Wall clock time and date at job start Fri Apr 10 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.49871 * 2 1 4 4 C 1.53193 * 109.49710 * 239.93807 * 2 1 3 5 5 N 1.46934 * 108.77570 * 294.68625 * 4 2 1 6 6 C 1.34782 * 120.62818 * 126.11589 * 5 4 2 7 7 O 1.21582 * 120.00113 * 354.77061 * 6 5 4 8 8 N 1.34773 * 119.99426 * 174.76757 * 6 5 4 9 9 C 1.46508 * 119.99710 * 184.97875 * 8 6 5 10 10 C 1.50701 * 109.46975 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00034 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99726 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99656 * 179.97438 * 12 10 9 14 14 H 1.07996 * 120.00231 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99356 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00395 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99560 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46954 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46909 * 119.99874 * 17 15 13 20 20 H 1.48500 * 109.47348 * 239.99984 * 17 15 13 21 21 C 1.46919 * 118.73827 * 306.39328 * 5 4 2 22 22 C 1.53188 * 108.77731 * 53.60486 * 21 5 4 23 23 C 1.53040 * 109.31623 * 305.36605 * 22 21 5 24 24 H 1.09000 * 109.44646 * 301.35132 * 23 22 21 25 25 C 1.50700 * 109.46388 * 181.38425 * 23 22 21 26 26 O 1.20817 * 120.00093 * 239.93568 * 25 23 22 27 27 O 1.34227 * 119.99711 * 59.92948 * 25 23 22 28 28 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46886 * 300.06276 * 1 2 3 30 30 H 1.09000 * 109.46581 * 60.06229 * 1 2 3 31 31 H 1.08995 * 109.59025 * 174.90099 * 4 2 1 32 32 H 1.09000 * 109.58936 * 54.47156 * 4 2 1 33 33 H 0.97000 * 120.00147 * 4.98383 * 8 6 5 34 34 H 1.09005 * 109.46760 * 300.00431 * 9 8 6 35 35 H 1.08997 * 109.46744 * 60.00166 * 9 8 6 36 36 H 0.97001 * 119.99883 * 359.97438 * 12 10 9 37 37 H 0.97002 * 119.99661 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.58882 * 173.39530 * 21 5 4 39 39 H 1.09008 * 109.58624 * 293.81700 * 21 5 4 40 40 H 1.09000 * 109.49516 * 185.41243 * 22 21 5 41 41 H 1.09005 * 109.52365 * 65.33633 * 22 21 5 42 42 H 0.96695 * 116.99731 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6515 -2.1378 -1.1703 6 6 0.9695 -2.7198 -2.1767 7 8 0.5882 -2.0521 -3.1186 8 7 0.7102 -4.0418 -2.1389 9 6 0.0658 -4.6948 -3.2812 10 6 -0.1106 -6.1622 -2.9871 11 8 0.2654 -6.6179 -1.9278 12 7 -0.6853 -6.9685 -3.9016 13 6 -0.8452 -8.3036 -3.6342 14 1 -0.5104 -8.7093 -2.6910 15 6 -1.4381 -9.1346 -4.5768 16 7 -1.8460 -8.6408 -5.7242 17 14 -1.6555 -10.9539 -4.2128 18 1 -1.1178 -11.2561 -2.8619 19 1 -3.0992 -11.2989 -4.2590 20 1 -0.9229 -11.7528 -5.2278 21 6 2.0138 -2.9041 0.0297 22 6 1.5029 -2.1562 1.2652 23 6 2.0408 -0.7236 1.2481 24 1 3.1305 -0.7452 1.2349 25 6 1.5679 0.0051 2.4796 26 8 0.8920 1.0005 2.3703 27 8 1.8977 -0.4520 3.6978 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8894 30 1 -0.3632 0.5129 -0.8906 31 1 3.1275 -0.6460 -1.2983 32 1 1.6008 -0.2724 -2.1390 33 1 0.9501 -4.5609 -1.3554 34 1 -0.9091 -4.2400 -3.4571 35 1 0.6884 -4.5737 -4.1676 36 1 -0.9856 -6.6041 -4.7489 37 1 -2.2596 -9.2211 -6.3824 38 1 1.5552 -3.8919 -0.0151 39 1 3.0978 -3.0045 0.0857 40 1 1.8480 -2.6637 2.1661 41 1 0.4131 -2.1359 1.2539 42 1 1.5708 0.0487 4.4577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335186902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:35 Heat of formation + Delta-G solvation = -179.390832 kcal Electronic energy + Delta-G solvation = -26408.995504 eV Core-core repulsion = 22388.070508 eV Total energy + Delta-G solvation = -4020.924996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.05391 -41.14596 -40.12675 -38.69396 -37.09101 -36.25779 -35.44604 -34.38489 -33.34730 -32.77442 -29.46060 -28.47047 -27.20618 -26.00152 -24.09797 -23.19816 -21.57830 -21.29376 -20.23640 -19.81976 -19.29814 -18.98991 -17.71161 -17.36041 -17.20167 -16.98893 -16.72934 -16.43170 -16.13551 -15.87817 -15.57407 -15.24479 -15.04608 -14.80072 -14.47521 -14.27113 -13.97558 -13.82729 -13.54339 -13.52118 -12.97413 -12.89741 -12.87711 -12.66530 -12.45318 -12.42908 -12.10037 -12.04835 -11.65894 -11.59155 -11.56825 -11.35195 -11.13165 -10.54127 -10.28251 -10.08289 -9.50780 -8.50051 -6.00106 1.21927 1.36088 1.43409 1.53592 1.60051 1.90541 2.06183 2.18806 2.29047 2.85011 3.16909 3.17427 3.47448 3.62006 3.92498 3.95297 4.16802 4.21536 4.31722 4.36349 4.44190 4.47064 4.56706 4.61049 4.69879 4.72339 4.84282 4.87771 5.07761 5.09787 5.15150 5.33120 5.34454 5.40322 5.56064 5.71314 5.88388 5.93637 6.48961 6.91718 7.03549 7.04631 7.43213 7.52706 7.95297 8.67180 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.027290 B = 0.002547 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.779465 B =10991.835101 C =11601.528676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.101 0.899 4 C 0.134 3.866 5 N -0.623 5.623 6 C 0.706 3.294 7 O -0.629 6.629 8 N -0.726 5.726 9 C 0.140 3.860 10 C 0.435 3.565 11 O -0.623 6.623 12 N -0.560 5.560 13 C -0.334 4.334 14 H 0.087 0.913 15 C -0.012 4.012 16 N -0.917 5.917 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.271 1.271 21 C 0.108 3.892 22 C -0.122 4.122 23 C -0.071 4.071 24 H 0.144 0.856 25 C 0.488 3.512 26 O -0.543 6.543 27 O -0.510 6.510 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.409 0.591 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.398 0.602 37 H 0.279 0.721 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.227 15.808 14.926 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.119 0.881 4 C 0.012 3.988 5 N -0.360 5.360 6 C 0.407 3.593 7 O -0.511 6.511 8 N -0.386 5.386 9 C 0.012 3.988 10 C 0.222 3.778 11 O -0.511 6.511 12 N -0.196 5.196 13 C -0.464 4.464 14 H 0.105 0.895 15 C -0.212 4.212 16 N -0.558 5.558 17 Si 0.820 3.180 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.015 4.015 22 C -0.161 4.161 23 C -0.090 4.090 24 H 0.161 0.839 25 C 0.332 3.668 26 O -0.433 6.433 27 O -0.324 6.324 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.078 0.922 42 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.079 15.910 14.408 23.713 hybrid contribution -0.890 -0.523 0.241 1.060 sum 9.189 15.387 14.649 23.147 Atomic orbital electron populations 1.21949 0.95822 1.00944 1.02048 1.21353 0.96105 1.00107 0.92740 0.88092 1.21660 1.00759 0.78330 0.98070 1.47267 1.58443 1.12293 1.17977 1.15867 0.78859 0.81441 0.83098 1.90868 1.59378 1.63647 1.37203 1.44896 1.65263 1.07460 1.20998 1.20582 0.99541 0.89038 0.89672 1.20381 0.83391 0.88684 0.85314 1.90456 1.56513 1.77182 1.26905 1.41850 1.52286 1.08253 1.17166 1.19774 1.38963 0.84152 1.03489 0.89460 1.26138 0.95663 1.04852 0.94587 1.69691 1.40174 1.38476 1.07411 0.84809 0.78222 0.76441 0.78496 1.19282 1.19781 1.19661 1.21875 1.02427 0.94445 0.82712 1.21933 1.01332 0.93234 0.99571 1.21106 1.04456 0.95105 0.88286 0.83865 1.23606 0.75689 0.82033 0.85457 1.90687 1.37506 1.27554 1.87593 1.84499 1.72567 1.58365 1.16960 0.94090 0.91598 0.93588 0.88261 0.90225 0.75030 0.89444 0.88994 0.76743 0.91112 0.90284 0.87668 0.86996 0.92185 0.71247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.40 71.98 0.60 -2.73 16 2 C -0.08 -1.35 2.36 -10.71 -0.03 -1.38 16 3 H 0.10 1.47 8.07 -2.39 -0.02 1.45 16 4 C 0.13 2.43 5.84 86.36 0.50 2.94 16 5 N -0.62 -13.87 2.41 -836.90 -2.02 -15.89 16 6 C 0.71 22.38 8.29 179.05 1.49 23.86 16 7 O -0.63 -24.30 15.77 -3.97 -0.06 -24.36 16 8 N -0.73 -24.02 5.44 -482.28 -2.62 -26.64 16 9 C 0.14 5.19 6.16 85.63 0.53 5.72 16 10 C 0.44 19.93 7.85 87.66 0.69 20.61 16 11 O -0.62 -31.52 15.24 -3.05 -0.05 -31.56 16 12 N -0.56 -28.00 5.29 -306.99 -1.62 -29.62 16 13 C -0.33 -18.28 9.68 84.04 0.81 -17.46 16 14 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 15 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 16 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 17 Si 1.00 41.47 29.55 68.60 2.03 43.50 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 C 0.11 1.71 6.39 86.36 0.55 2.26 16 22 C -0.12 -1.62 4.95 30.67 0.15 -1.47 16 23 C -0.07 -0.85 2.37 -11.51 -0.03 -0.88 16 24 H 0.14 0.90 8.14 -2.39 -0.02 0.89 16 25 C 0.49 7.13 7.34 71.24 0.52 7.65 16 26 O -0.54 -11.59 14.51 21.99 0.32 -11.27 16 27 O -0.51 -4.90 13.30 -51.39 -0.68 -5.58 16 28 H 0.04 1.01 5.97 -2.39 -0.01 1.00 16 29 H 0.07 1.56 5.65 -2.39 -0.01 1.54 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.85 6.99 -2.39 -0.02 1.84 16 33 H 0.41 13.04 4.93 -92.71 -0.46 12.58 16 34 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 35 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 37 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 38 H 0.08 1.48 5.65 -2.38 -0.01 1.47 16 39 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.11 1.06 8.08 -2.39 -0.02 1.04 16 41 H 0.06 1.06 6.33 -2.38 -0.02 1.04 16 42 H 0.43 1.00 9.10 -74.06 -0.67 0.32 16 Total: -1.00 -73.27 344.00 1.08 -72.20 By element: Atomic # 1 Polarization: 39.45 SS G_CDS: -0.76 Total: 38.69 kcal Atomic # 6 Polarization: 32.71 SS G_CDS: 6.26 Total: 38.97 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -5.98 Total: -120.57 kcal Atomic # 8 Polarization: -72.31 SS G_CDS: -0.47 Total: -72.78 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -73.27 1.08 -72.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335186902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.196 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds