Wall clock time and date at job start Fri Apr 10 2020 18:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99527 * 2 1 4 4 H 1.08998 * 109.47508 * 29.99993 * 3 2 1 5 5 C 1.53004 * 109.47359 * 270.00163 * 3 2 1 6 6 C 1.50704 * 109.47043 * 150.00399 * 3 2 1 7 7 O 1.21286 * 119.99667 * 8.84195 * 6 3 2 8 8 N 1.34774 * 120.00121 * 188.85112 * 6 3 2 9 9 C 1.47024 * 125.64804 * 4.77386 * 8 6 3 10 10 C 1.54322 * 107.26752 * 178.89718 * 9 8 6 11 11 C 1.55161 * 102.94713 * 337.80931 * 10 9 8 12 12 H 1.08998 * 111.00382 * 277.39128 * 11 10 9 13 13 N 1.46903 * 111.00437 * 153.57432 * 11 10 9 14 14 C 1.46901 * 110.99661 * 61.88297 * 13 11 10 15 15 C 1.46895 * 110.99733 * 185.83733 * 13 11 10 16 16 C 1.50700 * 109.46970 * 170.00274 * 15 13 11 17 17 O 1.21292 * 120.00085 * 359.97438 * 16 15 13 18 18 N 1.34774 * 119.99899 * 180.02562 * 16 15 13 19 19 C 1.37104 * 120.00109 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99585 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00368 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99780 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00342 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47439 * 89.99866 * 23 21 19 25 25 H 1.48500 * 109.47502 * 210.00445 * 23 21 19 26 26 H 1.48509 * 109.47038 * 330.00320 * 23 21 19 27 27 C 1.47430 * 125.64708 * 184.73013 * 8 6 3 28 28 H 1.08997 * 109.47205 * 59.99888 * 1 2 3 29 29 H 1.09006 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47208 * 299.99652 * 1 2 3 31 31 H 1.09005 * 109.46532 * 305.17674 * 5 3 2 32 32 H 1.08994 * 109.47236 * 65.17820 * 5 3 2 33 33 H 1.09000 * 109.46864 * 185.18410 * 5 3 2 34 34 H 1.09001 * 109.87577 * 59.48909 * 9 8 6 35 35 H 1.08991 * 110.01302 * 298.39174 * 9 8 6 36 36 H 1.08999 * 110.71931 * 219.44667 * 10 9 8 37 37 H 1.08999 * 110.72200 * 96.17310 * 10 9 8 38 38 H 1.09001 * 109.46525 * 189.55867 * 14 13 11 39 39 H 1.09001 * 109.46925 * 309.55300 * 14 13 11 40 40 H 1.09000 * 109.47071 * 69.55747 * 14 13 11 41 41 H 1.08998 * 109.47470 * 49.99920 * 15 13 11 42 42 H 1.09004 * 109.47188 * 289.99885 * 15 13 11 43 43 H 0.97001 * 120.00454 * 359.97438 * 18 16 15 44 44 H 0.96996 * 119.99849 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.36977 * 85.33112 * 27 8 6 46 46 H 1.09005 * 110.36433 * 323.00669 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2175 1.7715 -1.4425 6 6 3.3386 1.2640 0.7103 7 8 3.8227 0.1986 1.0293 8 7 3.9887 2.4107 0.9913 9 6 3.4749 3.7674 0.7529 10 6 4.5471 4.7579 1.2540 11 6 5.3619 3.9068 2.2635 12 1 4.8729 3.8812 3.2372 13 7 6.7387 4.4052 2.3817 14 6 6.7578 5.7831 2.8907 15 6 7.5482 3.5197 3.2293 16 6 8.9983 3.9180 3.1312 17 8 9.3253 4.8479 2.4244 18 7 9.9319 3.2405 3.8282 19 6 11.2512 3.6025 3.7386 20 1 11.5422 4.4310 3.1098 21 6 12.2136 2.9043 4.4574 22 7 11.8594 1.8966 5.2229 23 14 14.0111 3.3981 4.3359 24 1 14.3192 4.4067 5.3814 25 1 14.8677 2.2015 4.5347 26 1 14.2753 3.9788 2.9948 27 6 5.3323 2.5122 1.5895 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.8072 1.0305 -1.9824 32 1 1.2493 1.8899 -1.9288 33 1 2.7440 2.7259 -1.4438 34 1 2.5470 3.9148 1.3056 35 1 3.2997 3.9182 -0.3122 36 1 4.0831 5.6086 1.7530 37 1 5.1797 5.0903 0.4309 38 1 7.7671 6.1865 2.8092 39 1 6.0731 6.3963 2.3047 40 1 6.4473 5.7889 3.9355 41 1 7.4310 2.4891 2.8943 42 1 7.2172 3.6050 4.2644 43 1 9.6704 2.4966 4.3932 44 1 12.5312 1.4094 5.7250 45 1 6.0977 2.4483 0.8162 46 1 5.4767 1.7284 2.3331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189115851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:06 Heat of formation + Delta-G solvation = -94.106942 kcal Electronic energy + Delta-G solvation = -26567.302687 eV Core-core repulsion = 22685.908972 eV Total energy + Delta-G solvation = -3881.393715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54321 -39.00764 -38.09876 -37.29376 -35.50988 -33.82452 -32.30855 -31.25051 -30.73185 -28.93225 -27.86540 -27.17699 -25.20438 -24.80164 -23.33611 -22.68875 -20.30877 -19.71769 -19.07589 -17.85527 -17.72462 -17.10477 -16.63821 -15.84453 -15.71617 -15.56045 -15.18320 -14.67226 -14.56563 -14.30891 -14.07435 -13.86767 -13.69901 -13.41275 -13.29920 -13.04059 -12.98082 -12.62171 -12.49069 -12.14772 -12.09756 -11.82034 -11.53851 -11.50585 -11.39465 -11.27037 -11.04645 -10.96324 -10.77780 -10.37547 -10.32575 -10.20091 -9.70811 -9.46585 -8.82737 -8.49555 -7.98272 -7.88286 -6.39710 -3.80679 2.41627 2.45362 3.19059 3.27851 3.33598 3.53083 3.90200 3.93929 4.10081 4.23392 4.37904 4.46117 4.53576 4.60854 4.79327 4.90054 4.98299 5.00813 5.05022 5.16247 5.18608 5.27421 5.28509 5.30447 5.34862 5.57660 5.61669 5.71134 5.73091 5.77482 5.85667 5.87223 5.89909 6.03873 6.07611 6.28770 6.52635 6.67380 7.17123 7.27236 7.34396 7.57006 7.99288 8.07864 8.63339 9.19774 9.56174 10.07667 10.78021 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002538 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.844157 B =11029.596004 C =11832.482346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.075 3.925 4 H 0.084 0.916 5 C -0.173 4.173 6 C 0.529 3.471 7 O -0.516 6.516 8 N -0.617 5.617 9 C 0.097 3.903 10 C -0.122 4.122 11 C 0.068 3.932 12 H 0.055 0.945 13 N -0.506 5.506 14 C 0.023 3.977 15 C 0.042 3.958 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.113 3.887 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.085 0.915 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.097 2.923 -8.173 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.014 3.986 4 H 0.101 0.899 5 C -0.231 4.231 6 C 0.315 3.685 7 O -0.390 6.390 8 N -0.354 5.354 9 C -0.026 4.026 10 C -0.161 4.161 11 C -0.042 4.042 12 H 0.073 0.927 13 N -0.231 5.231 14 C -0.124 4.124 15 C -0.090 4.090 16 C 0.230 3.770 17 O -0.463 6.463 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.009 4.009 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.035 0.965 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.216 2.576 -8.847 24.978 hybrid contribution 0.104 -0.049 1.237 1.242 sum -23.112 2.527 -7.611 24.464 Atomic orbital electron populations 1.22886 0.80585 1.03331 0.99983 1.88068 1.19660 1.25135 1.94935 1.21862 0.93206 0.86717 0.96815 0.89854 1.22289 1.03351 1.02644 0.94811 1.20024 0.86197 0.82807 0.79424 1.90754 1.67683 1.28798 1.51741 1.48337 1.18663 1.05467 1.62913 1.22207 0.97693 0.81618 1.01102 1.22707 0.96405 0.97012 0.99931 1.22782 0.90082 0.93969 0.97324 0.92706 1.61636 1.07599 1.02599 1.51233 1.22555 1.04939 0.88691 0.96264 1.21956 0.94021 0.97528 0.95454 1.19660 0.86299 0.86238 0.84765 1.90474 1.81610 1.31279 1.42902 1.41869 1.06661 1.30488 1.41009 1.19687 0.81666 1.15380 1.26062 0.87897 1.25270 1.00565 0.95885 0.96278 1.69616 1.35186 1.20473 1.28972 0.85858 0.81727 0.77841 0.78856 1.20462 1.20931 1.19404 1.22295 0.83486 0.96889 0.98236 0.93805 0.89064 0.93856 0.90804 0.91198 0.90502 0.91416 0.90742 0.89971 0.88853 0.88276 0.92114 0.96521 0.89267 0.93294 0.77470 0.91860 0.89682 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.13 9.90 -54.99 -0.54 -4.68 16 3 C 0.08 0.72 2.53 -27.88 -0.07 0.65 16 4 H 0.08 0.57 7.62 -51.93 -0.40 0.17 16 5 C -0.17 -1.28 9.44 37.16 0.35 -0.93 16 6 C 0.53 7.05 7.18 -10.98 -0.08 6.97 16 7 O -0.52 -9.38 16.76 -14.20 -0.24 -9.62 16 8 N -0.62 -7.07 3.33 -170.52 -0.57 -7.64 16 9 C 0.10 0.75 6.13 -3.06 -0.02 0.73 16 10 C -0.12 -1.09 5.33 -24.89 -0.13 -1.22 16 11 C 0.07 0.82 2.71 -65.56 -0.18 0.65 16 12 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 13 N -0.51 -7.93 4.40 -233.74 -1.03 -8.96 16 14 C 0.02 0.35 9.09 60.07 0.55 0.89 16 15 C 0.04 0.74 5.33 -4.98 -0.03 0.71 16 16 C 0.45 10.40 7.54 -10.99 -0.08 10.32 16 17 O -0.58 -15.25 13.88 5.55 0.08 -15.17 16 18 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 23 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.11 1.50 5.37 -2.53 -0.01 1.48 16 28 H 0.04 0.22 7.99 -51.93 -0.42 -0.20 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.37 7.99 -51.93 -0.42 -0.04 16 33 H 0.08 0.48 5.55 -51.93 -0.29 0.19 16 34 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 35 H 0.07 0.45 5.90 -51.93 -0.31 0.14 16 36 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.85 6.00 -51.93 -0.31 1.54 16 39 H 0.06 0.73 6.77 -51.93 -0.35 0.38 16 40 H 0.02 0.23 8.07 -51.93 -0.42 -0.19 16 41 H 0.09 1.49 6.70 -51.93 -0.35 1.14 16 42 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.15 7.63 -51.93 -0.40 0.76 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -34.77 370.57 -7.19 -41.96 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.26 Total: 7.26 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 1.15 Total: 13.56 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.93 Total: -55.06 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.71 Total: -29.47 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.77 -7.19 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189115851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.144 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds