Wall clock time and date at job start Fri Apr 10 2020 18:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99914 * 2 1 4 4 C 1.34776 * 119.99798 * 179.97438 * 2 1 3 5 5 O 1.21280 * 120.00092 * 0.02562 * 4 2 1 6 6 C 1.50706 * 119.99626 * 179.97438 * 4 2 1 7 7 N 1.46504 * 109.46780 * 180.02562 * 6 4 2 8 8 C 1.34777 * 119.99827 * 180.02562 * 7 6 4 9 9 O 1.21345 * 120.00010 * 359.97438 * 8 7 6 10 10 C 1.49454 * 119.99788 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00202 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99788 * 179.97438 * 10 8 7 13 13 C 1.47027 * 125.64867 * 359.95106 * 12 10 8 14 14 C 1.54367 * 107.28564 * 181.13053 * 13 12 10 15 15 C 1.55156 * 102.92264 * 22.14605 * 14 13 12 16 16 O 1.42894 * 111.00661 * 82.63741 * 15 14 13 17 17 C 1.50705 * 111.00010 * 206.45343 * 15 14 13 18 18 H 1.07993 * 120.00222 * 356.17881 * 17 15 14 19 19 C 1.37881 * 119.99392 * 175.90919 * 17 15 14 20 20 N 1.31509 * 120.00570 * 354.23595 * 19 17 15 21 21 Si 1.86801 * 119.99492 * 174.24147 * 19 17 15 22 22 H 1.48500 * 109.47445 * 94.98741 * 21 19 17 23 23 H 1.48506 * 109.47043 * 214.98367 * 21 19 17 24 24 H 1.48496 * 109.47404 * 334.97778 * 21 19 17 25 25 C 1.47424 * 125.64700 * 179.97438 * 12 10 8 26 26 H 1.08994 * 109.46795 * 270.00176 * 1 2 3 27 27 H 1.09001 * 109.46760 * 30.00116 * 1 2 3 28 28 H 1.09000 * 109.46963 * 149.99879 * 1 2 3 29 29 H 1.09008 * 109.47174 * 269.99950 * 3 2 1 30 30 H 1.08998 * 109.47447 * 29.99674 * 3 2 1 31 31 H 1.09002 * 109.47333 * 150.00088 * 3 2 1 32 32 H 1.08995 * 109.47099 * 60.00523 * 6 4 2 33 33 H 1.09002 * 109.47191 * 299.99997 * 6 4 2 34 34 H 0.96999 * 120.00200 * 359.97438 * 7 6 4 35 35 H 1.08996 * 109.88083 * 300.51793 * 13 12 10 36 36 H 1.09004 * 109.88118 * 61.68271 * 13 12 10 37 37 H 1.08998 * 110.70797 * 263.79195 * 14 13 12 38 38 H 1.09008 * 110.75397 * 140.50586 * 14 13 12 39 39 H 0.96708 * 113.99643 * 183.17930 * 16 15 14 40 40 H 0.96998 * 120.00806 * 180.02562 * 20 19 17 41 41 H 1.09000 * 110.36750 * 36.99474 * 25 12 10 42 42 H 1.08997 * 110.36842 * 274.66920 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 7 4.1342 -2.5484 0.0001 8 6 5.4593 -2.7947 0.0001 9 8 6.2479 -1.8724 -0.0004 10 6 5.9575 -4.2038 0.0008 11 8 5.1689 -5.1261 0.0018 12 7 7.2825 -4.4501 0.0004 13 6 8.3433 -3.4320 -0.0018 14 6 9.6946 -4.1777 -0.0306 15 6 9.3134 -5.5643 -0.6130 16 8 9.2479 -5.5202 -2.0398 17 6 10.2772 -6.6272 -0.1520 18 1 11.1331 -6.3564 0.4483 19 6 10.0630 -7.9462 -0.4919 20 7 8.9610 -8.2928 -1.1203 21 14 11.3383 -9.2409 -0.0597 22 1 10.9748 -9.8830 1.2291 23 1 11.3820 -10.2694 -1.1301 24 1 12.6719 -8.5999 0.0653 25 6 7.9083 -5.7849 0.0015 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 2.3792 1.5834 -1.0277 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1384 0.5138 32 1 4.0096 -0.6528 0.8894 33 1 4.0089 -0.6539 -0.8905 34 1 3.5039 -3.2857 0.0008 35 1 8.2498 -2.8011 -0.8857 36 1 8.2746 -2.8232 0.8997 37 1 10.0998 -4.2802 0.9760 38 1 10.4036 -3.6673 -0.6827 39 1 8.9657 -6.3511 -2.4464 40 1 8.8101 -9.2207 -1.3591 41 1 7.3301 -6.4755 -0.6123 42 1 7.9946 -6.1626 1.0203 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332173176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:30 Heat of formation + Delta-G solvation = -161.881133 kcal Electronic energy + Delta-G solvation = -26394.620745 eV Core-core repulsion = 22374.455026 eV Total energy + Delta-G solvation = -4020.165719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95136 -41.04451 -39.87871 -38.88758 -36.79391 -36.36538 -35.52515 -34.23284 -31.95042 -30.62006 -29.67783 -28.52189 -27.62113 -26.54143 -25.01408 -23.19837 -21.57035 -21.29034 -20.44498 -19.19622 -18.93080 -18.25848 -17.56299 -17.54450 -17.35873 -17.03010 -16.98784 -16.36495 -16.22287 -15.85629 -15.37367 -14.93830 -14.81698 -14.66738 -14.40089 -14.22317 -13.94858 -13.68960 -13.56494 -13.44431 -13.33944 -13.29036 -12.87998 -12.82990 -12.72253 -12.51895 -12.33691 -12.23155 -12.09980 -11.20921 -11.17735 -10.78169 -10.64289 -10.51548 -10.32422 -9.79207 -9.63896 -8.24754 -6.41631 0.28915 1.10655 1.33988 1.43320 1.46551 1.56633 1.92485 2.07474 2.37902 2.51225 3.00660 3.24139 3.31636 3.77808 4.07028 4.12094 4.16392 4.19720 4.31057 4.35097 4.40500 4.50105 4.67337 4.74276 4.77965 4.90208 4.91843 4.99034 5.00689 5.07914 5.16816 5.36042 5.38498 5.44340 5.75117 5.87895 6.04619 6.12641 6.34389 6.54443 6.67375 6.86580 6.90010 7.26585 7.33503 8.80269 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.035192 B = 0.002663 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.435739 B =10511.757234 C =11019.860971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.612 5.612 3 C 0.063 3.937 4 C 0.503 3.497 5 O -0.577 6.577 6 C 0.101 3.899 7 N -0.690 5.690 8 C 0.526 3.474 9 O -0.519 6.519 10 C 0.500 3.500 11 O -0.564 6.564 12 N -0.581 5.581 13 C 0.117 3.883 14 C -0.114 4.114 15 C 0.232 3.768 16 O -0.586 6.586 17 C -0.555 4.555 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.965 3.035 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.265 1.265 25 C 0.105 3.895 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.418 0.582 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.374 0.626 40 H 0.270 0.730 41 H 0.057 0.943 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.890 21.102 3.183 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.345 5.345 3 C -0.079 4.079 4 C 0.291 3.709 5 O -0.457 6.457 6 C -0.024 4.024 7 N -0.346 5.346 8 C 0.306 3.694 9 O -0.395 6.395 10 C 0.283 3.717 11 O -0.444 6.444 12 N -0.313 5.313 13 C -0.004 4.004 14 C -0.152 4.152 15 C 0.192 3.808 16 O -0.393 6.393 17 C -0.593 4.593 18 H 0.090 0.910 19 C -0.174 4.174 20 N -0.553 5.553 21 Si 0.791 3.209 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.017 4.017 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.256 0.744 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.222 0.778 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.051 21.295 3.213 24.679 hybrid contribution -0.195 -2.176 -0.037 2.185 sum -12.246 19.119 3.177 22.926 Atomic orbital electron populations 1.21822 0.77821 1.03863 1.02677 1.47810 1.08130 1.06492 1.72057 1.22252 0.98008 0.83645 1.03948 1.20681 0.90100 0.84026 0.76138 1.90735 1.70525 1.32683 1.51784 1.21448 0.90639 0.83216 1.07136 1.45488 1.06183 1.10306 1.72631 1.19599 0.83282 0.88526 0.77975 1.90716 1.55171 1.45079 1.48504 1.20170 0.82214 0.90052 0.79254 1.90728 1.55112 1.46922 1.51644 1.48716 1.04610 1.10785 1.67186 1.22225 0.85674 0.89681 1.02836 1.22734 0.95879 0.94644 1.01961 1.19874 0.89164 0.93166 0.78605 1.86119 1.91227 1.40179 1.21821 1.21768 1.10650 0.92149 1.34702 0.91015 1.25831 0.96898 1.00684 0.94035 1.69867 1.25497 1.19184 1.40801 0.85430 0.79527 0.78295 0.77686 1.20340 1.20966 1.18960 1.23121 0.96454 0.81832 1.00317 0.91887 0.87817 0.92517 0.90578 0.88235 0.89538 0.85490 0.85847 0.74367 0.90892 0.89316 0.88859 0.89415 0.77783 0.92085 0.92488 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.44 127.77 1.33 2.19 16 2 N -0.61 -7.79 3.27 -871.88 -2.85 -10.64 16 3 C 0.06 0.27 10.24 127.77 1.31 1.57 16 4 C 0.50 10.22 7.74 87.66 0.68 10.90 16 5 O -0.58 -17.08 15.25 -3.03 -0.05 -17.12 16 6 C 0.10 1.87 4.71 85.63 0.40 2.27 16 7 N -0.69 -19.28 5.52 -468.13 -2.58 -21.86 16 8 C 0.53 17.51 7.86 87.27 0.69 18.19 16 9 O -0.52 -16.90 14.12 -3.23 -0.05 -16.95 16 10 C 0.50 20.86 7.91 87.27 0.69 21.55 16 11 O -0.56 -26.74 16.73 -3.23 -0.05 -26.79 16 12 N -0.58 -24.95 3.33 -813.22 -2.70 -27.66 16 13 C 0.12 4.32 5.49 86.74 0.48 4.80 16 14 C -0.11 -4.47 6.13 31.80 0.19 -4.28 16 15 C 0.23 11.27 0.88 -10.14 -0.01 11.26 16 16 O -0.59 -30.12 13.17 -148.98 -1.96 -32.09 16 17 C -0.55 -28.53 8.25 25.60 0.21 -28.32 16 18 H 0.07 3.56 7.79 -2.91 -0.02 3.54 16 19 C 0.03 1.38 5.27 84.66 0.45 1.83 16 20 N -0.91 -49.47 10.70 21.45 0.23 -49.24 16 21 Si 0.97 41.44 29.54 68.60 2.03 43.47 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 C 0.10 5.17 5.40 86.86 0.47 5.64 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.10 0.45 8.07 -2.39 -0.02 0.43 16 28 H 0.06 0.89 7.42 -2.39 -0.02 0.87 16 29 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.10 0.03 8.07 -2.39 -0.02 0.01 16 31 H 0.09 0.25 6.44 -2.39 -0.02 0.24 16 32 H 0.13 1.78 7.40 -2.39 -0.02 1.76 16 33 H 0.12 1.83 8.11 -2.39 -0.02 1.82 16 34 H 0.42 13.08 6.91 -92.71 -0.64 12.44 16 35 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 36 H 0.09 2.86 7.69 -2.39 -0.02 2.84 16 37 H 0.09 3.34 8.03 -2.39 -0.02 3.32 16 38 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 39 H 0.37 19.97 7.54 -74.05 -0.56 19.41 16 40 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.06 3.19 7.31 -2.39 -0.02 3.17 16 42 H 0.06 2.83 8.03 -2.39 -0.02 2.81 16 Total: -1.00 -70.35 352.41 -1.24 -71.59 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.13 Total: 39.69 kcal Atomic # 6 Polarization: 40.72 SS G_CDS: 6.89 Total: 47.60 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -7.91 Total: -109.40 kcal Atomic # 8 Polarization: -90.84 SS G_CDS: -2.11 Total: -92.95 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -70.35 -1.24 -71.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332173176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.294 kcal (2) G-P(sol) polarization free energy of solvation -70.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds