Wall clock time and date at job start Fri Apr 10 2020 18:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34632 * 116.99497 * 2 1 4 4 O 1.21511 * 120.00754 * 0.27100 * 3 2 1 5 5 N 1.34784 * 119.99600 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99971 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47276 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99595 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99847 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63690 * 359.97438 * 9 7 6 11 11 C 1.53182 * 108.77673 * 126.37212 * 10 9 7 12 12 C 1.53036 * 109.31462 * 54.63857 * 11 10 9 13 13 H 1.09005 * 109.46241 * 58.64125 * 12 11 10 14 14 C 1.53008 * 109.46206 * 178.61259 * 12 11 10 15 15 N 1.46500 * 109.46952 * 295.00025 * 14 12 11 16 16 C 1.36943 * 119.99406 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00383 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99309 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00438 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99390 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47160 * 60.00251 * 20 18 16 22 22 H 1.48502 * 109.46686 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46983 * 299.99792 * 20 18 16 24 24 C 1.53041 * 109.53888 * 298.63477 * 12 11 10 25 25 H 1.09002 * 109.49489 * 301.41296 * 24 12 11 26 26 C 1.52998 * 109.49901 * 181.34552 * 24 12 11 27 27 C 1.46931 * 120.62805 * 179.71898 * 9 7 6 28 28 H 1.09001 * 109.46406 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46907 * 299.99877 * 1 2 3 30 30 H 1.08995 * 109.46854 * 60.00322 * 1 2 3 31 31 H 0.96999 * 120.00044 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.47024 * 300.00310 * 6 5 3 33 33 H 1.09005 * 109.47136 * 59.99926 * 6 5 3 34 34 H 1.09002 * 109.58784 * 246.16507 * 10 9 7 35 35 H 1.09001 * 109.58307 * 6.58737 * 10 9 7 36 36 H 1.09000 * 109.49796 * 174.58930 * 11 10 9 37 37 H 1.09003 * 109.50341 * 294.65246 * 11 10 9 38 38 H 1.09002 * 109.46962 * 54.99948 * 14 12 11 39 39 H 1.08995 * 109.47129 * 175.00057 * 14 12 11 40 40 H 0.96997 * 120.00473 * 0.02562 * 15 14 12 41 41 H 0.96993 * 120.00373 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47053 * 60.00320 * 26 24 12 43 43 H 1.08996 * 109.47061 * 179.97438 * 26 24 12 44 44 H 1.09001 * 109.47398 * 300.00105 * 26 24 12 45 45 H 1.09000 * 109.58391 * 353.41279 * 27 9 7 46 46 H 1.09005 * 109.58744 * 113.84095 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0050 5 7 3.4092 1.2702 -0.0005 6 6 4.0743 2.5755 -0.0011 7 6 5.5682 2.3782 -0.0022 8 8 6.0318 1.2574 -0.0021 9 7 6.3891 3.4470 -0.0024 10 6 5.8426 4.8108 -0.0020 11 6 6.4579 5.5883 1.1656 12 6 7.9838 5.5229 1.0691 13 1 8.3058 5.9420 0.1158 14 6 8.6021 6.3274 2.2144 15 7 8.2639 7.7438 2.0543 16 6 8.7105 8.6617 2.9672 17 1 9.3123 8.3415 3.8048 18 6 8.3896 10.0037 2.8157 19 7 7.6566 10.3940 1.7947 20 14 8.9982 11.2558 4.0614 21 1 10.4828 11.2430 4.0912 22 1 8.5219 12.6086 3.6765 23 1 8.4730 10.9108 5.4069 24 6 8.4407 4.0654 1.1651 25 1 8.0978 3.6380 2.1074 26 6 9.9682 4.0038 1.1022 27 6 7.8478 3.2706 0.0027 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9375 0.4567 -0.0005 32 1 3.7810 3.1323 -0.8911 33 1 3.7817 3.1328 0.8889 34 1 6.0915 5.3045 -0.9414 35 1 4.7598 4.7704 0.1162 36 1 6.1349 6.6284 1.1206 37 1 6.1333 5.1470 2.1080 38 1 8.2107 5.9656 3.1652 39 1 9.6854 6.2085 2.1985 40 1 7.7231 8.0314 1.3022 41 1 7.4320 11.3317 1.6891 42 1 10.3892 4.5717 1.9319 43 1 10.2931 2.9657 1.1711 44 1 10.3105 4.4303 0.1593 45 1 8.0877 2.2143 0.1240 46 1 8.2634 3.6364 -0.9363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183975590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:48 Heat of formation + Delta-G solvation = -108.021926 kcal Electronic energy + Delta-G solvation = -26417.440813 eV Core-core repulsion = 22535.443699 eV Total energy + Delta-G solvation = -3881.997114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94525 -40.29918 -38.32165 -36.89402 -35.14787 -34.89657 -33.67697 -32.05136 -30.39103 -29.38614 -27.58454 -26.96372 -25.87490 -23.75597 -22.60808 -21.78354 -21.34453 -20.21288 -19.65217 -18.81806 -17.44195 -17.12143 -16.96146 -16.65246 -16.31076 -15.85323 -15.01948 -14.76359 -14.56689 -14.32535 -14.23651 -13.96170 -13.73021 -13.50092 -13.44032 -12.95906 -12.76551 -12.56052 -12.49880 -12.36970 -11.98541 -11.88017 -11.67018 -11.08978 -11.02682 -10.96292 -10.92798 -10.82834 -10.45466 -10.41762 -10.23795 -10.08221 -9.95001 -9.66116 -9.64499 -8.88235 -8.76466 -6.92578 -5.78477 -3.06497 1.73976 2.25676 2.51077 2.79235 3.42924 3.47570 3.48300 3.95680 4.08669 4.56781 4.72055 4.82378 4.86089 4.88025 4.90468 4.94596 4.97949 5.04591 5.17079 5.23066 5.36835 5.45098 5.55402 5.62946 5.71815 5.74297 5.79727 5.85556 5.92602 6.00819 6.04010 6.15470 6.23727 6.27740 6.36574 6.44892 6.57878 6.79834 6.89467 7.04825 7.13791 7.68300 7.79434 7.99702 8.41016 9.52114 10.10095 10.44525 11.44427 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.002603 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.923138 B =10755.492296 C =12009.955068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.571 6.571 5 N -0.698 5.698 6 C 0.118 3.882 7 C 0.512 3.488 8 O -0.544 6.544 9 N -0.600 5.600 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.089 4.089 13 H 0.073 0.927 14 C 0.156 3.844 15 N -0.732 5.732 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.098 4.098 25 H 0.073 0.927 26 C -0.147 4.147 27 C 0.118 3.882 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.418 0.582 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.016 0.984 39 H 0.024 0.976 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -20.357 -6.278 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.402 3.598 4 O -0.460 6.460 5 N -0.361 5.361 6 C -0.008 4.008 7 C 0.299 3.701 8 O -0.422 6.422 9 N -0.332 5.332 10 C -0.023 4.023 11 C -0.165 4.165 12 C -0.108 4.108 13 H 0.092 0.908 14 C 0.029 3.971 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.117 4.117 25 H 0.091 0.909 26 C -0.205 4.205 27 C -0.004 4.004 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.257 0.743 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.042 0.958 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.321 -20.387 -6.145 22.861 hybrid contribution 0.207 0.753 0.481 0.917 sum -8.115 -19.634 -5.664 21.987 Atomic orbital electron populations 1.23231 0.74085 1.03578 1.02906 1.86248 1.24389 1.30762 1.87026 1.17964 0.83036 0.82335 0.76416 1.91030 1.64631 1.34774 1.55561 1.44214 1.03289 1.10393 1.78154 1.21096 0.89513 0.84742 1.05495 1.20291 0.88488 0.84803 0.76511 1.90688 1.77150 1.23434 1.50959 1.48076 1.07057 1.06249 1.71810 1.22023 0.98649 0.81059 1.00542 1.21946 0.95783 1.01541 0.97229 1.21350 0.94702 0.93953 1.00832 0.90847 1.20753 0.96627 0.85431 0.94297 1.42365 1.63386 1.00850 1.31008 1.19176 1.26201 0.87939 1.03692 0.91347 1.24721 1.00779 0.97090 0.98380 1.69629 1.42346 1.15691 1.30648 0.86279 0.78303 0.80884 0.80791 1.21311 1.21699 1.21310 1.21393 0.96071 0.95858 0.98417 0.90863 1.21829 0.94325 1.01388 1.02916 1.21685 0.77990 1.01855 0.98870 0.87865 0.91681 0.91721 0.74339 0.87813 0.87643 0.90424 0.89691 0.88957 0.91612 0.96582 0.95783 0.78311 0.93472 0.91224 0.92974 0.92445 0.89064 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.71 10.62 -40.30 -0.43 -4.14 16 3 C 0.65 7.63 8.75 54.06 0.47 8.10 16 4 O -0.57 -8.15 16.13 -19.28 -0.31 -8.46 16 5 N -0.70 -7.32 5.53 -66.47 -0.37 -7.69 16 6 C 0.12 1.16 4.50 -5.20 -0.02 1.13 16 7 C 0.51 5.84 7.77 -10.99 -0.09 5.75 16 8 O -0.54 -7.55 15.08 5.56 0.08 -7.47 16 9 N -0.60 -6.57 2.98 -173.01 -0.52 -7.08 16 10 C 0.10 1.03 6.34 -3.72 -0.02 1.01 16 11 C -0.13 -1.70 5.25 -26.62 -0.14 -1.84 16 12 C -0.09 -1.29 1.73 -90.58 -0.16 -1.45 16 13 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.16 2.95 5.41 -4.04 -0.02 2.93 16 15 N -0.73 -17.66 5.32 -59.90 -0.32 -17.98 16 16 C -0.24 -6.54 9.99 -15.05 -0.15 -6.69 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.10 -1.18 2.40 -90.71 -0.22 -1.40 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 C -0.15 -1.66 8.82 37.16 0.33 -1.33 16 27 C 0.12 1.31 5.69 -3.91 -0.02 1.29 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.42 4.22 7.55 -40.82 -0.31 3.91 16 32 H 0.10 0.91 7.94 -51.93 -0.41 0.50 16 33 H 0.11 0.99 7.69 -51.93 -0.40 0.59 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 36 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.46 6.14 -51.93 -0.32 0.15 16 40 H 0.38 9.60 6.85 -40.82 -0.28 9.32 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -33.24 370.54 -6.92 -40.17 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.28 Total: 8.35 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 0.93 Total: 8.47 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.48 Total: -59.63 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.66 Total: -20.07 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.24 -6.92 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183975590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.857 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds