Wall clock time and date at job start Fri Apr 10 2020 18:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00076 * 2 1 4 4 H 1.09002 * 109.47097 * 29.99678 * 3 2 1 5 5 C 1.52999 * 109.46736 * 269.99949 * 3 2 1 6 6 C 1.50694 * 109.47151 * 149.99888 * 3 2 1 7 7 O 1.21282 * 120.00232 * 13.25347 * 6 3 2 8 8 N 1.34783 * 120.00143 * 193.25446 * 6 3 2 9 9 C 1.47023 * 125.64426 * 355.22933 * 8 6 3 10 10 C 1.54317 * 107.26990 * 181.02200 * 9 8 6 11 11 C 1.55156 * 102.94444 * 22.19427 * 10 9 8 12 12 H 1.09000 * 111.00960 * 82.56997 * 11 10 9 13 13 N 1.46895 * 111.00791 * 206.42532 * 11 10 9 14 14 C 1.46901 * 111.00516 * 174.58922 * 13 11 10 15 15 C 1.46905 * 111.00031 * 298.54264 * 13 11 10 16 16 C 1.50696 * 109.47272 * 169.99828 * 15 13 11 17 17 O 1.21296 * 120.00113 * 0.02562 * 16 15 13 18 18 N 1.34775 * 120.00163 * 180.02562 * 16 15 13 19 19 C 1.37095 * 120.00462 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99786 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00306 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99891 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00158 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47434 * 89.99889 * 23 21 19 25 25 H 1.48505 * 109.47104 * 209.99888 * 23 21 19 26 26 H 1.48497 * 109.47054 * 329.99724 * 23 21 19 27 27 C 1.47424 * 125.64883 * 175.18524 * 8 6 3 28 28 H 1.08996 * 109.47345 * 60.00506 * 1 2 3 29 29 H 1.08999 * 109.47609 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47359 * 300.00736 * 1 2 3 31 31 H 1.09006 * 109.47210 * 293.92401 * 5 3 2 32 32 H 1.08996 * 109.47640 * 53.92804 * 5 3 2 33 33 H 1.09000 * 109.46971 * 173.92963 * 5 3 2 34 34 H 1.09001 * 109.88555 * 61.60509 * 9 8 6 35 35 H 1.09001 * 109.88479 * 300.43818 * 9 8 6 36 36 H 1.08999 * 110.72245 * 140.55841 * 10 9 8 37 37 H 1.08998 * 110.72667 * 263.83093 * 10 9 8 38 38 H 1.09009 * 109.46996 * 59.99506 * 14 13 11 39 39 H 1.08996 * 109.47708 * 180.02562 * 14 13 11 40 40 H 1.08998 * 109.46966 * 300.00001 * 14 13 11 41 41 H 1.09001 * 109.47125 * 290.00013 * 15 13 11 42 42 H 1.09004 * 109.46768 * 49.99968 * 15 13 11 43 43 H 0.97004 * 119.99491 * 0.02562 * 18 16 15 44 44 H 0.97005 * 120.00146 * 180.02562 * 22 21 19 45 45 H 1.08993 * 110.36748 * 274.74264 * 27 8 6 46 46 H 1.08994 * 110.36511 * 37.07051 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3385 1.2639 0.7104 7 8 3.8607 0.1976 0.9582 8 7 3.9464 2.4117 1.0705 9 6 3.4779 3.7673 0.7474 10 6 4.5003 4.7590 1.3411 11 6 5.7829 3.8965 1.4766 12 1 6.3210 3.8450 0.5300 13 7 6.6507 4.4075 2.5460 14 6 7.8007 3.5191 2.7606 15 6 7.0916 5.7785 2.2562 16 6 7.7688 6.3561 3.4722 17 8 7.8743 5.6908 4.4810 18 7 8.2573 7.6117 3.4390 19 6 8.8730 8.1374 4.5454 20 1 8.9669 7.5450 5.4437 21 6 9.3761 9.4321 4.5113 22 7 9.2614 10.1530 3.4186 23 14 10.2156 10.1480 6.0187 24 1 11.6688 9.8475 5.9655 25 1 10.0150 11.6192 6.0451 26 1 9.6302 9.5466 7.2437 27 6 5.1907 2.5158 1.8543 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 2.9652 1.1408 -1.9240 32 1 1.2761 1.6986 -1.9868 33 1 2.5595 2.8063 -1.4445 34 1 2.4968 3.9362 1.1914 35 1 3.4243 3.8931 -0.3340 36 1 4.6674 5.5942 0.6609 37 1 4.1704 5.1153 2.3169 38 1 8.3827 3.4495 1.8415 39 1 8.4264 3.9206 3.5577 40 1 7.4462 2.5275 3.0421 41 1 7.7925 5.7660 1.4215 42 1 6.2279 6.3906 1.9962 43 1 8.1726 8.1438 2.6323 44 1 9.6130 11.0567 3.3946 45 1 4.9713 2.4762 2.9212 46 1 5.8807 1.7185 1.5782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189115850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:03 Heat of formation + Delta-G solvation = -121.339360 kcal Electronic energy + Delta-G solvation = -26452.935104 eV Core-core repulsion = 22570.360503 eV Total energy + Delta-G solvation = -3882.574601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47975 -40.40373 -39.31769 -38.32460 -36.77138 -35.77106 -33.26051 -33.07106 -31.58514 -30.27073 -28.76114 -27.72509 -27.04729 -25.92932 -24.51356 -23.38808 -21.53052 -20.87121 -20.46902 -19.80804 -18.60075 -17.93202 -17.80498 -17.18165 -16.89973 -16.58605 -16.27019 -16.16562 -15.94507 -15.46120 -15.24736 -15.11106 -14.78266 -14.74662 -14.19301 -14.04378 -13.80899 -13.72339 -13.52646 -13.40175 -13.27260 -13.03122 -12.88249 -12.77563 -12.59963 -12.40179 -12.23879 -12.12574 -12.11122 -11.85613 -11.78170 -11.43518 -11.09104 -10.58864 -10.26442 -9.96942 -9.75157 -9.26055 -8.44242 -5.92005 1.38965 1.43073 1.44661 1.54866 1.59538 2.09140 2.30068 2.72434 2.93058 3.22751 3.27889 3.43902 3.64429 3.65436 3.87927 3.98153 4.07476 4.17691 4.24885 4.33775 4.39324 4.45427 4.52981 4.54819 4.54964 4.58373 4.65735 4.71464 4.76815 4.81609 4.86059 4.87702 5.00151 5.09925 5.17767 5.19736 5.27142 5.43962 5.85266 6.03991 6.06804 6.18482 6.41648 6.64223 7.02399 7.16576 7.60471 8.16912 8.73001 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.037114 B = 0.002255 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.256876 B =12411.664717 C =12732.370974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.077 3.923 4 H 0.115 0.885 5 C -0.166 4.166 6 C 0.521 3.479 7 O -0.579 6.579 8 N -0.613 5.613 9 C 0.096 3.904 10 C -0.124 4.124 11 C 0.073 3.927 12 H 0.069 0.931 13 N -0.524 5.524 14 C 0.025 3.975 15 C 0.060 3.940 16 C 0.441 3.559 17 O -0.616 6.616 18 N -0.574 5.574 19 C -0.330 4.330 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.274 1.274 27 C 0.119 3.881 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.119 0.881 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.065 0.935 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.890 -9.655 -13.894 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.319 6.319 3 C 0.016 3.984 4 H 0.132 0.868 5 C -0.224 4.224 6 C 0.311 3.689 7 O -0.458 6.458 8 N -0.348 5.348 9 C -0.026 4.026 10 C -0.162 4.162 11 C -0.036 4.036 12 H 0.087 0.913 13 N -0.249 5.249 14 C -0.123 4.123 15 C -0.071 4.071 16 C 0.229 3.771 17 O -0.502 6.502 18 N -0.212 5.212 19 C -0.459 4.459 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.004 4.004 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.231 0.769 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.710 -10.697 -12.733 24.294 hybrid contribution 1.130 0.627 -0.024 1.293 sum -16.580 -10.070 -12.756 23.217 Atomic orbital electron populations 1.23106 0.78429 1.04224 1.01623 1.88007 1.22113 1.26555 1.95218 1.22013 0.91388 0.86891 0.98061 0.86773 1.22266 1.04283 1.02830 0.92995 1.20857 0.87422 0.82145 0.78522 1.90697 1.67185 1.31025 1.56919 1.48436 1.25719 1.06787 1.53898 1.22491 0.98996 0.78778 1.02293 1.22806 0.92322 0.97834 1.03221 1.22795 0.94338 0.93902 0.92585 0.91299 1.61518 1.19620 1.01062 1.42697 1.22422 0.92573 0.96788 1.00483 1.21739 1.00669 0.90688 0.93986 1.20794 0.83206 0.82352 0.90783 1.90480 1.62888 1.60899 1.35913 1.41912 1.51591 1.12849 1.14816 1.19616 1.34502 0.97987 0.93834 0.90486 1.25974 0.98128 0.96094 1.01049 1.69660 1.46798 1.11179 1.28388 0.84974 0.78363 0.77511 0.77777 1.19857 1.19553 1.19934 1.22042 0.85756 0.96932 0.95695 0.91509 0.88692 0.92824 0.93113 0.88908 0.88463 0.88604 0.87944 0.87132 0.90040 0.95035 0.92174 0.91136 0.91367 0.86278 0.76936 0.91368 0.91660 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.47 16 2 O -0.40 -8.47 9.92 -130.29 -1.29 -9.76 16 3 C 0.08 1.27 2.53 29.85 0.08 1.35 16 4 H 0.11 1.15 7.52 -2.39 -0.02 1.13 16 5 C -0.17 -1.79 9.39 71.98 0.68 -1.12 16 6 C 0.52 13.04 7.16 87.65 0.63 13.67 16 7 O -0.58 -20.85 16.79 15.66 0.26 -20.59 16 8 N -0.61 -12.69 3.33 -811.80 -2.70 -15.39 16 9 C 0.10 1.14 6.10 86.73 0.53 1.67 16 10 C -0.12 -1.92 5.31 31.78 0.17 -1.75 16 11 C 0.07 1.60 2.71 46.31 0.13 1.73 16 12 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 13 N -0.52 -15.93 4.40 -893.41 -3.93 -19.86 16 14 C 0.03 0.81 9.01 127.69 1.15 1.97 16 15 C 0.06 1.91 5.32 85.55 0.46 2.36 16 16 C 0.44 20.19 7.48 87.66 0.66 20.84 16 17 O -0.62 -33.25 13.91 -3.08 -0.04 -33.30 16 18 N -0.57 -28.48 5.29 -306.99 -1.62 -30.10 16 19 C -0.33 -18.37 9.68 84.04 0.81 -17.56 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 23 Si 0.99 42.49 29.55 68.60 2.03 44.51 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 C 0.12 2.95 5.40 86.86 0.47 3.42 16 28 H 0.07 0.43 7.77 -2.39 -0.02 0.41 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.48 8.09 -2.38 -0.02 0.46 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.09 0.63 7.77 -2.39 -0.02 0.61 16 33 H 0.10 0.59 5.72 -2.39 -0.01 0.58 16 34 H 0.10 0.76 8.00 -2.39 -0.02 0.74 16 35 H 0.10 0.67 6.05 -2.39 -0.01 0.65 16 36 H 0.11 1.21 7.88 -2.39 -0.02 1.19 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.06 2.42 5.82 -2.39 -0.01 2.41 16 40 H 0.07 2.09 7.15 -2.39 -0.02 2.08 16 41 H 0.07 1.93 8.12 -2.39 -0.02 1.92 16 42 H 0.12 3.11 6.73 -2.39 -0.02 3.09 16 43 H 0.40 18.50 7.90 -92.71 -0.73 17.77 16 44 H 0.28 13.70 8.31 -92.70 -0.77 12.93 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.06 1.72 7.86 -2.39 -0.02 1.70 16 Total: -1.00 -78.24 370.65 0.68 -77.56 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.26 Total: 27.30 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 7.44 Total: 27.83 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -7.97 Total: -113.56 kcal Atomic # 8 Polarization: -62.58 SS G_CDS: -1.07 Total: -63.65 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -78.24 0.68 -77.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189115850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.777 kcal (2) G-P(sol) polarization free energy of solvation -78.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds