Wall clock time and date at job start Fri Apr 10 2020 18:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 C 1.52995 * 109.47315 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47421 * 64.99821 * 4 3 2 6 6 C 1.36983 * 120.00365 * 270.00647 * 5 4 3 7 7 H 1.07997 * 120.00442 * 125.32590 * 6 5 4 8 8 C 1.38982 * 119.99679 * 305.32932 * 6 5 4 9 9 N 1.31415 * 119.99996 * 174.54942 * 8 6 5 10 10 Si 1.86800 * 120.00054 * 354.55678 * 8 6 5 11 11 H 1.48496 * 109.47747 * 94.97833 * 10 8 6 12 12 H 1.48504 * 109.47167 * 214.98186 * 10 8 6 13 13 H 1.48501 * 109.46839 * 334.97688 * 10 8 6 14 14 C 1.34771 * 120.00205 * 90.00327 * 5 4 3 15 15 O 1.21631 * 120.00112 * 3.32400 * 14 5 4 16 16 C 1.47360 * 120.00583 * 183.32707 * 14 5 4 17 17 C 1.41325 * 126.41766 * 352.22316 * 16 14 5 18 18 N 1.30438 * 108.02453 * 180.02562 * 17 16 14 19 19 N 1.39927 * 108.91942 * 359.97438 * 18 17 16 20 20 C 1.46497 * 125.75391 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47344 * 304.97506 * 20 19 18 22 22 H 1.09005 * 109.46783 * 54.99863 * 21 20 19 23 23 O 1.42893 * 109.46863 * 295.00148 * 21 20 19 24 24 C 1.52996 * 109.47233 * 174.99801 * 21 20 19 25 25 O 1.42896 * 109.46940 * 185.00083 * 24 21 20 26 26 C 1.34287 * 108.49513 * 0.02562 * 19 18 17 27 27 H 1.09003 * 109.47113 * 300.00278 * 1 2 3 28 28 H 1.09004 * 109.46824 * 59.99834 * 1 2 3 29 29 H 1.08996 * 109.47079 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47074 * 60.00231 * 3 2 1 31 31 H 1.09009 * 109.47207 * 299.99998 * 3 2 1 32 32 H 1.09004 * 109.46938 * 304.99880 * 4 3 2 33 33 H 1.08999 * 109.47464 * 185.00049 * 4 3 2 34 34 H 0.96999 * 119.99822 * 180.02562 * 9 8 6 35 35 H 1.08007 * 125.98486 * 0.26316 * 17 16 14 36 36 H 1.09003 * 109.47101 * 64.97842 * 20 19 18 37 37 H 1.09002 * 109.47482 * 184.97218 * 20 19 18 38 38 H 0.96695 * 114.00680 * 299.99452 * 23 21 20 39 39 H 1.09004 * 109.47319 * 305.00098 * 24 21 20 40 40 H 1.08998 * 109.47165 * 65.00137 * 24 21 20 41 41 H 0.96700 * 114.00020 * 180.02562 * 25 24 21 42 42 H 1.08005 * 126.29967 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0968 -0.7974 -1.3369 7 1 3.5789 -1.3385 -2.1149 8 6 4.8861 -1.4828 -0.4211 9 7 4.9179 -2.7965 -0.4345 10 14 5.9017 -0.5367 0.8291 11 1 5.1434 -0.4258 2.1010 12 1 7.1783 -1.2544 1.0748 13 1 6.1909 0.8224 0.3051 14 6 4.2616 1.3337 -2.3217 15 8 4.2125 2.5455 -2.2296 16 6 4.6336 0.7068 -3.6024 17 6 4.8817 -0.6669 -3.8233 18 7 5.1815 -0.8255 -5.0828 19 7 5.1398 0.4199 -5.7193 20 6 5.4148 0.6663 -7.1370 21 6 6.7957 0.1116 -7.4926 22 1 6.8462 -0.9417 -7.2167 23 8 7.7988 0.8391 -6.7810 24 6 7.0315 0.2565 -8.9973 25 8 8.2695 -0.3654 -9.3475 26 6 4.8052 1.3513 -4.8117 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.4686 -3.2748 0.2049 35 1 4.8283 -1.4489 -3.0802 36 1 4.6571 0.1722 -7.7453 37 1 5.3932 1.7388 -7.3304 38 1 7.8123 1.7857 -6.9778 39 1 6.2174 -0.2233 -9.5406 40 1 7.0694 1.3140 -9.2590 41 1 8.4843 -0.3116 -10.2888 42 1 4.6915 2.4098 -4.9938 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329324251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:26 Heat of formation + Delta-G solvation = -74.197215 kcal Electronic energy + Delta-G solvation = -26813.947445 eV Core-core repulsion = 22797.583986 eV Total energy + Delta-G solvation = -4016.363459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66348 -38.69963 -38.18766 -36.94321 -36.07706 -34.74878 -33.07857 -31.93993 -30.13291 -29.90081 -28.68095 -26.07017 -25.56229 -24.76892 -22.79711 -22.19693 -20.99880 -20.20268 -18.90714 -17.95508 -17.45908 -16.79259 -16.43717 -16.15266 -15.79963 -15.68738 -15.16914 -15.01000 -14.61356 -14.44772 -14.02632 -13.82480 -13.57660 -13.36066 -13.07425 -12.93856 -12.52992 -12.44613 -12.20790 -11.88233 -11.73050 -11.43358 -11.32588 -11.15994 -10.85971 -10.76014 -10.49051 -10.32314 -10.18800 -9.95614 -9.90216 -9.06114 -9.00861 -8.79251 -8.56717 -7.91030 -7.45387 -6.29552 -4.09802 2.22577 2.78640 3.15753 3.21601 3.34429 3.39951 3.75043 4.14250 4.25556 4.38268 4.46678 4.57525 4.61970 4.72839 4.79448 4.85286 5.02129 5.07375 5.19162 5.34277 5.61424 5.69279 5.73503 5.84942 5.88053 5.97787 6.02837 6.06227 6.16403 6.30219 6.41634 6.53914 6.76890 7.26165 7.42297 7.49896 7.53221 7.61359 7.82503 8.22003 8.32303 8.39183 9.10284 9.43308 9.79072 10.77425 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.003801 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.625231 B = 7364.518671 C = 7959.003721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.055 3.945 4 C 0.105 3.895 5 N -0.460 5.460 6 C -0.328 4.328 7 H 0.107 0.893 8 C 0.072 3.928 9 N -0.869 5.869 10 Si 0.878 3.122 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.260 1.260 14 C 0.568 3.432 15 O -0.609 6.609 16 C -0.251 4.251 17 C 0.101 3.899 18 N -0.322 5.322 19 N -0.373 5.373 20 C 0.109 3.891 21 C 0.095 3.905 22 H 0.122 0.878 23 O -0.540 6.540 24 C 0.048 3.952 25 O -0.560 6.560 26 C 0.095 3.905 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.274 0.726 35 H 0.233 0.767 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.368 0.632 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.379 0.621 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 7.449 -12.723 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.022 4.022 4 C -0.018 4.018 5 N -0.180 5.180 6 C -0.456 4.456 7 H 0.124 0.876 8 C -0.135 4.135 9 N -0.504 5.504 10 Si 0.706 3.294 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.184 1.184 14 C 0.359 3.641 15 O -0.495 6.495 16 C -0.265 4.265 17 C -0.086 4.086 18 N -0.141 5.141 19 N -0.153 5.153 20 C -0.014 4.014 21 C 0.035 3.965 22 H 0.139 0.861 23 O -0.343 6.343 24 C -0.031 4.031 25 O -0.365 6.365 26 C -0.055 4.055 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.248 0.752 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.214 0.786 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.225 0.775 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.002 6.139 -12.729 14.168 hybrid contribution -0.275 1.827 0.496 1.913 sum -1.277 7.967 -12.233 14.654 Atomic orbital electron populations 1.22654 0.83125 1.02041 0.98709 1.88200 1.17589 1.26831 1.95006 1.22899 0.95215 0.85042 0.99092 1.21681 0.91765 0.98925 0.89476 1.43297 1.58961 1.06901 1.08863 1.18966 1.28933 0.79552 1.18107 0.87619 1.25458 0.95595 0.95178 0.97265 1.69643 1.38406 1.06200 1.36156 0.86808 0.79898 0.81149 0.81591 1.20110 1.21474 1.18435 1.17489 0.77508 0.85232 0.83828 1.90592 1.58914 1.14357 1.85674 1.20218 1.17995 0.94229 0.94086 1.25999 0.91996 0.98079 0.92495 1.77195 1.26684 1.00887 1.09352 1.48128 1.53674 1.06103 1.07376 1.22135 0.97984 1.01956 0.79302 1.22277 0.85970 0.99319 0.88965 0.86051 1.86792 1.55666 1.23500 1.68364 1.22824 0.87132 0.96791 0.96357 1.86594 1.39320 1.80344 1.30241 1.22686 0.98388 0.95318 0.89065 0.95206 0.94970 0.90131 0.94019 0.93515 0.91079 0.89870 0.91541 0.75172 0.89014 0.88645 0.78580 0.92398 0.93186 0.77469 0.80961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.50 10.18 -35.23 -0.36 -7.86 16 3 C 0.06 1.08 6.28 37.16 0.23 1.32 16 4 C 0.10 2.32 4.45 -4.05 -0.02 2.30 16 5 N -0.46 -11.23 1.91 -116.05 -0.22 -11.45 16 6 C -0.33 -8.45 6.24 -14.97 -0.09 -8.54 16 7 H 0.11 2.88 6.11 -52.49 -0.32 2.56 16 8 C 0.07 1.91 5.45 -17.45 -0.10 1.82 16 9 N -0.87 -23.91 13.96 55.50 0.77 -23.13 16 10 Si 0.88 21.06 24.93 -169.99 -4.24 16.82 16 11 H -0.27 -6.37 6.99 56.52 0.40 -5.98 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.26 -6.35 6.95 56.52 0.39 -5.96 16 14 C 0.57 13.78 7.63 -12.55 -0.10 13.69 16 15 O -0.61 -15.31 16.47 5.25 0.09 -15.23 16 16 C -0.25 -5.55 6.02 -105.06 -0.63 -6.18 16 17 C 0.10 2.26 10.23 -16.97 -0.17 2.08 16 18 N -0.32 -6.59 12.24 30.87 0.38 -6.21 16 19 N -0.37 -6.21 3.60 -60.78 -0.22 -6.43 16 20 C 0.11 1.17 6.13 -4.04 -0.02 1.15 16 21 C 0.10 1.11 3.36 -26.73 -0.09 1.02 16 22 H 0.12 1.82 8.04 -51.93 -0.42 1.40 16 23 O -0.54 -7.42 13.25 -40.09 -0.53 -7.95 16 24 C 0.05 0.38 6.68 37.16 0.25 0.63 16 25 O -0.56 -5.52 13.62 -40.09 -0.55 -6.07 16 26 C 0.09 1.71 11.26 -16.53 -0.19 1.53 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.07 1.62 4.41 -51.93 -0.23 1.39 16 33 H 0.08 1.78 7.38 -51.93 -0.38 1.39 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.23 5.66 4.80 -52.48 -0.25 5.41 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.69 8.06 -51.93 -0.42 0.27 16 38 H 0.37 3.34 9.05 45.56 0.41 3.75 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.38 1.73 9.12 45.56 0.42 2.15 16 42 H 0.17 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -35.68 354.41 -3.50 -39.17 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.15 Total: 10.56 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 0.19 Total: 12.42 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.71 Total: -47.22 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.35 Total: -37.10 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.24 Total: 16.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.68 -3.50 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329324251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.024 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds