Wall clock time and date at job start Fri Apr 10 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99914 * 2 1 4 4 C 1.34776 * 119.99798 * 179.97438 * 2 1 3 5 5 O 1.21280 * 120.00092 * 0.02562 * 4 2 1 6 6 C 1.50706 * 119.99626 * 179.97438 * 4 2 1 7 7 N 1.46504 * 109.46780 * 180.02562 * 6 4 2 8 8 C 1.34777 * 119.99827 * 180.02562 * 7 6 4 9 9 O 1.21345 * 120.00010 * 359.97438 * 8 7 6 10 10 C 1.49454 * 119.99788 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00202 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99788 * 179.97438 * 10 8 7 13 13 C 1.47027 * 125.64867 * 359.95106 * 12 10 8 14 14 C 1.54367 * 107.28564 * 181.13053 * 13 12 10 15 15 C 1.55156 * 102.92264 * 22.14605 * 14 13 12 16 16 O 1.42894 * 111.00661 * 82.63741 * 15 14 13 17 17 C 1.50705 * 111.00010 * 206.45343 * 15 14 13 18 18 H 1.07993 * 120.00222 * 356.17881 * 17 15 14 19 19 C 1.37881 * 119.99392 * 175.90919 * 17 15 14 20 20 N 1.31509 * 120.00570 * 354.23595 * 19 17 15 21 21 Si 1.86801 * 119.99492 * 174.24147 * 19 17 15 22 22 H 1.48500 * 109.47445 * 94.98741 * 21 19 17 23 23 H 1.48506 * 109.47043 * 214.98367 * 21 19 17 24 24 H 1.48496 * 109.47404 * 334.97778 * 21 19 17 25 25 C 1.47424 * 125.64700 * 179.97438 * 12 10 8 26 26 H 1.08994 * 109.46795 * 270.00176 * 1 2 3 27 27 H 1.09001 * 109.46760 * 30.00116 * 1 2 3 28 28 H 1.09000 * 109.46963 * 149.99879 * 1 2 3 29 29 H 1.09008 * 109.47174 * 269.99950 * 3 2 1 30 30 H 1.08998 * 109.47447 * 29.99674 * 3 2 1 31 31 H 1.09002 * 109.47333 * 150.00088 * 3 2 1 32 32 H 1.08995 * 109.47099 * 60.00523 * 6 4 2 33 33 H 1.09002 * 109.47191 * 299.99997 * 6 4 2 34 34 H 0.96999 * 120.00200 * 359.97438 * 7 6 4 35 35 H 1.08996 * 109.88083 * 300.51793 * 13 12 10 36 36 H 1.09004 * 109.88118 * 61.68271 * 13 12 10 37 37 H 1.08998 * 110.70797 * 263.79195 * 14 13 12 38 38 H 1.09008 * 110.75397 * 140.50586 * 14 13 12 39 39 H 0.96708 * 113.99643 * 183.17930 * 16 15 14 40 40 H 0.96998 * 120.00806 * 180.02562 * 20 19 17 41 41 H 1.09000 * 110.36750 * 36.99474 * 25 12 10 42 42 H 1.08997 * 110.36842 * 274.66920 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 7 4.1342 -2.5484 0.0001 8 6 5.4593 -2.7947 0.0001 9 8 6.2479 -1.8724 -0.0004 10 6 5.9575 -4.2038 0.0008 11 8 5.1689 -5.1261 0.0018 12 7 7.2825 -4.4501 0.0004 13 6 8.3433 -3.4320 -0.0018 14 6 9.6946 -4.1777 -0.0306 15 6 9.3134 -5.5643 -0.6130 16 8 9.2479 -5.5202 -2.0398 17 6 10.2772 -6.6272 -0.1520 18 1 11.1331 -6.3564 0.4483 19 6 10.0630 -7.9462 -0.4919 20 7 8.9610 -8.2928 -1.1203 21 14 11.3383 -9.2409 -0.0597 22 1 10.9748 -9.8830 1.2291 23 1 11.3820 -10.2694 -1.1301 24 1 12.6719 -8.5999 0.0653 25 6 7.9083 -5.7849 0.0015 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 2.3792 1.5834 -1.0277 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1384 0.5138 32 1 4.0096 -0.6528 0.8894 33 1 4.0089 -0.6539 -0.8905 34 1 3.5039 -3.2857 0.0008 35 1 8.2498 -2.8011 -0.8857 36 1 8.2746 -2.8232 0.8997 37 1 10.0998 -4.2802 0.9760 38 1 10.4036 -3.6673 -0.6827 39 1 8.9657 -6.3511 -2.4464 40 1 8.8101 -9.2207 -1.3591 41 1 7.3301 -6.4755 -0.6123 42 1 7.9946 -6.1626 1.0203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332173176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:31 Heat of formation + Delta-G solvation = -135.089420 kcal Electronic energy + Delta-G solvation = -26393.458969 eV Core-core repulsion = 22374.455026 eV Total energy + Delta-G solvation = -4019.003943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69709 -39.93688 -38.37255 -37.15849 -36.07841 -34.88246 -34.03043 -32.24155 -30.21356 -29.78721 -28.02620 -27.78830 -26.25807 -25.36327 -23.48282 -21.70909 -20.23221 -19.72859 -19.38482 -17.67535 -17.25921 -17.10113 -16.64121 -16.33356 -16.25106 -15.68497 -15.15811 -15.07643 -14.64582 -14.47526 -14.16681 -13.75699 -13.41054 -13.18759 -13.07823 -13.04687 -12.96638 -12.82773 -12.49990 -12.44946 -12.26828 -11.69002 -11.52772 -11.11662 -11.04040 -10.76425 -10.55409 -10.49070 -10.34665 -10.20778 -9.37946 -9.34843 -9.19868 -9.16583 -8.72204 -8.40639 -7.87582 -6.29256 -4.38904 1.77669 2.13278 2.24748 2.81160 3.20337 3.28729 3.32273 3.60182 3.91276 3.97430 4.26391 4.55812 4.70927 4.79980 4.86193 4.94099 4.96990 4.99475 5.16887 5.19814 5.39861 5.49857 5.79591 5.84919 5.89336 6.05900 6.07506 6.32076 6.53683 6.74298 6.76977 6.82685 6.87002 7.18071 7.24448 7.32868 7.62918 7.72775 7.85420 8.00063 8.05976 8.46494 8.65206 9.28731 9.34553 10.77286 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.035192 B = 0.002663 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.435739 B =10511.757234 C =11019.860971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.620 5.620 3 C 0.072 3.928 4 C 0.508 3.492 5 O -0.527 6.527 6 C 0.103 3.897 7 N -0.698 5.698 8 C 0.515 3.485 9 O -0.518 6.518 10 C 0.509 3.491 11 O -0.532 6.532 12 N -0.574 5.574 13 C 0.111 3.889 14 C -0.121 4.121 15 C 0.248 3.752 16 O -0.581 6.581 17 C -0.538 4.538 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.892 5.892 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.092 3.908 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.423 0.577 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.381 0.619 40 H 0.270 0.730 41 H 0.092 0.908 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 18.419 2.550 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.355 5.355 3 C -0.071 4.071 4 C 0.295 3.705 5 O -0.403 6.403 6 C -0.025 4.025 7 N -0.357 5.357 8 C 0.296 3.704 9 O -0.394 6.394 10 C 0.291 3.709 11 O -0.411 6.411 12 N -0.307 5.307 13 C -0.011 4.011 14 C -0.159 4.159 15 C 0.207 3.793 16 O -0.389 6.389 17 C -0.576 4.576 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.530 5.530 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.028 4.028 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.230 0.770 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.407 18.508 2.575 22.430 hybrid contribution 0.015 -1.426 0.166 1.436 sum -12.392 17.082 2.741 21.280 Atomic orbital electron populations 1.21687 0.78512 1.03435 1.02138 1.47660 1.07455 1.06238 1.74142 1.21941 0.97551 0.85022 1.02589 1.20574 0.89979 0.83702 0.76258 1.90750 1.69767 1.30778 1.48990 1.21132 0.90713 0.85589 1.05032 1.45482 1.07470 1.08431 1.74284 1.20451 0.82324 0.90588 0.77008 1.90719 1.55016 1.45942 1.47676 1.19407 0.82747 0.88372 0.80411 1.90753 1.54398 1.45351 1.50558 1.48669 1.03694 1.11351 1.66950 1.22152 0.87090 0.90359 1.01539 1.22718 0.94940 0.96975 1.01282 1.19640 0.89373 0.90987 0.79277 1.86127 1.91254 1.40630 1.20875 1.21464 1.10227 0.91389 1.34523 0.91343 1.25097 0.95357 0.98792 0.94050 1.69748 1.24208 1.18978 1.40084 0.86383 0.81599 0.80752 0.78141 1.20529 1.20930 1.19617 1.23536 0.96485 0.80914 1.01890 0.92462 0.90954 0.90259 0.91870 0.90480 0.90392 0.87948 0.87899 0.73684 0.91187 0.91754 0.90351 0.90517 0.76977 0.91956 0.88996 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.44 59.85 0.62 1.15 16 2 N -0.62 -4.64 3.27 -189.51 -0.62 -5.26 16 3 C 0.07 0.28 10.24 59.85 0.61 0.89 16 4 C 0.51 5.48 7.74 -10.98 -0.09 5.39 16 5 O -0.53 -7.71 15.25 5.56 0.08 -7.62 16 6 C 0.10 1.06 4.71 -5.19 -0.02 1.04 16 7 N -0.70 -10.10 5.52 -61.90 -0.34 -10.44 16 8 C 0.51 8.88 7.86 -11.58 -0.09 8.79 16 9 O -0.52 -9.09 14.12 5.50 0.08 -9.01 16 10 C 0.51 10.55 7.91 -11.58 -0.09 10.46 16 11 O -0.53 -12.23 16.73 5.50 0.09 -12.14 16 12 N -0.57 -12.33 3.33 -170.98 -0.57 -12.90 16 13 C 0.11 2.14 5.49 -3.04 -0.02 2.12 16 14 C -0.12 -2.46 6.13 -24.87 -0.15 -2.61 16 15 C 0.25 5.99 0.88 -89.61 -0.08 5.91 16 16 O -0.58 -14.73 13.17 -35.23 -0.46 -15.19 16 17 C -0.54 -13.84 8.25 -34.44 -0.28 -14.12 16 18 H 0.07 1.72 7.79 -52.49 -0.41 1.32 16 19 C 0.07 1.82 5.27 -17.82 -0.09 1.72 16 20 N -0.89 -23.56 10.70 55.43 0.59 -22.97 16 21 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.09 2.22 5.40 -2.51 -0.01 2.21 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 28 H 0.08 0.63 7.42 -51.93 -0.39 0.24 16 29 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 31 H 0.08 0.26 6.44 -51.93 -0.33 -0.07 16 32 H 0.10 0.89 7.40 -51.93 -0.38 0.51 16 33 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.42 6.59 6.91 -40.82 -0.28 6.30 16 35 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 36 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 37 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 38 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 39 H 0.38 9.84 7.54 45.56 0.34 10.19 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.09 2.45 7.31 -51.93 -0.38 2.07 16 42 H 0.07 1.67 8.03 -51.93 -0.42 1.25 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -31.89 352.41 -5.67 -37.56 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.12 Total: 14.54 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 0.31 Total: 22.96 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.94 Total: -51.57 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.21 Total: -43.97 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.89 -5.67 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332173176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.525 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds