Wall clock time and date at job start Fri Apr 10 2020 18:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99764 * 2 1 4 4 H 1.09000 * 109.47528 * 330.00631 * 3 2 1 5 5 C 1.53004 * 109.46998 * 90.00273 * 3 2 1 6 6 C 1.50700 * 109.47347 * 210.00160 * 3 2 1 7 7 O 1.21276 * 119.99976 * 348.73737 * 6 3 2 8 8 N 1.34781 * 119.99967 * 168.74168 * 6 3 2 9 9 C 1.47015 * 125.64842 * 5.10891 * 8 6 3 10 10 C 1.54328 * 107.27157 * 181.01360 * 9 8 6 11 11 C 1.55158 * 102.93963 * 22.18585 * 10 9 8 12 12 H 1.08998 * 111.00403 * 82.61734 * 11 10 9 13 13 N 1.46907 * 111.00263 * 206.42403 * 11 10 9 14 14 C 1.46900 * 110.99886 * 307.43632 * 13 11 10 15 15 C 1.46897 * 110.99586 * 183.47645 * 13 11 10 16 16 C 1.50701 * 109.46934 * 190.00142 * 15 13 11 17 17 O 1.21301 * 119.99796 * 0.02562 * 16 15 13 18 18 N 1.34773 * 120.00448 * 180.02562 * 16 15 13 19 19 C 1.37093 * 120.00184 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00420 * 0.28320 * 19 18 16 21 21 C 1.38959 * 119.99965 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00064 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99927 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47505 * 89.99508 * 23 21 19 25 25 H 1.48504 * 109.47115 * 209.99621 * 23 21 19 26 26 H 1.48502 * 109.47311 * 329.99518 * 23 21 19 27 27 C 1.47425 * 125.64379 * 185.04711 * 8 6 3 28 28 H 1.09004 * 109.47129 * 299.99719 * 1 2 3 29 29 H 1.09000 * 109.46976 * 60.00249 * 1 2 3 30 30 H 1.09000 * 109.46660 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46622 * 306.71953 * 5 3 2 32 32 H 1.09001 * 109.47374 * 66.71974 * 5 3 2 33 33 H 1.09004 * 109.46890 * 186.72270 * 5 3 2 34 34 H 1.08993 * 109.88760 * 61.59298 * 9 8 6 35 35 H 1.09007 * 110.00935 * 300.49424 * 9 8 6 36 36 H 1.09000 * 110.71699 * 263.82879 * 10 9 8 37 37 H 1.08996 * 110.87774 * 140.62389 * 10 9 8 38 38 H 1.09000 * 109.46722 * 291.12058 * 14 13 11 39 39 H 1.08993 * 109.47543 * 51.12329 * 14 13 11 40 40 H 1.08997 * 109.46654 * 171.12605 * 14 13 11 41 41 H 1.09000 * 109.47142 * 70.00492 * 15 13 11 42 42 H 1.08999 * 109.47602 * 309.99970 * 15 13 11 43 43 H 0.97004 * 119.99361 * 0.02562 * 18 16 15 44 44 H 0.97003 * 119.99932 * 180.02562 * 22 21 19 45 45 H 1.08995 * 110.36747 * 37.08501 * 27 8 6 46 46 H 1.09003 * 110.36998 * 274.75554 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.8435 0.1975 -0.9903 8 7 3.9655 2.4123 -1.0346 9 6 3.5226 3.7643 -0.6645 10 6 4.5324 4.7600 -1.2733 11 6 5.1722 3.9439 -2.4274 12 1 4.5462 3.9715 -3.3193 13 7 6.5280 4.4255 -2.7242 14 6 6.5326 5.8763 -2.9549 15 6 7.1022 3.7082 -3.8704 16 6 8.5655 4.0470 -3.9931 17 8 9.0796 4.8106 -3.2031 18 7 9.3030 3.5017 -4.9806 19 6 10.6341 3.8104 -5.0925 20 1 11.0928 4.4870 -4.3867 21 6 11.3946 3.2477 -6.1103 22 7 12.6706 3.5432 -6.2173 23 14 10.6031 2.0713 -7.3265 24 1 10.0737 2.8373 -8.4833 25 1 11.6161 1.0947 -7.8013 26 1 9.4904 1.3467 -6.6617 27 6 5.2097 2.5201 -1.8181 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.2787 1.6877 1.9899 32 1 2.9736 1.1482 1.9205 33 1 2.5484 2.8100 1.4449 34 1 3.5099 3.8662 0.4206 35 1 2.5272 3.9538 -1.0662 36 1 5.2854 5.0436 -0.5380 37 1 4.0227 5.6420 -1.6611 38 1 6.0161 6.0972 -3.8890 39 1 6.0238 6.3768 -2.1312 40 1 7.5614 6.2311 -3.0159 41 1 6.5830 4.0047 -4.7817 42 1 6.9893 2.6344 -3.7208 43 1 8.8918 2.8914 -5.6125 44 1 13.2014 3.1507 -6.9281 45 1 5.2266 1.7697 -2.6084 46 1 6.0779 2.4082 -1.1687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189115853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:12 Heat of formation + Delta-G solvation = -86.651343 kcal Electronic energy + Delta-G solvation = -26604.042135 eV Core-core repulsion = 22722.971719 eV Total energy + Delta-G solvation = -3881.070416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59852 -39.11921 -38.23301 -37.38607 -35.60483 -33.88864 -32.35370 -31.67448 -30.82915 -28.98985 -28.06488 -27.22554 -25.26527 -24.81796 -23.29975 -22.70199 -20.31401 -19.75506 -19.32389 -18.27903 -17.79113 -17.10223 -16.74501 -15.89669 -15.76178 -15.64522 -15.20231 -14.95758 -14.55590 -14.40814 -14.17458 -13.99323 -13.69661 -13.36997 -13.18078 -13.10106 -13.04778 -12.68517 -12.53399 -12.40777 -12.16596 -12.08909 -11.80771 -11.60692 -11.45667 -11.40257 -11.13776 -11.08398 -10.85645 -10.57798 -10.36902 -9.96646 -9.76457 -9.53295 -8.87941 -8.62109 -8.18237 -8.02171 -6.30258 -3.81552 2.36196 2.40042 3.05018 3.08217 3.16840 3.47988 3.73583 3.84707 4.04067 4.11603 4.31228 4.40924 4.47225 4.55563 4.69977 4.80949 4.85859 4.94287 4.94570 5.07801 5.11632 5.22384 5.23589 5.26790 5.29746 5.43875 5.53275 5.60912 5.67206 5.68818 5.76311 5.78549 5.81189 5.90450 5.97924 6.00378 6.46074 6.62977 7.06038 7.18899 7.26709 7.58965 7.94041 8.15195 8.60825 8.96030 9.43303 9.83824 10.82757 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.002709 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.482419 B =10332.439030 C =11271.838886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.075 3.925 4 H 0.084 0.916 5 C -0.174 4.174 6 C 0.529 3.471 7 O -0.515 6.515 8 N -0.617 5.617 9 C 0.098 3.902 10 C -0.125 4.125 11 C 0.068 3.932 12 H 0.056 0.944 13 N -0.507 5.507 14 C 0.021 3.979 15 C 0.040 3.960 16 C 0.454 3.546 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.878 3.122 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.116 3.884 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.077 0.923 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.301 0.080 10.431 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.014 3.986 4 H 0.102 0.898 5 C -0.231 4.231 6 C 0.316 3.684 7 O -0.389 6.389 8 N -0.354 5.354 9 C -0.026 4.026 10 C -0.163 4.163 11 C -0.042 4.042 12 H 0.074 0.926 13 N -0.231 5.231 14 C -0.127 4.127 15 C -0.091 4.091 16 C 0.239 3.761 17 O -0.441 6.441 18 N -0.230 5.230 19 C -0.432 4.432 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.007 4.007 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.100 -0.365 11.135 28.378 hybrid contribution -1.229 -0.572 -1.840 2.285 sum -27.329 -0.937 9.296 28.882 Atomic orbital electron populations 1.22894 0.80548 1.03351 1.00012 1.88063 1.19681 1.25139 1.94935 1.21864 0.93186 0.86728 0.96837 0.89835 1.22292 1.03703 1.02313 0.94809 1.20017 0.86179 0.82789 0.79421 1.90751 1.66392 1.28729 1.53076 1.48336 1.26621 1.05661 1.54795 1.22200 0.98393 0.81683 1.00292 1.22748 0.98140 0.97152 0.98222 1.22791 0.90235 0.94222 0.96917 0.92575 1.61582 1.17230 1.05231 1.39065 1.22594 1.04848 0.86663 0.98558 1.21976 0.95394 0.99593 0.92169 1.19563 0.87317 0.85442 0.83731 1.90522 1.72618 1.37977 1.43008 1.42212 1.10518 1.42676 1.27598 1.19418 0.82512 1.27108 1.14207 0.86240 1.25038 0.95425 0.97954 0.97739 1.69620 1.05806 1.43712 1.32974 0.86687 0.79545 0.81388 0.81891 1.19686 1.20149 1.19407 1.22257 0.86553 0.96458 0.95418 0.93771 0.93845 0.89037 0.91045 0.90975 0.90557 0.90696 0.91379 0.88829 0.89836 0.96463 0.91786 0.88224 0.93154 0.89210 0.79716 0.91619 0.90432 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.36 -3.98 9.91 -54.88 -0.54 -4.53 16 3 C 0.08 0.69 2.54 -27.88 -0.07 0.62 16 4 H 0.08 0.54 7.55 -51.93 -0.39 0.14 16 5 C -0.17 -1.19 9.36 37.16 0.35 -0.84 16 6 C 0.53 6.77 7.18 -10.98 -0.08 6.69 16 7 O -0.52 -9.11 16.84 -14.09 -0.24 -9.35 16 8 N -0.62 -6.71 3.33 -170.52 -0.57 -7.28 16 9 C 0.10 0.69 6.01 -3.07 -0.02 0.67 16 10 C -0.12 -1.02 4.94 -24.89 -0.12 -1.14 16 11 C 0.07 0.76 2.72 -65.56 -0.18 0.59 16 12 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 13 N -0.51 -7.52 4.40 -233.75 -1.03 -8.55 16 14 C 0.02 0.29 9.00 60.06 0.54 0.84 16 15 C 0.04 0.66 5.36 -4.98 -0.03 0.63 16 16 C 0.45 10.15 7.54 -10.99 -0.08 10.06 16 17 O -0.56 -14.55 13.88 5.54 0.08 -14.47 16 18 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 19 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 22 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 23 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 27 C 0.12 1.45 5.74 -2.53 -0.01 1.43 16 28 H 0.04 0.20 7.76 -51.93 -0.40 -0.20 16 29 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.37 7.76 -51.92 -0.40 -0.03 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.39 5.58 -51.93 -0.29 0.10 16 34 H 0.07 0.42 6.08 -51.93 -0.32 0.11 16 35 H 0.07 0.35 7.98 -51.93 -0.41 -0.07 16 36 H 0.09 0.85 7.99 -51.93 -0.42 0.44 16 37 H 0.08 0.53 7.95 -51.93 -0.41 0.12 16 38 H 0.02 0.22 8.08 -51.93 -0.42 -0.20 16 39 H 0.06 0.73 6.40 -51.93 -0.33 0.39 16 40 H 0.10 1.80 5.98 -51.93 -0.31 1.49 16 41 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 42 H 0.09 1.36 7.13 -51.93 -0.37 0.99 16 43 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.08 1.04 7.81 -51.93 -0.41 0.64 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -36.02 366.98 -6.83 -42.85 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.20 Total: 6.95 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 1.14 Total: 13.15 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.88 Total: -54.97 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.70 Total: -28.35 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.02 -6.83 -42.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189115853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.799 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds