Wall clock time and date at job start Fri Apr 10 2020 18:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99821 * 2 1 4 4 H 1.09003 * 109.47057 * 329.99823 * 3 2 1 5 5 C 1.53000 * 109.47453 * 89.99765 * 3 2 1 6 6 C 1.50703 * 109.47003 * 209.99757 * 3 2 1 7 7 O 1.21280 * 119.99765 * 352.69998 * 6 3 2 8 8 N 1.34781 * 120.00055 * 172.69938 * 6 3 2 9 9 C 1.47017 * 125.64524 * 175.03612 * 8 6 3 10 10 C 1.54331 * 107.26669 * 178.97864 * 9 8 6 11 11 C 1.55161 * 102.94326 * 337.80461 * 10 9 8 12 12 H 1.08994 * 111.00676 * 277.43243 * 11 10 9 13 13 N 1.46894 * 111.00371 * 153.57393 * 11 10 9 14 14 C 1.46898 * 111.00082 * 185.40751 * 13 11 10 15 15 C 1.46906 * 110.99673 * 61.45922 * 13 11 10 16 16 C 1.50704 * 109.47213 * 190.00126 * 15 13 11 17 17 O 1.21299 * 119.99802 * 359.97438 * 16 15 13 18 18 N 1.34774 * 120.00092 * 179.97438 * 16 15 13 19 19 C 1.37105 * 119.99704 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00097 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99574 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00131 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99679 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47149 * 89.99828 * 23 21 19 25 25 H 1.48502 * 109.46843 * 209.99533 * 23 21 19 26 26 H 1.48497 * 109.47209 * 329.99595 * 23 21 19 27 27 C 1.47422 * 125.64494 * 355.07961 * 8 6 3 28 28 H 1.09003 * 109.47202 * 60.00660 * 1 2 3 29 29 H 1.09010 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47385 * 299.99905 * 1 2 3 31 31 H 1.08998 * 109.47321 * 65.18206 * 5 3 2 32 32 H 1.08995 * 109.47283 * 185.18706 * 5 3 2 33 33 H 1.09004 * 109.46832 * 305.18188 * 5 3 2 34 34 H 1.08994 * 109.88381 * 59.56087 * 9 8 6 35 35 H 1.08999 * 110.00947 * 298.46472 * 9 8 6 36 36 H 1.09002 * 110.71896 * 96.17258 * 10 9 8 37 37 H 1.08995 * 110.71624 * 219.44452 * 10 9 8 38 38 H 1.08996 * 109.46782 * 60.00743 * 14 13 11 39 39 H 1.09004 * 109.46963 * 179.97438 * 14 13 11 40 40 H 1.08991 * 109.47311 * 300.00240 * 14 13 11 41 41 H 1.09005 * 109.46869 * 309.99238 * 15 13 11 42 42 H 1.08996 * 109.47435 * 69.99537 * 15 13 11 43 43 H 0.96996 * 119.99911 * 359.97438 * 18 16 15 44 44 H 0.96999 * 120.00349 * 180.02562 * 22 21 19 45 45 H 1.08993 * 110.36988 * 322.92858 * 27 8 6 46 46 H 1.08998 * 110.36823 * 85.14758 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.8094 0.2004 -1.0542 8 7 4.0036 2.4086 -0.9636 9 6 5.3472 2.5067 -1.5523 10 6 5.6841 4.0076 -1.6772 11 6 4.2852 4.6790 -1.6764 12 1 3.8395 4.6544 -2.6707 13 7 4.3624 6.0558 -1.1701 14 6 3.0234 6.6477 -1.0485 15 6 5.2279 6.8823 -2.0221 16 6 5.4810 8.2058 -1.3473 17 8 4.9885 8.4379 -0.2634 18 7 6.2547 9.1314 -1.9481 19 6 6.4846 10.3357 -1.3343 20 1 6.0460 10.5423 -0.3693 21 6 7.2818 11.2903 -1.9540 22 7 7.8158 11.0386 -3.1280 23 14 7.5956 12.9308 -1.1175 24 1 8.8091 12.8290 -0.2678 25 1 7.7992 13.9807 -2.1477 26 1 6.4278 13.2867 -0.2721 27 6 3.5044 3.7695 -0.6952 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.9535 1.1313 1.9289 32 1 2.5744 2.8014 1.4438 33 1 1.2724 1.7137 1.9824 34 1 5.3548 2.0417 -2.5380 35 1 6.0745 2.0161 -0.9055 36 1 6.2733 4.3429 -0.8237 37 1 6.2078 4.2087 -2.6117 38 1 2.4253 6.0542 -0.3571 39 1 3.1096 7.6668 -0.6712 40 1 2.5420 6.6614 -2.0262 41 1 6.1761 6.3692 -2.1829 42 1 4.7389 7.0512 -2.9815 43 1 6.6489 8.9457 -2.8147 44 1 8.3726 11.7048 -3.5605 45 1 2.4343 3.8272 -0.8944 46 1 3.7134 4.0538 0.3361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189115852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:08 Heat of formation + Delta-G solvation = -121.307265 kcal Electronic energy + Delta-G solvation = -26606.255029 eV Core-core repulsion = 22723.681820 eV Total energy + Delta-G solvation = -3882.573209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48934 -40.38101 -39.31065 -38.35654 -36.67957 -35.73054 -33.34287 -33.23821 -31.32118 -30.31544 -28.73507 -27.72998 -26.99881 -25.82945 -24.86934 -23.12031 -21.56418 -20.85600 -20.45161 -19.78948 -18.61031 -17.95989 -17.77235 -17.23181 -16.91249 -16.55006 -16.35976 -16.06125 -15.93081 -15.39471 -15.22159 -15.07957 -14.83337 -14.71471 -14.20694 -14.07158 -13.84563 -13.69402 -13.42697 -13.38649 -13.25703 -13.03099 -12.89244 -12.76685 -12.58081 -12.38912 -12.20826 -12.16142 -12.11245 -11.85252 -11.83047 -11.41591 -11.10439 -10.59447 -10.23449 -9.95892 -9.78399 -9.21499 -8.43338 -5.91185 1.39880 1.43511 1.43880 1.55628 1.60884 2.10700 2.30131 2.64727 2.96543 3.24108 3.34963 3.40268 3.49767 3.76836 3.83251 3.95535 4.08791 4.18241 4.25833 4.34909 4.44605 4.45265 4.53591 4.53821 4.57485 4.62370 4.64704 4.73296 4.76947 4.78432 4.85179 4.90805 4.92391 5.12335 5.17132 5.20536 5.28704 5.44817 5.87433 6.03830 6.08314 6.22223 6.36811 6.64799 7.00985 7.17359 7.61815 8.17494 8.73986 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.002383 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.719414 B =11746.931900 C =12223.438151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.075 3.925 4 H 0.112 0.888 5 C -0.166 4.166 6 C 0.524 3.476 7 O -0.573 6.573 8 N -0.612 5.612 9 C 0.111 3.889 10 C -0.121 4.121 11 C 0.071 3.929 12 H 0.071 0.929 13 N -0.521 5.521 14 C 0.022 3.978 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.612 6.612 18 N -0.577 5.577 19 C -0.328 4.328 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.272 1.272 27 C 0.109 3.891 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.032 0.968 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.395 0.605 44 H 0.276 0.724 45 H 0.100 0.900 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 -16.349 1.656 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.014 3.986 4 H 0.130 0.870 5 C -0.224 4.224 6 C 0.313 3.687 7 O -0.452 6.452 8 N -0.347 5.347 9 C -0.012 4.012 10 C -0.159 4.159 11 C -0.038 4.038 12 H 0.089 0.911 13 N -0.246 5.246 14 C -0.125 4.125 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.498 6.498 18 N -0.214 5.214 19 C -0.458 4.458 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.014 4.014 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.129 0.871 42 H 0.086 0.914 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.184 -16.909 2.559 20.998 hybrid contribution 0.194 1.033 -0.973 1.433 sum -11.990 -15.876 1.586 19.958 Atomic orbital electron populations 1.23113 0.78484 1.04296 1.01533 1.88000 1.22058 1.26268 1.95189 1.21993 0.91916 0.86938 0.97705 0.87006 1.22228 1.04224 1.02457 0.93491 1.20677 0.87089 0.82146 0.78744 1.90690 1.70008 1.30768 1.53751 1.48409 1.18247 1.05946 1.62071 1.21962 0.83281 0.97220 0.98740 1.22750 0.96697 0.91976 1.04498 1.22802 0.96711 0.87341 0.96909 0.91150 1.61544 1.12601 1.00711 1.49724 1.22495 0.88335 1.01301 1.00406 1.21731 0.99783 0.91496 0.94328 1.20754 0.82274 0.86859 0.87027 1.90471 1.54608 1.80998 1.23710 1.41946 1.44837 1.14047 1.20598 1.19630 1.29567 0.92469 1.04092 0.90242 1.25995 0.96076 1.02816 0.96517 1.69664 1.33639 1.37304 1.15656 0.84966 0.78610 0.77183 0.77835 1.19837 1.19805 1.19706 1.22485 0.99330 0.79223 1.00315 0.92734 0.88451 0.91866 0.92885 0.89458 0.89042 0.91184 0.91540 0.89935 0.88244 0.89421 0.92477 0.94960 0.87150 0.91405 0.77091 0.91445 0.88228 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.40 -8.59 9.89 -130.04 -1.29 -9.88 16 3 C 0.08 1.35 2.51 29.85 0.08 1.43 16 4 H 0.11 1.33 7.08 -2.39 -0.02 1.31 16 5 C -0.17 -2.38 9.38 71.98 0.68 -1.70 16 6 C 0.52 13.01 7.19 87.66 0.63 13.64 16 7 O -0.57 -19.70 16.85 15.91 0.27 -19.43 16 8 N -0.61 -12.57 3.33 -811.80 -2.70 -15.27 16 9 C 0.11 2.21 6.87 86.73 0.60 2.81 16 10 C -0.12 -2.25 5.31 31.79 0.17 -2.08 16 11 C 0.07 1.38 2.71 46.31 0.13 1.50 16 12 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 13 N -0.52 -13.95 4.40 -893.43 -3.93 -17.87 16 14 C 0.02 0.58 9.01 127.69 1.15 1.73 16 15 C 0.06 1.76 5.32 85.56 0.46 2.22 16 16 C 0.44 19.65 7.48 87.66 0.66 20.30 16 17 O -0.61 -31.53 13.91 -3.09 -0.04 -31.57 16 18 N -0.58 -28.25 5.29 -306.98 -1.62 -29.87 16 19 C -0.33 -18.01 9.68 84.04 0.81 -17.20 16 20 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 23 Si 0.99 42.07 29.55 68.60 2.03 44.10 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 C 0.11 1.81 4.12 86.86 0.36 2.17 16 28 H 0.05 0.52 8.09 -2.39 -0.02 0.50 16 29 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 0.51 7.78 -2.39 -0.02 0.49 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.07 6.11 -2.39 -0.01 1.05 16 33 H 0.09 0.94 7.78 -2.39 -0.02 0.92 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 1.57 7.88 -2.39 -0.02 1.55 16 38 H 0.09 1.75 7.15 -2.39 -0.02 1.74 16 39 H 0.06 2.01 5.82 -2.38 -0.01 2.00 16 40 H 0.03 0.72 8.14 -2.39 -0.02 0.71 16 41 H 0.11 2.96 6.73 -2.38 -0.02 2.94 16 42 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 43 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 44 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 45 H 0.10 1.18 7.16 -2.39 -0.02 1.16 16 46 H 0.09 1.53 7.21 -2.39 -0.02 1.52 16 Total: -1.00 -74.06 370.77 0.65 -73.41 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.25 Total: 28.80 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 7.40 Total: 26.02 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -7.97 Total: -111.44 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -1.06 Total: -60.88 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -74.06 0.65 -73.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189115852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.899 kcal (2) G-P(sol) polarization free energy of solvation -74.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds