.74 6.99 72.08 0.50 1.25 16 20 O -0.38 -7.42 9.92 -130.02 -1.29 -8.71 16 21 C 0.06 0.89 3.19 29.95 0.10 0.99 16 22 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 23 C 0.53 8.48 7.45 87.66 0.65 9.14 16 24 N -0.83 -5.21 8.84 -173.53 -1.53 -6.74 16 25 O -0.57 -15.20 17.35 15.93 0.28 -14.93 16 26 C 0.09 1.23 5.88 86.36 0.51 1.74 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.42 9.29 7.96 -92.71 -0.74 8.55 16 35 H 0.16 3.17 3.96 -72.81 -0.29 2.89 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.42 0.20 8.83 -92.71 -0.82 -0.62 16 40 H 0.42 1.82 8.93 -92.71 -0.83 0.99 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.12 1.37 7.09 -2.38 -0.02 1.35 16 Total: -1.00 -74.48 356.17 -1.79 -76.26 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -1.58 Total: 11.47 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.17 Total: 12.67 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -6.30 Total: -94.28 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -1.11 Total: -51.03 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -74.48 -1.79 -76.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322765538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.312 kcal (2) G-P(sol) polarization free energy of solvation -74.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds