Wall clock time and date at job start Fri Apr 10 2020 18:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34632 * 116.99497 * 2 1 4 4 O 1.21511 * 120.00754 * 0.27100 * 3 2 1 5 5 N 1.34784 * 119.99600 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99971 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47276 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99595 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99847 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63690 * 359.97438 * 9 7 6 11 11 C 1.53182 * 108.77673 * 126.37212 * 10 9 7 12 12 C 1.53036 * 109.31462 * 54.63857 * 11 10 9 13 13 H 1.09005 * 109.46241 * 58.64125 * 12 11 10 14 14 C 1.53008 * 109.46206 * 178.61259 * 12 11 10 15 15 N 1.46500 * 109.46952 * 295.00025 * 14 12 11 16 16 C 1.36943 * 119.99406 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00383 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99309 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00438 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99390 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47160 * 60.00251 * 20 18 16 22 22 H 1.48502 * 109.46686 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46983 * 299.99792 * 20 18 16 24 24 C 1.53041 * 109.53888 * 298.63477 * 12 11 10 25 25 H 1.09002 * 109.49489 * 301.41296 * 24 12 11 26 26 C 1.52998 * 109.49901 * 181.34552 * 24 12 11 27 27 C 1.46931 * 120.62805 * 179.71898 * 9 7 6 28 28 H 1.09001 * 109.46406 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46907 * 299.99877 * 1 2 3 30 30 H 1.08995 * 109.46854 * 60.00322 * 1 2 3 31 31 H 0.96999 * 120.00044 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.47024 * 300.00310 * 6 5 3 33 33 H 1.09005 * 109.47136 * 59.99926 * 6 5 3 34 34 H 1.09002 * 109.58784 * 246.16507 * 10 9 7 35 35 H 1.09001 * 109.58307 * 6.58737 * 10 9 7 36 36 H 1.09000 * 109.49796 * 174.58930 * 11 10 9 37 37 H 1.09003 * 109.50341 * 294.65246 * 11 10 9 38 38 H 1.09002 * 109.46962 * 54.99948 * 14 12 11 39 39 H 1.08995 * 109.47129 * 175.00057 * 14 12 11 40 40 H 0.96997 * 120.00473 * 0.02562 * 15 14 12 41 41 H 0.96993 * 120.00373 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47053 * 60.00320 * 26 24 12 43 43 H 1.08996 * 109.47061 * 179.97438 * 26 24 12 44 44 H 1.09001 * 109.47398 * 300.00105 * 26 24 12 45 45 H 1.09000 * 109.58391 * 353.41279 * 27 9 7 46 46 H 1.09005 * 109.58744 * 113.84095 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0050 5 7 3.4092 1.2702 -0.0005 6 6 4.0743 2.5755 -0.0011 7 6 5.5682 2.3782 -0.0022 8 8 6.0318 1.2574 -0.0021 9 7 6.3891 3.4470 -0.0024 10 6 5.8426 4.8108 -0.0020 11 6 6.4579 5.5883 1.1656 12 6 7.9838 5.5229 1.0691 13 1 8.3058 5.9420 0.1158 14 6 8.6021 6.3274 2.2144 15 7 8.2639 7.7438 2.0543 16 6 8.7105 8.6617 2.9672 17 1 9.3123 8.3415 3.8048 18 6 8.3896 10.0037 2.8157 19 7 7.6566 10.3940 1.7947 20 14 8.9982 11.2558 4.0614 21 1 10.4828 11.2430 4.0912 22 1 8.5219 12.6086 3.6765 23 1 8.4730 10.9108 5.4069 24 6 8.4407 4.0654 1.1651 25 1 8.0978 3.6380 2.1074 26 6 9.9682 4.0038 1.1022 27 6 7.8478 3.2706 0.0027 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9375 0.4567 -0.0005 32 1 3.7810 3.1323 -0.8911 33 1 3.7817 3.1328 0.8889 34 1 6.0915 5.3045 -0.9414 35 1 4.7598 4.7704 0.1162 36 1 6.1349 6.6284 1.1206 37 1 6.1333 5.1470 2.1080 38 1 8.2107 5.9656 3.1652 39 1 9.6854 6.2085 2.1985 40 1 7.7231 8.0314 1.3022 41 1 7.4320 11.3317 1.6891 42 1 10.3892 4.5717 1.9319 43 1 10.2931 2.9657 1.1711 44 1 10.3105 4.4303 0.1593 45 1 8.0877 2.2143 0.1240 46 1 8.2634 3.6364 -0.9363 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183975590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:47 Heat of formation + Delta-G solvation = -132.137310 kcal Electronic energy + Delta-G solvation = -26418.486534 eV Core-core repulsion = 22535.443699 eV Total energy + Delta-G solvation = -3883.042835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83038 -41.20812 -39.39103 -37.72161 -36.60658 -35.79693 -35.05267 -33.44762 -32.01273 -30.21971 -28.41064 -28.21557 -26.83054 -25.44356 -23.81381 -22.80681 -22.46154 -21.24797 -20.62304 -19.73702 -19.11118 -18.24687 -17.77103 -17.58903 -17.21146 -16.78513 -16.64911 -15.81702 -15.71488 -15.49558 -15.26588 -15.11145 -14.99760 -14.67840 -14.43994 -14.08857 -14.01068 -13.80835 -13.53079 -13.11520 -12.96625 -12.93463 -12.88374 -12.78079 -12.65624 -12.22187 -11.94379 -11.89961 -11.87482 -11.82023 -11.61651 -11.51258 -11.16059 -11.02420 -10.84285 -10.48360 -9.72717 -8.94213 -7.93138 -5.20272 0.97323 1.36414 1.48248 1.50303 1.56446 1.62623 1.92675 2.57509 3.19619 3.25316 3.40291 3.70515 3.77418 3.86107 4.01554 4.18715 4.20012 4.26945 4.33081 4.35730 4.38459 4.42254 4.55167 4.65005 4.68999 4.69707 4.77244 4.82175 4.85425 4.96064 5.02717 5.12656 5.15866 5.21760 5.28726 5.29438 5.38478 5.48649 5.53346 5.61467 6.20143 6.24377 6.30067 6.89692 7.15254 7.36835 8.14118 8.37766 9.29952 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.002603 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.923138 B =10755.492296 C =12009.955068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.375 6.375 3 C 0.649 3.351 4 O -0.600 6.600 5 N -0.694 5.694 6 C 0.119 3.881 7 C 0.516 3.484 8 O -0.569 6.569 9 N -0.598 5.598 10 C 0.107 3.893 11 C -0.123 4.123 12 C -0.080 4.080 13 H 0.071 0.929 14 C 0.156 3.844 15 N -0.741 5.741 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.966 5.966 20 Si 0.969 3.031 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.280 1.280 24 C -0.088 4.088 25 H 0.066 0.934 26 C -0.145 4.145 27 C 0.121 3.879 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.420 0.580 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.009 0.991 39 H 0.025 0.975 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 -21.573 -6.524 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.402 3.598 4 O -0.491 6.491 5 N -0.356 5.356 6 C -0.007 4.007 7 C 0.304 3.696 8 O -0.449 6.449 9 N -0.330 5.330 10 C -0.015 4.015 11 C -0.161 4.161 12 C -0.099 4.099 13 H 0.089 0.911 14 C 0.029 3.971 15 N -0.384 5.384 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.265 4.265 19 N -0.617 5.617 20 Si 0.798 3.202 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.207 1.207 24 C -0.107 4.107 25 H 0.085 0.915 26 C -0.202 4.202 27 C -0.001 4.001 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.259 0.741 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.043 0.957 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.405 -21.648 -6.377 24.082 hybrid contribution 0.246 1.044 0.588 1.223 sum -8.159 -20.604 -5.789 22.904 Atomic orbital electron populations 1.23551 0.72389 1.05775 1.02800 1.86264 1.26073 1.29782 1.86656 1.18088 0.83208 0.82445 0.76029 1.91007 1.65270 1.35796 1.57075 1.44231 1.03025 1.10759 1.77590 1.21164 0.88278 0.84744 1.06521 1.20469 0.89008 0.84335 0.75762 1.90682 1.77679 1.24368 1.52156 1.48088 1.07048 1.06355 1.71460 1.22004 0.99662 0.80303 0.99537 1.21839 0.95150 1.00590 0.98532 1.21237 0.95221 0.94773 0.98624 0.91102 1.20899 0.96901 0.83413 0.95851 1.42544 1.63115 1.02584 1.30203 1.19556 1.25355 0.88781 1.03961 0.91137 1.25486 1.01704 0.98969 1.00390 1.69774 1.43936 1.15599 1.32398 0.85284 0.77974 0.78205 0.78734 1.20547 1.22126 1.20650 1.21285 0.96731 0.93989 0.98729 0.91548 1.21801 0.93519 1.02395 1.02514 1.21651 0.78111 1.01512 0.98792 0.84555 0.91931 0.91737 0.74080 0.86314 0.86991 0.89205 0.87510 0.91414 0.92156 0.97265 0.95670 0.79131 0.94008 0.92684 0.91151 0.91991 0.89169 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -7.02 10.62 -55.42 -0.59 -7.61 16 3 C 0.65 14.54 8.75 129.79 1.14 15.67 16 4 O -0.60 -16.59 16.13 19.81 0.32 -16.27 16 5 N -0.69 -13.61 5.53 -594.60 -3.29 -16.90 16 6 C 0.12 2.11 4.50 85.63 0.39 2.50 16 7 C 0.52 10.81 7.77 87.66 0.68 11.49 16 8 O -0.57 -14.91 15.08 -3.03 -0.05 -14.95 16 9 N -0.60 -11.88 2.98 -819.69 -2.44 -14.33 16 10 C 0.11 2.01 6.34 86.36 0.55 2.56 16 11 C -0.12 -3.22 5.25 30.67 0.16 -3.06 16 12 C -0.08 -2.25 1.73 -10.77 -0.02 -2.26 16 13 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 14 C 0.16 5.88 5.41 86.38 0.47 6.35 16 15 N -0.74 -36.19 5.32 -343.44 -1.83 -38.01 16 16 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 17 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 19 N -0.97 -57.82 13.06 21.65 0.28 -57.54 16 20 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 C -0.09 -1.99 2.40 -10.85 -0.03 -2.02 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 C -0.14 -3.05 8.82 71.98 0.63 -2.42 16 27 C 0.12 2.45 5.69 86.23 0.49 2.94 16 28 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.42 7.97 7.55 -92.71 -0.70 7.27 16 32 H 0.12 1.80 7.94 -2.38 -0.02 1.78 16 33 H 0.11 1.89 7.69 -2.38 -0.02 1.88 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.58 5.93 -2.39 -0.01 1.56 16 36 H 0.07 2.14 7.15 -2.39 -0.02 2.12 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.03 0.96 6.14 -2.39 -0.01 0.95 16 40 H 0.38 19.20 6.85 -92.71 -0.63 18.57 16 41 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.05 1.32 6.29 -2.39 -0.02 1.31 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 1.92 7.01 -2.39 -0.02 1.90 16 46 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -70.91 370.54 1.07 -69.85 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.34 Total: 30.81 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.96 Total: 17.24 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -7.27 Total: -126.77 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.31 Total: -38.83 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.91 1.07 -69.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183975590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.291 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds