Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99527 * 2 1 4 4 H 1.08998 * 109.47508 * 29.99993 * 3 2 1 5 5 C 1.53004 * 109.47359 * 270.00163 * 3 2 1 6 6 C 1.50704 * 109.47043 * 150.00399 * 3 2 1 7 7 O 1.21286 * 119.99667 * 8.84195 * 6 3 2 8 8 N 1.34774 * 120.00121 * 188.85112 * 6 3 2 9 9 C 1.47024 * 125.64804 * 4.77386 * 8 6 3 10 10 C 1.54322 * 107.26752 * 178.89718 * 9 8 6 11 11 C 1.55161 * 102.94713 * 337.80931 * 10 9 8 12 12 H 1.08998 * 111.00382 * 277.39128 * 11 10 9 13 13 N 1.46903 * 111.00437 * 153.57432 * 11 10 9 14 14 C 1.46901 * 110.99661 * 61.88297 * 13 11 10 15 15 C 1.46895 * 110.99733 * 185.83733 * 13 11 10 16 16 C 1.50700 * 109.46970 * 170.00274 * 15 13 11 17 17 O 1.21292 * 120.00085 * 359.97438 * 16 15 13 18 18 N 1.34774 * 119.99899 * 180.02562 * 16 15 13 19 19 C 1.37104 * 120.00109 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99585 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00368 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99780 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00342 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47439 * 89.99866 * 23 21 19 25 25 H 1.48500 * 109.47502 * 210.00445 * 23 21 19 26 26 H 1.48509 * 109.47038 * 330.00320 * 23 21 19 27 27 C 1.47430 * 125.64708 * 184.73013 * 8 6 3 28 28 H 1.08997 * 109.47205 * 59.99888 * 1 2 3 29 29 H 1.09006 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47208 * 299.99652 * 1 2 3 31 31 H 1.09005 * 109.46532 * 305.17674 * 5 3 2 32 32 H 1.08994 * 109.47236 * 65.17820 * 5 3 2 33 33 H 1.09000 * 109.46864 * 185.18410 * 5 3 2 34 34 H 1.09001 * 109.87577 * 59.48909 * 9 8 6 35 35 H 1.08991 * 110.01302 * 298.39174 * 9 8 6 36 36 H 1.08999 * 110.71931 * 219.44667 * 10 9 8 37 37 H 1.08999 * 110.72200 * 96.17310 * 10 9 8 38 38 H 1.09001 * 109.46525 * 189.55867 * 14 13 11 39 39 H 1.09001 * 109.46925 * 309.55300 * 14 13 11 40 40 H 1.09000 * 109.47071 * 69.55747 * 14 13 11 41 41 H 1.08998 * 109.47470 * 49.99920 * 15 13 11 42 42 H 1.09004 * 109.47188 * 289.99885 * 15 13 11 43 43 H 0.97001 * 120.00454 * 359.97438 * 18 16 15 44 44 H 0.96996 * 119.99849 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.36977 * 85.33112 * 27 8 6 46 46 H 1.09005 * 110.36433 * 323.00669 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2175 1.7715 -1.4425 6 6 3.3386 1.2640 0.7103 7 8 3.8227 0.1986 1.0293 8 7 3.9887 2.4107 0.9913 9 6 3.4749 3.7674 0.7529 10 6 4.5471 4.7579 1.2540 11 6 5.3619 3.9068 2.2635 12 1 4.8729 3.8812 3.2372 13 7 6.7387 4.4052 2.3817 14 6 6.7578 5.7831 2.8907 15 6 7.5482 3.5197 3.2293 16 6 8.9983 3.9180 3.1312 17 8 9.3253 4.8479 2.4244 18 7 9.9319 3.2405 3.8282 19 6 11.2512 3.6025 3.7386 20 1 11.5422 4.4310 3.1098 21 6 12.2136 2.9043 4.4574 22 7 11.8594 1.8966 5.2229 23 14 14.0111 3.3981 4.3359 24 1 14.3192 4.4067 5.3814 25 1 14.8677 2.2015 4.5347 26 1 14.2753 3.9788 2.9948 27 6 5.3323 2.5122 1.5895 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.8072 1.0305 -1.9824 32 1 1.2493 1.8899 -1.9288 33 1 2.7440 2.7259 -1.4438 34 1 2.5470 3.9148 1.3056 35 1 3.2997 3.9182 -0.3122 36 1 4.0831 5.6086 1.7530 37 1 5.1797 5.0903 0.4309 38 1 7.7671 6.1865 2.8092 39 1 6.0731 6.3963 2.3047 40 1 6.4473 5.7889 3.9355 41 1 7.4310 2.4891 2.8943 42 1 7.2172 3.6050 4.2644 43 1 9.6704 2.4966 4.3932 44 1 12.5312 1.4094 5.7250 45 1 6.0977 2.4483 0.8162 46 1 5.4767 1.7284 2.3331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189115851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -121.115779 kcal Electronic energy + Delta-G solvation = -26568.473878 eV Core-core repulsion = 22685.908972 eV Total energy + Delta-G solvation = -3882.564906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48351 -40.41507 -39.32473 -38.32594 -36.78155 -35.79426 -33.29726 -33.09602 -31.61749 -29.87218 -29.31701 -27.70582 -26.74898 -25.98977 -24.53128 -23.49140 -21.43642 -20.93133 -20.47217 -19.84440 -18.60517 -17.99449 -17.83278 -17.18830 -16.68035 -16.53332 -16.43804 -16.15121 -15.97732 -15.62565 -15.36526 -15.03555 -14.79016 -14.63752 -14.30999 -14.01160 -13.85763 -13.69325 -13.48896 -13.32509 -13.27287 -13.07120 -12.78414 -12.75440 -12.58423 -12.43230 -12.32162 -12.14852 -12.12906 -11.86882 -11.75896 -11.45972 -11.07817 -10.57117 -10.29489 -10.00909 -9.75675 -9.25861 -8.46496 -5.95436 1.37552 1.40990 1.45968 1.54107 1.59810 2.04583 2.27826 2.69861 2.95403 3.19941 3.27853 3.40524 3.61101 3.67468 3.87534 3.98145 4.06528 4.15546 4.26399 4.29763 4.39011 4.45433 4.47600 4.52021 4.56077 4.60240 4.65205 4.71747 4.75610 4.82411 4.86940 4.89205 5.00419 5.11714 5.19775 5.23872 5.29833 5.41125 5.83790 6.03373 6.07393 6.19192 6.42995 6.59894 7.03700 7.12631 7.55938 8.11176 8.71135 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002538 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.844157 B =11029.596004 C =11832.482346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.080 3.920 4 H 0.120 0.880 5 C -0.168 4.168 6 C 0.518 3.482 7 O -0.581 6.581 8 N -0.612 5.612 9 C 0.094 3.906 10 C -0.115 4.115 11 C 0.072 3.928 12 H 0.068 0.932 13 N -0.523 5.523 14 C 0.028 3.972 15 C 0.054 3.946 16 C 0.444 3.556 17 O -0.610 6.610 18 N -0.577 5.577 19 C -0.330 4.330 20 H 0.081 0.919 21 C -0.017 4.017 22 N -0.923 5.923 23 Si 0.994 3.006 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.272 1.272 27 C 0.111 3.889 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.027 0.973 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.394 0.606 44 H 0.277 0.723 45 H 0.063 0.937 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.647 4.550 -8.633 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.019 3.981 4 H 0.138 0.862 5 C -0.225 4.225 6 C 0.307 3.693 7 O -0.460 6.460 8 N -0.348 5.348 9 C -0.027 4.027 10 C -0.152 4.152 11 C -0.037 4.037 12 H 0.086 0.914 13 N -0.248 5.248 14 C -0.119 4.119 15 C -0.077 4.077 16 C 0.231 3.769 17 O -0.496 6.496 18 N -0.214 5.214 19 C -0.459 4.459 20 H 0.099 0.901 21 C -0.216 4.216 22 N -0.565 5.565 23 Si 0.818 3.182 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.012 4.012 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.228 0.772 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.812 4.244 -9.313 27.767 hybrid contribution 0.828 -0.533 1.345 1.667 sum -24.985 3.710 -7.968 26.486 Atomic orbital electron populations 1.23107 0.78378 1.04194 1.01684 1.88024 1.22196 1.26573 1.95200 1.21992 0.91333 0.86961 0.97822 0.86244 1.22287 1.04711 1.02371 0.93144 1.20954 0.87423 0.82177 0.78729 1.90715 1.69555 1.31209 1.54519 1.48417 1.17704 1.06881 1.61754 1.22535 0.98244 0.78675 1.03293 1.22744 0.96064 0.97669 0.98771 1.22808 0.88341 0.93752 0.98768 0.91448 1.61556 1.09665 1.02681 1.50865 1.22451 1.03291 0.88482 0.97680 1.21773 0.90511 0.98282 0.97134 1.20652 0.88287 0.84944 0.82986 1.90453 1.82804 1.32476 1.43827 1.41969 1.06504 1.31056 1.41897 1.19670 0.83357 1.15819 1.27100 0.90057 1.26083 1.04430 0.95590 0.95482 1.69689 1.36604 1.20955 1.29207 0.84906 0.76630 0.77936 0.78736 1.19462 1.19756 1.19660 1.22131 0.84428 0.97311 0.97330 0.91528 0.88855 0.92571 0.93210 0.88402 0.89057 0.88103 0.88266 0.86963 0.89683 0.92491 0.88690 0.95438 0.88553 0.91481 0.77242 0.91372 0.91879 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.40 -8.77 9.90 -130.09 -1.29 -10.06 16 3 C 0.08 1.35 2.53 29.85 0.08 1.42 16 4 H 0.12 1.10 7.62 -2.39 -0.02 1.09 16 5 C -0.17 -2.00 9.44 71.98 0.68 -1.32 16 6 C 0.52 13.55 7.18 87.66 0.63 14.18 16 7 O -0.58 -22.12 16.76 15.84 0.27 -21.85 16 8 N -0.61 -13.11 3.33 -811.78 -2.70 -15.81 16 9 C 0.09 1.05 6.13 86.73 0.53 1.58 16 10 C -0.11 -1.60 5.33 31.78 0.17 -1.43 16 11 C 0.07 1.60 2.71 46.31 0.13 1.73 16 12 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 13 N -0.52 -15.96 4.40 -893.42 -3.93 -19.89 16 14 C 0.03 0.81 9.09 127.69 1.16 1.97 16 15 C 0.05 1.94 5.33 85.56 0.46 2.39 16 16 C 0.44 21.41 7.54 87.66 0.66 22.07 16 17 O -0.61 -33.31 13.88 -3.07 -0.04 -33.35 16 18 N -0.58 -30.38 5.29 -306.98 -1.62 -32.00 16 19 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 20 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 21 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 22 N -0.92 -51.26 13.05 21.66 0.28 -50.98 16 23 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.11 2.94 5.37 86.85 0.47 3.41 16 28 H 0.07 0.43 7.99 -2.39 -0.02 0.41 16 29 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.06 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.10 0.64 7.99 -2.39 -0.02 0.62 16 33 H 0.09 0.79 5.55 -2.39 -0.01 0.78 16 34 H 0.10 0.57 8.13 -2.39 -0.02 0.55 16 35 H 0.10 0.69 5.90 -2.39 -0.01 0.68 16 36 H 0.11 0.97 7.89 -2.39 -0.02 0.95 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 2.14 6.00 -2.39 -0.01 2.13 16 39 H 0.09 2.01 6.77 -2.39 -0.02 1.99 16 40 H 0.03 0.71 8.07 -2.39 -0.02 0.69 16 41 H 0.10 3.30 6.70 -2.39 -0.02 3.29 16 42 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 43 H 0.39 20.02 7.90 -92.71 -0.73 19.29 16 44 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.06 1.78 7.63 -2.38 -0.02 1.76 16 Total: -1.00 -80.96 370.57 0.71 -80.25 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.26 Total: 29.10 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: 7.46 Total: 28.84 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -7.97 Total: -118.68 kcal Atomic # 8 Polarization: -64.20 SS G_CDS: -1.06 Total: -65.27 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -80.96 0.71 -80.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189115851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.869 kcal (2) G-P(sol) polarization free energy of solvation -80.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds