Wall clock time and date at job start Fri Apr 10 2020 18:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47106 * 2 1 4 4 O 1.42907 * 109.46992 * 239.99913 * 2 1 3 5 5 C 1.53003 * 109.47360 * 119.99917 * 2 1 3 6 6 C 1.50695 * 109.47079 * 59.99934 * 5 2 1 7 7 O 1.21278 * 120.00236 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99833 * 180.02562 * 6 5 2 9 9 C 1.47019 * 125.65061 * 359.97311 * 8 6 5 10 10 C 1.54322 * 107.27223 * 181.07843 * 9 8 6 11 11 C 1.55154 * 102.94204 * 22.19795 * 10 9 8 12 12 H 1.08999 * 111.00353 * 82.56825 * 11 10 9 13 13 N 1.46905 * 111.00511 * 206.42293 * 11 10 9 14 14 C 1.46905 * 110.99514 * 267.19338 * 13 11 10 15 15 C 1.50704 * 109.46854 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99413 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99976 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99788 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99896 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00089 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99832 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47025 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46873 * 119.99989 * 22 20 18 25 25 H 1.48494 * 109.47459 * 240.00225 * 22 20 18 26 26 C 1.47426 * 125.64729 * 180.02562 * 8 6 5 27 27 H 1.08995 * 109.46781 * 299.99647 * 1 2 3 28 28 H 1.08992 * 109.47097 * 59.99988 * 1 2 3 29 29 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47345 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46847 * 299.99704 * 3 2 1 32 32 H 1.08997 * 109.47479 * 59.99888 * 3 2 1 33 33 H 0.96701 * 113.99543 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46800 * 299.99852 * 5 2 1 35 35 H 1.08996 * 109.47130 * 180.02562 * 5 2 1 36 36 H 1.09001 * 109.88389 * 300.50344 * 9 8 6 37 37 H 1.09003 * 109.87977 * 61.66684 * 9 8 6 38 38 H 1.08999 * 110.71849 * 140.55494 * 10 9 8 39 39 H 1.08995 * 110.72403 * 263.65428 * 10 9 8 40 40 H 1.00897 * 110.99686 * 31.14471 * 13 11 10 41 41 H 1.09000 * 109.47399 * 300.00002 * 14 13 11 42 42 H 1.09002 * 109.47116 * 60.00238 * 14 13 11 43 43 H 0.96995 * 119.99996 * 0.02562 * 17 15 14 44 44 H 0.97003 * 119.99690 * 180.02562 * 21 20 18 45 45 H 1.08998 * 110.36718 * 274.68923 * 26 8 6 46 46 H 1.09005 * 110.36600 * 37.01484 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0401 -0.7212 1.2493 6 6 1.5378 -2.1420 1.2493 7 8 0.8409 -2.5389 0.3395 8 7 1.8630 -2.9717 2.2604 9 6 2.6965 -2.6234 3.4203 10 6 2.8173 -3.8894 4.2944 11 6 2.5150 -5.0341 3.2917 12 1 3.4039 -5.2958 2.7179 13 7 1.9723 -6.2108 3.9839 14 6 3.0431 -7.1498 4.3441 15 6 2.4497 -8.3411 5.0512 16 8 1.2525 -8.4019 5.2363 17 7 3.2492 -9.3386 5.4778 18 6 2.7093 -10.4221 6.1215 19 1 1.6434 -10.4763 6.2864 20 6 3.5336 -11.4508 6.5608 21 7 4.8306 -11.3850 6.3598 22 14 2.7980 -12.9274 7.4373 23 1 1.3257 -12.7609 7.5371 24 1 3.1053 -14.1616 6.6708 25 1 3.3780 -13.0337 8.8001 26 6 1.4428 -4.3792 2.3859 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 2.9704 -0.7115 -1.2331 34 1 1.6768 -0.2074 2.1392 35 1 3.1301 -0.7208 1.2494 36 1 3.6848 -2.3083 3.0855 37 1 2.2233 -1.8235 3.9899 38 1 3.8258 -3.9855 4.6966 39 1 2.0825 -3.8740 5.0993 40 1 1.4412 -5.9387 4.7975 41 1 3.5551 -7.4811 3.4407 42 1 3.7548 -6.6536 5.0039 43 1 4.2066 -9.2897 5.3300 44 1 5.4059 -12.1034 6.6661 45 1 0.4608 -4.4416 2.8548 46 1 1.4281 -4.8594 1.4074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182220265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:38 Heat of formation + Delta-G solvation = -119.065841 kcal Electronic energy + Delta-G solvation = -25923.902412 eV Core-core repulsion = 22041.426398 eV Total energy + Delta-G solvation = -3882.476014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52303 -38.89839 -38.12440 -37.14785 -34.77808 -33.82291 -32.97965 -31.30339 -30.83639 -29.51601 -28.15606 -27.60616 -26.00492 -24.00688 -23.25583 -21.19992 -20.72870 -19.49313 -19.30679 -17.95539 -17.51590 -16.85425 -16.61913 -15.99602 -15.69347 -15.23914 -14.93617 -14.78870 -14.54460 -14.52829 -14.03413 -13.71897 -13.61327 -13.13611 -13.13407 -12.87841 -12.58919 -12.52318 -12.44670 -12.34868 -12.12046 -12.04515 -11.68912 -11.67400 -11.51093 -11.37844 -11.07685 -11.05885 -10.97618 -10.41361 -10.35812 -10.24746 -9.71416 -9.54574 -8.80134 -8.50567 -8.12880 -7.98885 -6.44326 -3.85129 2.49916 2.72539 3.14912 3.25850 3.33176 3.86890 3.91317 3.99678 4.16943 4.22869 4.31889 4.43905 4.51105 4.62318 4.73719 4.82270 4.98524 5.05757 5.08193 5.10216 5.19324 5.23142 5.24136 5.30096 5.46974 5.55140 5.58456 5.66671 5.69010 5.73446 5.79042 5.88344 5.89487 5.93977 6.07004 6.22999 6.25000 7.10739 7.35509 7.45107 7.53316 7.54861 8.03778 8.06636 8.58145 9.15430 9.51231 10.02340 10.73395 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.045095 B = 0.001954 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.765155 B =14326.856366 C =14468.157764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 C -0.178 4.178 4 O -0.543 6.543 5 C -0.165 4.165 6 C 0.527 3.473 7 O -0.515 6.515 8 N -0.623 5.623 9 C 0.105 3.895 10 C -0.166 4.166 11 C 0.079 3.921 12 H 0.092 0.908 13 N -0.656 5.656 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.117 3.883 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.368 0.632 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.354 0.646 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.074 0.926 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 25.407 -7.579 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.103 3.897 3 C -0.236 4.236 4 O -0.347 6.347 5 C -0.206 4.206 6 C 0.316 3.684 7 O -0.390 6.390 8 N -0.360 5.360 9 C -0.019 4.019 10 C -0.206 4.206 11 C -0.033 4.033 12 H 0.111 0.889 13 N -0.288 5.288 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.006 4.006 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.214 0.786 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.174 0.826 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.391 24.649 -8.643 26.124 hybrid contribution 1.623 -0.122 1.472 2.195 sum 1.232 24.528 -7.170 25.584 Atomic orbital electron populations 1.21995 0.92253 1.05264 1.01498 1.20915 0.95709 0.89555 0.83551 1.22521 1.01339 0.96634 1.03107 1.86732 1.25688 1.79347 1.42923 1.22466 1.02650 0.93840 1.01599 1.20097 0.80730 0.86938 0.80663 1.90709 1.37169 1.76544 1.34589 1.48560 1.51958 1.12875 1.22558 1.21949 0.94885 0.98028 0.86997 1.23440 1.03468 0.95092 0.98608 1.22738 0.96906 0.88860 0.94837 0.88942 1.59894 1.23719 1.12921 1.32256 1.21708 0.92887 0.93523 0.99921 1.19782 0.87605 0.85200 0.84915 1.90534 1.14975 1.80197 1.60978 1.41864 1.09448 1.17729 1.50929 1.19762 0.94962 0.96036 1.32095 0.87824 1.25273 0.95202 0.99403 0.98108 1.69621 1.03151 1.34325 1.47192 0.85793 0.79331 0.80543 0.78640 1.19193 1.20721 1.20774 1.22142 0.97950 0.79646 1.00885 0.92052 0.92215 0.88980 0.92326 0.91380 0.91521 0.78596 0.88303 0.88900 0.91473 0.91477 0.89810 0.90018 0.82553 0.89445 0.93663 0.77458 0.91908 0.90766 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.52 37.16 0.32 -1.14 16 2 C 0.14 1.17 0.98 -90.62 -0.09 1.08 16 3 C -0.18 -0.97 8.81 37.16 0.33 -0.64 16 4 O -0.54 -5.50 11.88 -53.50 -0.64 -6.13 16 5 C -0.17 -1.19 4.14 -27.88 -0.12 -1.30 16 6 C 0.53 5.96 7.41 -10.99 -0.08 5.88 16 7 O -0.51 -7.92 13.21 -12.71 -0.17 -8.09 16 8 N -0.62 -6.48 3.33 -170.54 -0.57 -7.04 16 9 C 0.11 0.77 6.49 -3.07 -0.02 0.75 16 10 C -0.17 -1.42 6.54 -24.90 -0.16 -1.58 16 11 C 0.08 0.89 3.38 -65.57 -0.22 0.67 16 12 H 0.09 1.03 7.83 -51.93 -0.41 0.62 16 13 N -0.66 -9.93 6.04 -105.73 -0.64 -10.57 16 14 C 0.05 0.87 6.03 -4.97 -0.03 0.84 16 15 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 16 O -0.58 -15.61 15.78 5.55 0.09 -15.52 16 17 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.12 1.43 6.60 -2.54 -0.02 1.41 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.17 5.51 -51.93 -0.29 0.88 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.37 2.29 9.05 45.56 0.41 2.71 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.71 7.76 -51.93 -0.40 0.31 16 40 H 0.35 5.47 7.89 -39.29 -0.31 5.16 16 41 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -34.42 376.58 -7.76 -42.18 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.74 Total: 13.17 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -0.42 Total: 8.08 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.54 Total: -55.25 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.72 Total: -29.75 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.42 -7.76 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182220265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.883 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds