Wall clock time and date at job start Fri Apr 10 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99808 * 2 1 4 4 C 1.50699 * 109.47246 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99822 * 359.72251 * 4 3 2 6 6 N 1.34770 * 120.00177 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00411 * 179.72439 * 6 4 3 8 8 H 1.09008 * 109.46920 * 34.99574 * 7 6 4 9 9 C 1.53003 * 109.47024 * 274.99872 * 7 6 4 10 10 C 1.50699 * 109.47542 * 154.99836 * 7 6 4 11 11 O 1.21276 * 119.99689 * 26.31471 * 10 7 6 12 12 N 1.34778 * 119.99868 * 206.31628 * 10 7 6 13 13 C 1.47019 * 125.65026 * 4.95240 * 12 10 7 14 14 C 1.54328 * 107.27225 * 181.02454 * 13 12 10 15 15 C 1.55164 * 102.94030 * 22.19229 * 14 13 12 16 16 H 1.09008 * 110.99718 * 82.61130 * 15 14 13 17 17 N 1.46498 * 111.00226 * 206.42206 * 15 14 13 18 18 C 1.46495 * 120.00006 * 58.55067 * 17 15 14 19 19 C 1.36940 * 119.99991 * 238.54575 * 17 15 14 20 20 H 1.08004 * 119.99455 * 23.37711 * 19 17 15 21 21 C 1.38807 * 119.99881 * 203.37483 * 19 17 15 22 22 N 1.31617 * 120.00124 * 13.92760 * 21 19 17 23 23 Si 1.86806 * 119.99811 * 193.92368 * 21 19 17 24 24 H 1.48493 * 109.46938 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46640 * 120.00319 * 23 21 19 26 26 H 1.48500 * 109.46960 * 239.99960 * 23 21 19 27 27 C 1.47421 * 125.64454 * 184.64909 * 12 10 7 28 28 H 1.09000 * 109.47289 * 299.99837 * 1 2 3 29 29 H 1.09000 * 109.47041 * 60.00131 * 1 2 3 30 30 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47063 * 59.99453 * 3 2 1 32 32 H 1.09004 * 109.46913 * 299.99808 * 3 2 1 33 33 H 0.97008 * 120.00142 * 359.71992 * 6 4 3 34 34 H 1.08995 * 109.47252 * 295.87909 * 9 7 6 35 35 H 1.09001 * 109.46979 * 55.88124 * 9 7 6 36 36 H 1.09001 * 109.47265 * 175.87315 * 9 7 6 37 37 H 1.09003 * 109.88405 * 300.44180 * 13 12 10 38 38 H 1.08996 * 109.88088 * 61.45133 * 13 12 10 39 39 H 1.09000 * 110.71885 * 140.55493 * 14 13 12 40 40 H 1.08999 * 110.71783 * 263.83478 * 14 13 12 41 41 H 1.09005 * 109.47301 * 95.16550 * 18 17 15 42 42 H 1.08995 * 109.47142 * 215.17030 * 18 17 15 43 43 H 1.09002 * 109.47167 * 335.16512 * 18 17 15 44 44 H 0.97005 * 120.00075 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36835 * 274.74042 * 27 12 10 46 46 H 1.09002 * 110.36961 * 37.06976 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0917 0.0061 6 7 4.2764 2.2969 0.0013 7 6 5.7368 2.1814 0.0080 8 1 6.0352 1.3120 -0.5780 9 6 6.2289 2.0194 1.4476 10 6 6.3419 3.4239 -0.5929 11 8 5.7372 4.4743 -0.5504 12 7 7.5550 3.3678 -1.1775 13 6 8.3483 2.1483 -1.3895 14 6 9.6689 2.5727 -2.0662 15 6 9.7887 4.0719 -1.6846 16 1 10.2150 4.1885 -0.6881 17 7 10.5760 4.8054 -2.6787 18 6 10.1487 4.8283 -4.0797 19 6 11.7115 5.4697 -2.2982 20 1 12.2380 5.1706 -1.4039 21 6 12.1856 6.5274 -3.0620 22 7 11.4177 7.0704 -3.9828 23 14 13.9135 7.1802 -2.7828 24 1 14.5669 6.4034 -1.6990 25 1 14.7021 7.0439 -4.0336 26 1 13.8449 8.6118 -2.3943 27 6 8.3033 4.5182 -1.7158 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8592 3.1727 -0.0028 34 1 5.9949 2.9200 2.0151 35 1 5.7354 1.1625 1.9061 36 1 7.3073 1.8601 1.4473 37 1 8.5589 1.6718 -0.4321 38 1 7.8034 1.4591 -2.0345 39 1 10.5079 2.0043 -1.6648 40 1 9.6034 2.4541 -3.1477 41 1 9.5623 5.7281 -4.2661 42 1 11.0256 4.8254 -4.7271 43 1 9.5402 3.9483 -4.2884 44 1 11.7492 7.8093 -4.5167 45 1 7.9899 4.7299 -2.7381 46 1 8.1577 5.3946 -1.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190330129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:14 Heat of formation + Delta-G solvation = -81.076039 kcal Electronic energy + Delta-G solvation = -26551.865081 eV Core-core repulsion = 22671.036428 eV Total energy + Delta-G solvation = -3880.828652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.57947 -39.54753 -37.92405 -37.44249 -35.05672 -34.89689 -32.03695 -31.20199 -29.80408 -28.84673 -27.95472 -26.26916 -26.11099 -24.82265 -23.01710 -22.34624 -20.76393 -19.49873 -19.32609 -17.96316 -17.14646 -17.07448 -16.64906 -16.53932 -15.91705 -15.84455 -15.28391 -15.04482 -14.66574 -14.34954 -14.01712 -13.60719 -13.37974 -13.33720 -13.03363 -12.90955 -12.65972 -12.47714 -12.45547 -12.18245 -12.00572 -11.85936 -11.78141 -11.52136 -10.96647 -10.84713 -10.55852 -10.52715 -10.30637 -10.20819 -10.08679 -9.94763 -9.88921 -9.82470 -9.35893 -8.65574 -8.44271 -6.85702 -5.81265 -3.29538 2.27239 2.35854 2.64734 3.14184 3.33543 3.41191 3.43023 3.73322 4.31703 4.42267 4.46258 4.70440 4.74487 4.89557 4.91644 4.93692 4.95444 4.98079 5.20639 5.23360 5.27132 5.39680 5.48419 5.50889 5.60419 5.73041 5.82307 5.92329 5.96572 6.08077 6.24077 6.32032 6.42310 6.53893 6.56830 6.71641 6.81381 7.22258 7.27283 7.62523 7.65560 7.73691 7.93688 8.13711 8.30348 9.13236 9.75605 10.24304 11.22957 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.002373 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.381776 B =11797.626671 C =11910.001899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.517 3.483 5 O -0.519 6.519 6 N -0.713 5.713 7 C 0.131 3.869 8 H 0.109 0.891 9 C -0.155 4.155 10 C 0.523 3.477 11 O -0.544 6.544 12 N -0.606 5.606 13 C 0.098 3.902 14 C -0.153 4.153 15 C 0.173 3.827 16 H 0.079 0.921 17 N -0.584 5.584 18 C 0.157 3.843 19 C -0.262 4.262 20 H 0.071 0.929 21 C 0.005 3.995 22 N -0.902 5.902 23 Si 0.907 3.093 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.087 3.913 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.042 0.958 43 H 0.003 0.997 44 H 0.254 0.746 45 H 0.070 0.930 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.061 -11.871 7.921 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.302 3.698 5 O -0.394 6.394 6 N -0.370 5.370 7 C 0.023 3.977 8 H 0.126 0.874 9 C -0.214 4.214 10 C 0.310 3.690 11 O -0.422 6.422 12 N -0.339 5.339 13 C -0.025 4.025 14 C -0.194 4.194 15 C 0.062 3.938 16 H 0.098 0.902 17 N -0.304 5.304 18 C 0.013 3.987 19 C -0.391 4.391 20 H 0.089 0.911 21 C -0.194 4.194 22 N -0.546 5.546 23 Si 0.736 3.264 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.217 1.217 27 C -0.037 4.037 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.886 -12.120 7.821 22.208 hybrid contribution 0.428 1.169 -0.035 1.245 sum -16.458 -10.951 7.787 21.247 Atomic orbital electron populations 1.22853 0.80235 1.03380 1.00226 1.88013 1.19885 1.25104 1.95460 1.22207 0.91281 0.87087 1.03001 1.20234 0.88750 0.84342 0.76467 1.90737 1.74522 1.26367 1.47766 1.45689 1.05670 1.09730 1.75867 1.20763 0.80657 0.97525 0.98793 0.87357 1.22056 1.02213 1.03217 0.93894 1.20090 0.80678 0.89954 0.78318 1.90687 1.60472 1.31619 1.59436 1.48490 1.17232 1.10909 1.57293 1.22154 0.93041 0.86960 1.00343 1.23229 0.94614 1.00161 1.01358 1.21520 0.88493 0.89462 0.94285 0.90237 1.43869 1.25869 1.58071 1.02579 1.20826 0.97873 0.95786 0.84208 1.19248 0.99690 1.09748 1.10447 0.91122 1.25076 0.98754 0.96261 0.99323 1.70079 1.34646 1.24898 1.25005 0.86158 0.84148 0.78480 0.77568 1.20212 1.21541 1.21671 1.23215 0.93369 0.88129 0.98985 0.93736 0.93702 0.89024 0.89946 0.89933 0.75250 0.91562 0.90812 0.90663 0.91459 0.91747 0.90352 0.90401 0.94824 0.93894 0.97852 0.93619 0.91189 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.84 10.24 -55.14 -0.56 -4.41 16 3 C 0.04 0.37 6.42 36.01 0.23 0.60 16 4 C 0.52 6.01 7.87 -10.99 -0.09 5.93 16 5 O -0.52 -8.08 16.16 -14.35 -0.23 -8.31 16 6 N -0.71 -7.79 5.05 -54.93 -0.28 -8.07 16 7 C 0.13 1.58 2.54 -69.08 -0.18 1.40 16 8 H 0.11 1.33 6.69 -51.92 -0.35 0.98 16 9 C -0.16 -1.63 9.47 37.16 0.35 -1.28 16 10 C 0.52 7.85 7.04 -10.99 -0.08 7.78 16 11 O -0.54 -9.72 16.32 5.56 0.09 -9.63 16 12 N -0.61 -9.28 3.32 -170.38 -0.57 -9.85 16 13 C 0.10 1.25 6.09 -3.06 -0.02 1.23 16 14 C -0.15 -2.31 6.49 -24.89 -0.16 -2.47 16 15 C 0.17 3.29 3.55 -65.66 -0.23 3.05 16 16 H 0.08 1.52 7.95 -51.92 -0.41 1.11 16 17 N -0.58 -13.79 2.96 -170.89 -0.51 -14.29 16 18 C 0.16 3.68 7.60 59.84 0.45 4.13 16 19 C -0.26 -6.88 9.60 -15.06 -0.14 -7.02 16 20 H 0.07 1.81 7.86 -52.48 -0.41 1.39 16 21 C 0.00 0.14 5.08 -17.43 -0.09 0.05 16 22 N -0.90 -25.63 10.78 55.49 0.60 -25.03 16 23 Si 0.91 21.25 29.58 -169.99 -5.03 16.22 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.09 1.61 6.45 -2.41 -0.02 1.59 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.41 4.02 7.80 -40.82 -0.32 3.70 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.72 7.64 -51.93 -0.40 0.33 16 37 H 0.07 0.72 7.64 -51.93 -0.40 0.32 16 38 H 0.06 0.74 7.99 -51.93 -0.41 0.33 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.23 6.36 -51.93 -0.33 0.90 16 41 H 0.03 0.86 7.33 -51.93 -0.38 0.48 16 42 H 0.04 1.08 7.39 -51.93 -0.38 0.70 16 43 H 0.00 0.06 6.33 -51.93 -0.33 -0.27 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.07 1.40 7.05 -51.93 -0.37 1.03 16 46 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -33.35 374.51 -7.12 -40.47 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.43 Total: 0.96 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 1.15 Total: 16.29 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.75 Total: -57.24 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.71 Total: -22.34 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.35 -7.12 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190330129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.607 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds