Wall clock time and date at job start Fri Apr 10 2020 18:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99764 * 2 1 4 4 H 1.09000 * 109.47528 * 330.00631 * 3 2 1 5 5 C 1.53004 * 109.46998 * 90.00273 * 3 2 1 6 6 C 1.50700 * 109.47347 * 210.00160 * 3 2 1 7 7 O 1.21276 * 119.99976 * 348.73737 * 6 3 2 8 8 N 1.34781 * 119.99967 * 168.74168 * 6 3 2 9 9 C 1.47015 * 125.64842 * 5.10891 * 8 6 3 10 10 C 1.54328 * 107.27157 * 181.01360 * 9 8 6 11 11 C 1.55158 * 102.93963 * 22.18585 * 10 9 8 12 12 H 1.08998 * 111.00403 * 82.61734 * 11 10 9 13 13 N 1.46907 * 111.00263 * 206.42403 * 11 10 9 14 14 C 1.46900 * 110.99886 * 307.43632 * 13 11 10 15 15 C 1.46897 * 110.99586 * 183.47645 * 13 11 10 16 16 C 1.50701 * 109.46934 * 190.00142 * 15 13 11 17 17 O 1.21301 * 119.99796 * 0.02562 * 16 15 13 18 18 N 1.34773 * 120.00448 * 180.02562 * 16 15 13 19 19 C 1.37093 * 120.00184 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00420 * 0.28320 * 19 18 16 21 21 C 1.38959 * 119.99965 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00064 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99927 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47505 * 89.99508 * 23 21 19 25 25 H 1.48504 * 109.47115 * 209.99621 * 23 21 19 26 26 H 1.48502 * 109.47311 * 329.99518 * 23 21 19 27 27 C 1.47425 * 125.64379 * 185.04711 * 8 6 3 28 28 H 1.09004 * 109.47129 * 299.99719 * 1 2 3 29 29 H 1.09000 * 109.46976 * 60.00249 * 1 2 3 30 30 H 1.09000 * 109.46660 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46622 * 306.71953 * 5 3 2 32 32 H 1.09001 * 109.47374 * 66.71974 * 5 3 2 33 33 H 1.09004 * 109.46890 * 186.72270 * 5 3 2 34 34 H 1.08993 * 109.88760 * 61.59298 * 9 8 6 35 35 H 1.09007 * 110.00935 * 300.49424 * 9 8 6 36 36 H 1.09000 * 110.71699 * 263.82879 * 10 9 8 37 37 H 1.08996 * 110.87774 * 140.62389 * 10 9 8 38 38 H 1.09000 * 109.46722 * 291.12058 * 14 13 11 39 39 H 1.08993 * 109.47543 * 51.12329 * 14 13 11 40 40 H 1.08997 * 109.46654 * 171.12605 * 14 13 11 41 41 H 1.09000 * 109.47142 * 70.00492 * 15 13 11 42 42 H 1.08999 * 109.47602 * 309.99970 * 15 13 11 43 43 H 0.97004 * 119.99361 * 0.02562 * 18 16 15 44 44 H 0.97003 * 119.99932 * 180.02562 * 22 21 19 45 45 H 1.08995 * 110.36747 * 37.08501 * 27 8 6 46 46 H 1.09003 * 110.36998 * 274.75554 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.8435 0.1975 -0.9903 8 7 3.9655 2.4123 -1.0346 9 6 3.5226 3.7643 -0.6645 10 6 4.5324 4.7600 -1.2733 11 6 5.1722 3.9439 -2.4274 12 1 4.5462 3.9715 -3.3193 13 7 6.5280 4.4255 -2.7242 14 6 6.5326 5.8763 -2.9549 15 6 7.1022 3.7082 -3.8704 16 6 8.5655 4.0470 -3.9931 17 8 9.0796 4.8106 -3.2031 18 7 9.3030 3.5017 -4.9806 19 6 10.6341 3.8104 -5.0925 20 1 11.0928 4.4870 -4.3867 21 6 11.3946 3.2477 -6.1103 22 7 12.6706 3.5432 -6.2173 23 14 10.6031 2.0713 -7.3265 24 1 10.0737 2.8373 -8.4833 25 1 11.6161 1.0947 -7.8013 26 1 9.4904 1.3467 -6.6617 27 6 5.2097 2.5201 -1.8181 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.2787 1.6877 1.9899 32 1 2.9736 1.1482 1.9205 33 1 2.5484 2.8100 1.4449 34 1 3.5099 3.8662 0.4206 35 1 2.5272 3.9538 -1.0662 36 1 5.2854 5.0436 -0.5380 37 1 4.0227 5.6420 -1.6611 38 1 6.0161 6.0972 -3.8890 39 1 6.0238 6.3768 -2.1312 40 1 7.5614 6.2311 -3.0159 41 1 6.5830 4.0047 -4.7817 42 1 6.9893 2.6344 -3.7208 43 1 8.8918 2.8914 -5.6125 44 1 13.2014 3.1507 -6.9281 45 1 5.2266 1.7697 -2.6084 46 1 6.0779 2.4082 -1.1687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189115853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:11 Heat of formation + Delta-G solvation = -116.022148 kcal Electronic energy + Delta-G solvation = -26605.315749 eV Core-core repulsion = 22722.971719 eV Total energy + Delta-G solvation = -3882.344030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47763 -40.51678 -39.37077 -38.33998 -36.79806 -35.83880 -33.75829 -33.09518 -31.64644 -29.84770 -29.44204 -27.71460 -26.70133 -25.94605 -24.49654 -23.44738 -21.37843 -21.15656 -20.53994 -20.14772 -18.59922 -17.95340 -17.83663 -17.22052 -16.84037 -16.57261 -16.48808 -16.14026 -15.80605 -15.62143 -15.36105 -14.88356 -14.80920 -14.62336 -14.39088 -14.26531 -14.04467 -13.84893 -13.63587 -13.31542 -13.27384 -13.13374 -12.79249 -12.77021 -12.54170 -12.41354 -12.35469 -12.14364 -12.00007 -11.86122 -11.76414 -11.47295 -11.07630 -10.58202 -10.37735 -10.23671 -9.74336 -9.24772 -8.41815 -6.01888 1.29547 1.33277 1.42421 1.46358 1.60240 1.95136 2.21552 2.57665 2.93700 3.14369 3.19678 3.33116 3.61435 3.68029 3.87839 3.98324 4.05993 4.10282 4.24207 4.28671 4.34925 4.42296 4.45244 4.53610 4.55487 4.60394 4.66217 4.71443 4.76622 4.82720 4.86629 4.91738 4.99567 5.13948 5.18277 5.22230 5.30178 5.52670 5.87638 5.98337 6.07166 6.18434 6.43589 6.59303 6.88402 7.04316 7.39635 7.96575 8.75712 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.002709 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.482419 B =10332.439030 C =11271.838886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.079 3.921 4 H 0.120 0.880 5 C -0.169 4.169 6 C 0.519 3.481 7 O -0.580 6.580 8 N -0.613 5.613 9 C 0.094 3.906 10 C -0.118 4.118 11 C 0.074 3.926 12 H 0.076 0.924 13 N -0.530 5.530 14 C 0.026 3.974 15 C 0.052 3.948 16 C 0.453 3.547 17 O -0.602 6.602 18 N -0.595 5.595 19 C -0.324 4.324 20 H 0.058 0.942 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.961 3.039 24 H -0.255 1.255 25 H -0.276 1.276 26 H -0.236 1.236 27 C 0.113 3.887 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.034 0.966 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.388 0.612 44 H 0.279 0.721 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.072 0.282 9.996 33.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.018 3.982 4 H 0.137 0.863 5 C -0.226 4.226 6 C 0.308 3.692 7 O -0.459 6.459 8 N -0.348 5.348 9 C -0.027 4.027 10 C -0.156 4.156 11 C -0.035 4.035 12 H 0.093 0.907 13 N -0.255 5.255 14 C -0.121 4.121 15 C -0.079 4.079 16 C 0.241 3.759 17 O -0.485 6.485 18 N -0.237 5.237 19 C -0.454 4.454 20 H 0.076 0.924 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.782 3.218 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.160 1.160 27 C -0.011 4.011 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.052 0.948 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.123 0.877 43 H 0.223 0.777 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -30.922 -0.112 10.728 32.730 hybrid contribution 0.281 -0.531 -1.566 1.677 sum -30.641 -0.643 9.163 31.988 Atomic orbital electron populations 1.23107 0.78399 1.04181 1.01675 1.88020 1.22155 1.26625 1.95202 1.21998 0.91390 0.86925 0.97860 0.86289 1.22295 1.04158 1.02866 0.93268 1.20904 0.87335 0.82195 0.78743 1.90711 1.68226 1.31128 1.55868 1.48413 1.25647 1.06974 1.53740 1.22521 0.99558 0.78862 1.01790 1.22791 0.98113 0.98048 0.96674 1.22796 0.88424 0.93589 0.98647 0.90657 1.61452 1.19943 1.05553 1.38510 1.22470 1.02446 0.86405 1.00764 1.21860 0.90817 1.00753 0.94498 1.20794 0.89705 0.83434 0.81951 1.90513 1.74304 1.39428 1.44279 1.42070 1.09002 1.43698 1.28880 1.18993 0.84893 1.27430 1.14044 0.92409 1.26069 0.95780 0.99780 0.99716 1.69797 1.07941 1.45418 1.34298 0.85410 0.79275 0.78409 0.78735 1.17899 1.20084 1.15978 1.22121 0.86782 0.97270 0.94891 0.91564 0.92573 0.88853 0.88862 0.93510 0.88385 0.88706 0.87794 0.89953 0.86789 0.94757 0.88771 0.92948 0.90029 0.87661 0.77704 0.91182 0.91948 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.45 16 2 O -0.40 -8.30 9.91 -130.19 -1.29 -9.59 16 3 C 0.08 1.24 2.54 29.85 0.08 1.31 16 4 H 0.12 0.96 7.55 -2.39 -0.02 0.95 16 5 C -0.17 -1.81 9.36 71.98 0.67 -1.13 16 6 C 0.52 12.75 7.18 87.66 0.63 13.38 16 7 O -0.58 -21.12 16.84 15.78 0.27 -20.85 16 8 N -0.61 -12.02 3.33 -811.81 -2.70 -14.72 16 9 C 0.09 0.91 6.01 86.73 0.52 1.43 16 10 C -0.12 -1.45 4.94 31.78 0.16 -1.29 16 11 C 0.07 1.45 2.72 46.31 0.13 1.57 16 12 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 13 N -0.53 -14.88 4.40 -893.44 -3.93 -18.81 16 14 C 0.03 0.71 9.00 127.69 1.15 1.85 16 15 C 0.05 1.63 5.36 85.56 0.46 2.09 16 16 C 0.45 20.62 7.54 87.66 0.66 21.28 16 17 O -0.60 -32.89 13.88 -3.09 -0.04 -32.93 16 18 N -0.59 -28.59 5.09 -306.97 -1.56 -30.15 16 19 C -0.32 -19.20 10.16 84.04 0.85 -18.35 16 20 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 21 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.93 -56.94 13.96 21.67 0.30 -56.64 16 23 Si 0.96 39.86 27.74 68.60 1.90 41.76 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.24 -8.47 6.52 99.48 0.65 -7.83 16 27 C 0.11 2.72 5.74 86.86 0.50 3.21 16 28 H 0.07 0.37 7.76 -2.39 -0.02 0.36 16 29 H 0.06 0.42 8.08 -2.39 -0.02 0.40 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.61 7.76 -2.38 -0.02 0.59 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.58 5.58 -2.38 -0.01 0.57 16 34 H 0.09 0.60 6.08 -2.39 -0.01 0.59 16 35 H 0.10 0.38 7.98 -2.38 -0.02 0.36 16 36 H 0.08 1.24 7.99 -2.39 -0.02 1.22 16 37 H 0.11 0.78 7.95 -2.39 -0.02 0.76 16 38 H 0.03 0.78 8.08 -2.39 -0.02 0.77 16 39 H 0.09 1.87 6.40 -2.39 -0.02 1.86 16 40 H 0.05 1.92 5.98 -2.39 -0.01 1.91 16 41 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 42 H 0.11 3.00 7.13 -2.39 -0.02 2.99 16 43 H 0.39 15.68 5.76 -92.71 -0.53 15.15 16 44 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 45 H 0.06 1.67 7.81 -2.39 -0.02 1.65 16 46 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -88.55 366.98 0.84 -87.71 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.40 Total: 27.80 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 7.50 Total: 26.44 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -7.89 Total: -120.33 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -1.07 Total: -63.38 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.90 Total: 41.76 kcal Total: -88.55 0.84 -87.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189115853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.317 kcal (2) G-P(sol) polarization free energy of solvation -88.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds