Wall clock time and date at job start Fri Apr 10 2020 18:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99821 * 2 1 4 4 H 1.09003 * 109.47057 * 329.99823 * 3 2 1 5 5 C 1.53000 * 109.47453 * 89.99765 * 3 2 1 6 6 C 1.50703 * 109.47003 * 209.99757 * 3 2 1 7 7 O 1.21280 * 119.99765 * 352.69998 * 6 3 2 8 8 N 1.34781 * 120.00055 * 172.69938 * 6 3 2 9 9 C 1.47017 * 125.64524 * 175.03612 * 8 6 3 10 10 C 1.54331 * 107.26669 * 178.97864 * 9 8 6 11 11 C 1.55161 * 102.94326 * 337.80461 * 10 9 8 12 12 H 1.08994 * 111.00676 * 277.43243 * 11 10 9 13 13 N 1.46894 * 111.00371 * 153.57393 * 11 10 9 14 14 C 1.46898 * 111.00082 * 185.40751 * 13 11 10 15 15 C 1.46906 * 110.99673 * 61.45922 * 13 11 10 16 16 C 1.50704 * 109.47213 * 190.00126 * 15 13 11 17 17 O 1.21299 * 119.99802 * 359.97438 * 16 15 13 18 18 N 1.34774 * 120.00092 * 179.97438 * 16 15 13 19 19 C 1.37105 * 119.99704 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00097 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99574 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00131 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99679 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47149 * 89.99828 * 23 21 19 25 25 H 1.48502 * 109.46843 * 209.99533 * 23 21 19 26 26 H 1.48497 * 109.47209 * 329.99595 * 23 21 19 27 27 C 1.47422 * 125.64494 * 355.07961 * 8 6 3 28 28 H 1.09003 * 109.47202 * 60.00660 * 1 2 3 29 29 H 1.09010 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47385 * 299.99905 * 1 2 3 31 31 H 1.08998 * 109.47321 * 65.18206 * 5 3 2 32 32 H 1.08995 * 109.47283 * 185.18706 * 5 3 2 33 33 H 1.09004 * 109.46832 * 305.18188 * 5 3 2 34 34 H 1.08994 * 109.88381 * 59.56087 * 9 8 6 35 35 H 1.08999 * 110.00947 * 298.46472 * 9 8 6 36 36 H 1.09002 * 110.71896 * 96.17258 * 10 9 8 37 37 H 1.08995 * 110.71624 * 219.44452 * 10 9 8 38 38 H 1.08996 * 109.46782 * 60.00743 * 14 13 11 39 39 H 1.09004 * 109.46963 * 179.97438 * 14 13 11 40 40 H 1.08991 * 109.47311 * 300.00240 * 14 13 11 41 41 H 1.09005 * 109.46869 * 309.99238 * 15 13 11 42 42 H 1.08996 * 109.47435 * 69.99537 * 15 13 11 43 43 H 0.96996 * 119.99911 * 359.97438 * 18 16 15 44 44 H 0.96999 * 120.00349 * 180.02562 * 22 21 19 45 45 H 1.08993 * 110.36988 * 322.92858 * 27 8 6 46 46 H 1.08998 * 110.36823 * 85.14758 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.8094 0.2004 -1.0542 8 7 4.0036 2.4086 -0.9636 9 6 5.3472 2.5067 -1.5523 10 6 5.6841 4.0076 -1.6772 11 6 4.2852 4.6790 -1.6764 12 1 3.8395 4.6544 -2.6707 13 7 4.3624 6.0558 -1.1701 14 6 3.0234 6.6477 -1.0485 15 6 5.2279 6.8823 -2.0221 16 6 5.4810 8.2058 -1.3473 17 8 4.9885 8.4379 -0.2634 18 7 6.2547 9.1314 -1.9481 19 6 6.4846 10.3357 -1.3343 20 1 6.0460 10.5423 -0.3693 21 6 7.2818 11.2903 -1.9540 22 7 7.8158 11.0386 -3.1280 23 14 7.5956 12.9308 -1.1175 24 1 8.8091 12.8290 -0.2678 25 1 7.7992 13.9807 -2.1477 26 1 6.4278 13.2867 -0.2721 27 6 3.5044 3.7695 -0.6952 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.9535 1.1313 1.9289 32 1 2.5744 2.8014 1.4438 33 1 1.2724 1.7137 1.9824 34 1 5.3548 2.0417 -2.5380 35 1 6.0745 2.0161 -0.9055 36 1 6.2733 4.3429 -0.8237 37 1 6.2078 4.2087 -2.6117 38 1 2.4253 6.0542 -0.3571 39 1 3.1096 7.6668 -0.6712 40 1 2.5420 6.6614 -2.0262 41 1 6.1761 6.3692 -2.1829 42 1 4.7389 7.0512 -2.9815 43 1 6.6489 8.9457 -2.8147 44 1 8.3726 11.7048 -3.5605 45 1 2.4343 3.8272 -0.8944 46 1 3.7134 4.0538 0.3361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189115852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:09 Heat of formation + Delta-G solvation = -96.453805 kcal Electronic energy + Delta-G solvation = -26605.177302 eV Core-core repulsion = 22723.681820 eV Total energy + Delta-G solvation = -3881.495482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56853 -39.04505 -38.14013 -37.34256 -35.45006 -33.86997 -32.53601 -31.29599 -30.48907 -29.20503 -27.57130 -27.16295 -25.57629 -24.65184 -23.69366 -22.27742 -20.45974 -19.70564 -19.11298 -17.89147 -17.76977 -17.06368 -16.50332 -16.26067 -15.89906 -15.40989 -15.04017 -14.74736 -14.49951 -14.22746 -14.08241 -13.87682 -13.66486 -13.62584 -13.30077 -13.02863 -12.99640 -12.60665 -12.52574 -12.23411 -12.09909 -11.89185 -11.55641 -11.52421 -11.47177 -11.19309 -11.03824 -10.99378 -10.86232 -10.42513 -10.32440 -10.25438 -9.74537 -9.51512 -8.87075 -8.53838 -8.04792 -7.95533 -6.45482 -3.86413 2.37722 2.44135 3.15055 3.24177 3.29267 3.49678 3.84895 3.86466 4.15480 4.24157 4.26750 4.49897 4.59711 4.64512 4.90153 4.93541 5.00250 5.02056 5.04891 5.11813 5.21679 5.24149 5.32164 5.33719 5.35375 5.53310 5.59561 5.62195 5.71610 5.73973 5.79647 5.83238 5.90777 6.00884 6.06942 6.22577 6.44160 6.67698 7.10056 7.23611 7.27344 7.51654 7.94593 8.02199 8.57316 9.14216 9.50116 10.01479 10.72136 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.002383 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.719414 B =11746.931900 C =12223.438151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.074 3.926 4 H 0.085 0.915 5 C -0.172 4.172 6 C 0.531 3.469 7 O -0.522 6.522 8 N -0.616 5.616 9 C 0.112 3.888 10 C -0.128 4.128 11 C 0.069 3.931 12 H 0.057 0.943 13 N -0.507 5.507 14 C 0.019 3.981 15 C 0.045 3.955 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.106 3.894 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.016 0.984 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.073 0.927 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.339 -16.300 1.922 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.013 3.987 4 H 0.102 0.898 5 C -0.230 4.230 6 C 0.318 3.682 7 O -0.396 6.396 8 N -0.353 5.353 9 C -0.010 4.010 10 C -0.166 4.166 11 C -0.041 4.041 12 H 0.074 0.926 13 N -0.231 5.231 14 C -0.128 4.128 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.017 4.017 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.034 0.966 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.025 -16.870 2.832 20.351 hybrid contribution -0.113 1.082 -1.084 1.536 sum -11.138 -15.788 1.748 19.400 Atomic orbital electron populations 1.22893 0.80525 1.03276 1.00129 1.88039 1.19716 1.25209 1.94967 1.21884 0.93198 0.86679 0.96973 0.89772 1.22247 1.03622 1.02538 0.94546 1.20009 0.86172 0.82659 0.79326 1.90722 1.68520 1.28955 1.51453 1.48360 1.18290 1.05677 1.62924 1.21943 0.83316 0.97004 0.98780 1.22791 0.96995 0.92588 1.04187 1.22776 0.95945 0.89314 0.96049 0.92557 1.61622 1.12527 0.99532 1.49403 1.22584 0.88017 1.03219 0.99025 1.21882 0.97991 0.94511 0.94221 1.19683 0.84355 0.85497 0.87576 1.90487 1.53861 1.79893 1.21978 1.41867 1.43765 1.14068 1.20283 1.19688 1.28303 0.90588 1.04268 0.87889 1.25265 0.96678 1.00038 0.95961 1.69604 1.33414 1.36271 1.14952 0.85860 0.78951 0.80890 0.78608 1.20377 1.20956 1.19429 1.22419 0.98049 0.80519 1.00696 0.93824 0.89086 0.93698 0.91105 0.90376 0.91031 0.91277 0.91025 0.88832 0.89700 0.92133 0.88223 0.96574 0.89139 0.93357 0.77496 0.91845 0.90846 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.36 -4.14 9.89 -55.04 -0.54 -4.69 16 3 C 0.07 0.74 2.51 -27.88 -0.07 0.67 16 4 H 0.08 0.65 7.08 -51.93 -0.37 0.28 16 5 C -0.17 -1.41 9.38 37.16 0.35 -1.06 16 6 C 0.53 6.86 7.19 -10.98 -0.08 6.78 16 7 O -0.52 -8.88 16.85 -14.25 -0.24 -9.12 16 8 N -0.62 -6.89 3.33 -170.52 -0.57 -7.45 16 9 C 0.11 1.19 6.87 -3.06 -0.02 1.17 16 10 C -0.13 -1.32 5.31 -24.89 -0.13 -1.45 16 11 C 0.07 0.77 2.71 -65.56 -0.18 0.59 16 12 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 13 N -0.51 -7.35 4.40 -233.74 -1.03 -8.38 16 14 C 0.02 0.27 9.01 60.06 0.54 0.81 16 15 C 0.05 0.73 5.32 -4.97 -0.03 0.71 16 16 C 0.44 9.83 7.48 -10.98 -0.08 9.74 16 17 O -0.58 -14.65 13.91 5.54 0.08 -14.57 16 18 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 19 C -0.30 -8.06 9.68 -14.93 -0.14 -8.20 16 20 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -23.93 13.05 55.50 0.72 -23.20 16 23 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C 0.11 1.05 4.12 -2.53 -0.01 1.04 16 28 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 29 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.04 0.24 7.78 -51.93 -0.40 -0.16 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.58 6.11 -51.93 -0.32 0.27 16 33 H 0.07 0.47 7.78 -51.93 -0.40 0.07 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 38 H 0.06 0.70 7.15 -51.93 -0.37 0.33 16 39 H 0.10 1.78 5.82 -51.93 -0.30 1.48 16 40 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 1.32 6.73 -51.93 -0.35 0.97 16 42 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.39 9.11 7.90 -40.82 -0.32 8.78 16 44 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.07 0.60 7.16 -51.93 -0.37 0.22 16 46 H 0.09 0.90 7.21 -51.93 -0.37 0.53 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -33.25 370.77 -7.23 -40.48 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.31 Total: 6.94 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 1.14 Total: 12.58 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.93 Total: -52.75 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.71 Total: -28.38 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.25 -7.23 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189115852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.970 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds