Wall clock time and date at job start Fri Apr 10 2020 18:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.49871 * 2 1 4 4 C 1.53193 * 109.49710 * 239.93807 * 2 1 3 5 5 N 1.46934 * 108.77570 * 294.68625 * 4 2 1 6 6 C 1.34782 * 120.62818 * 126.11589 * 5 4 2 7 7 O 1.21582 * 120.00113 * 354.77061 * 6 5 4 8 8 N 1.34773 * 119.99426 * 174.76757 * 6 5 4 9 9 C 1.46508 * 119.99710 * 184.97875 * 8 6 5 10 10 C 1.50701 * 109.46975 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00034 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99726 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99656 * 179.97438 * 12 10 9 14 14 H 1.07996 * 120.00231 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99356 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00395 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99560 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46954 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46909 * 119.99874 * 17 15 13 20 20 H 1.48500 * 109.47348 * 239.99984 * 17 15 13 21 21 C 1.46919 * 118.73827 * 306.39328 * 5 4 2 22 22 C 1.53188 * 108.77731 * 53.60486 * 21 5 4 23 23 C 1.53040 * 109.31623 * 305.36605 * 22 21 5 24 24 H 1.09000 * 109.44646 * 301.35132 * 23 22 21 25 25 C 1.50700 * 109.46388 * 181.38425 * 23 22 21 26 26 O 1.20817 * 120.00093 * 239.93568 * 25 23 22 27 27 O 1.34227 * 119.99711 * 59.92948 * 25 23 22 28 28 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46886 * 300.06276 * 1 2 3 30 30 H 1.09000 * 109.46581 * 60.06229 * 1 2 3 31 31 H 1.08995 * 109.59025 * 174.90099 * 4 2 1 32 32 H 1.09000 * 109.58936 * 54.47156 * 4 2 1 33 33 H 0.97000 * 120.00147 * 4.98383 * 8 6 5 34 34 H 1.09005 * 109.46760 * 300.00431 * 9 8 6 35 35 H 1.08997 * 109.46744 * 60.00166 * 9 8 6 36 36 H 0.97001 * 119.99883 * 359.97438 * 12 10 9 37 37 H 0.97002 * 119.99661 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58882 * 173.39530 * 21 5 4 39 39 H 1.09008 * 109.58624 * 293.81700 * 21 5 4 40 40 H 1.09000 * 109.49516 * 185.41243 * 22 21 5 41 41 H 1.09005 * 109.52365 * 65.33633 * 22 21 5 42 42 H 0.96695 * 116.99731 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6515 -2.1378 -1.1703 6 6 0.9695 -2.7198 -2.1767 7 8 0.5882 -2.0521 -3.1186 8 7 0.7102 -4.0418 -2.1389 9 6 0.0658 -4.6948 -3.2812 10 6 -0.1106 -6.1622 -2.9871 11 8 0.2654 -6.6179 -1.9278 12 7 -0.6853 -6.9685 -3.9016 13 6 -0.8452 -8.3036 -3.6342 14 1 -0.5104 -8.7093 -2.6910 15 6 -1.4381 -9.1346 -4.5768 16 7 -1.8460 -8.6408 -5.7242 17 14 -1.6555 -10.9539 -4.2128 18 1 -1.1178 -11.2561 -2.8619 19 1 -3.0992 -11.2989 -4.2590 20 1 -0.9229 -11.7528 -5.2278 21 6 2.0138 -2.9041 0.0297 22 6 1.5029 -2.1562 1.2652 23 6 2.0408 -0.7236 1.2481 24 1 3.1305 -0.7452 1.2349 25 6 1.5679 0.0051 2.4796 26 8 0.8920 1.0005 2.3703 27 8 1.8977 -0.4520 3.6978 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8894 30 1 -0.3632 0.5129 -0.8906 31 1 3.1275 -0.6460 -1.2983 32 1 1.6008 -0.2724 -2.1390 33 1 0.9501 -4.5609 -1.3554 34 1 -0.9091 -4.2400 -3.4571 35 1 0.6884 -4.5737 -4.1676 36 1 -0.9856 -6.6041 -4.7489 37 1 -2.2596 -9.2211 -6.3824 38 1 1.5552 -3.8919 -0.0151 39 1 3.0978 -3.0045 0.0857 40 1 1.8480 -2.6637 2.1661 41 1 0.4131 -2.1359 1.2539 42 1 1.5708 0.0487 4.4577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335186902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:36 Heat of formation + Delta-G solvation = -153.967314 kcal Electronic energy + Delta-G solvation = -26407.893058 eV Core-core repulsion = 22388.070508 eV Total energy + Delta-G solvation = -4019.822550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.25727 -40.11037 -38.47212 -37.63032 -36.45242 -34.55074 -33.91439 -33.32096 -32.00079 -31.37231 -27.99543 -27.68356 -25.96516 -24.32983 -23.34620 -22.46503 -20.42165 -19.68281 -18.95761 -18.47210 -18.37120 -17.90964 -16.89645 -16.11033 -16.05483 -15.80765 -15.51722 -15.06790 -14.62951 -14.52672 -14.37652 -14.04374 -13.83724 -13.73167 -13.45581 -13.32437 -13.06041 -12.30495 -12.20981 -12.10784 -11.88509 -11.82489 -11.75206 -11.63583 -11.28527 -11.14936 -10.90706 -10.84461 -10.53274 -10.41584 -10.33141 -9.94737 -9.65384 -8.95580 -8.63492 -8.48709 -8.10617 -6.52031 -3.94037 1.84792 2.60714 2.72396 3.09688 3.22035 3.28537 3.34320 3.74360 3.95447 4.12788 4.16285 4.31150 4.55562 4.70428 4.86226 4.92402 4.96841 5.04169 5.16832 5.25335 5.32245 5.36892 5.51999 5.56765 5.61795 5.78480 5.87512 5.93191 5.94367 6.00614 6.07648 6.12692 6.32874 6.45598 6.74209 6.99563 7.45641 7.55223 7.92060 8.13224 8.44480 8.75602 9.04142 9.39074 9.86668 10.64936 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.027290 B = 0.002547 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.779465 B =10991.835101 C =11601.528676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 H 0.090 0.910 4 C 0.136 3.864 5 N -0.631 5.631 6 C 0.709 3.291 7 O -0.593 6.593 8 N -0.725 5.725 9 C 0.127 3.873 10 C 0.429 3.571 11 O -0.599 6.599 12 N -0.549 5.549 13 C -0.304 4.304 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.112 3.888 22 C -0.130 4.130 23 C -0.074 4.074 24 H 0.111 0.889 25 C 0.483 3.517 26 O -0.509 6.509 27 O -0.516 6.516 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.406 0.594 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 15.863 13.684 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 H 0.108 0.892 4 C 0.012 3.988 5 N -0.369 5.369 6 C 0.411 3.589 7 O -0.472 6.472 8 N -0.385 5.385 9 C -0.001 4.001 10 C 0.215 3.785 11 O -0.486 6.486 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.012 4.012 22 C -0.168 4.168 23 C -0.093 4.093 24 H 0.129 0.871 25 C 0.325 3.675 26 O -0.396 6.396 27 O -0.328 6.328 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.246 0.754 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 8.540 15.942 13.112 22.338 hybrid contribution -0.443 -0.614 0.531 0.924 sum 8.097 15.328 13.643 22.060 Atomic orbital electron populations 1.22019 0.93799 1.02344 1.03081 1.21430 0.97954 0.99320 0.92280 0.89212 1.21503 0.99076 0.79697 0.98506 1.47181 1.59961 1.11459 1.18318 1.15731 0.78689 0.81979 0.82530 1.90894 1.57805 1.63067 1.35413 1.44970 1.65033 1.07012 1.21437 1.20800 0.98727 0.92047 0.88566 1.19756 0.85191 0.87292 0.86281 1.90480 1.55976 1.76131 1.25995 1.41799 1.51442 1.08516 1.16633 1.19771 1.37271 0.82781 1.03535 0.87631 1.25330 0.96538 1.00894 0.94999 1.69624 1.40026 1.36959 1.06841 0.85762 0.78013 0.81593 0.78735 1.19135 1.20623 1.20615 1.21642 1.00684 0.95261 0.83612 1.22000 1.02513 0.92868 0.99425 1.21101 1.02714 0.96053 0.89452 0.87066 1.23528 0.76548 0.82679 0.84707 1.90686 1.35936 1.25931 1.87073 1.84545 1.72962 1.58369 1.16940 0.92551 0.90924 0.92265 0.91492 0.87996 0.75421 0.89964 0.90050 0.77006 0.91633 0.89105 0.90703 0.89141 0.90214 0.73234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.40 37.16 0.31 -1.40 16 2 C -0.09 -0.80 2.36 -90.50 -0.21 -1.02 16 3 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 4 C 0.14 1.35 5.84 -3.71 -0.02 1.32 16 5 N -0.63 -7.46 2.41 -178.50 -0.43 -7.89 16 6 C 0.71 11.37 8.29 -86.92 -0.72 10.65 16 7 O -0.59 -11.37 15.77 5.29 0.08 -11.29 16 8 N -0.72 -12.09 5.44 -66.41 -0.36 -12.45 16 9 C 0.13 2.35 6.16 -5.19 -0.03 2.32 16 10 C 0.43 9.73 7.85 -10.98 -0.09 9.64 16 11 O -0.60 -15.03 15.24 5.55 0.08 -14.94 16 12 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 13 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 14 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 16 N -0.89 -23.79 13.05 55.50 0.72 -23.07 16 17 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.11 1.02 6.39 -3.72 -0.02 0.99 16 22 C -0.13 -1.01 4.95 -26.61 -0.13 -1.15 16 23 C -0.07 -0.55 2.37 -91.73 -0.22 -0.77 16 24 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 25 C 0.48 4.08 7.34 36.01 0.26 4.34 16 26 O -0.51 -5.74 14.51 -18.74 -0.27 -6.01 16 27 O -0.52 -3.22 13.30 -39.25 -0.52 -3.74 16 28 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 29 H 0.07 0.85 5.65 -51.93 -0.29 0.55 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.20 6.99 -51.93 -0.36 0.84 16 33 H 0.41 6.54 4.93 -40.82 -0.20 6.34 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.09 0.92 5.65 -51.93 -0.29 0.62 16 39 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.08 0.74 6.33 -51.93 -0.33 0.41 16 42 H 0.41 0.99 9.10 45.56 0.41 1.41 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -33.69 344.00 -6.28 -39.97 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -4.58 Total: 15.30 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: -1.11 Total: 17.16 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.13 Total: -56.98 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.63 Total: -35.98 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.69 -6.28 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335186902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.997 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds