Wall clock time and date at job start Fri Apr 10 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99808 * 2 1 4 4 C 1.50699 * 109.47246 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99822 * 359.72251 * 4 3 2 6 6 N 1.34770 * 120.00177 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00411 * 179.72439 * 6 4 3 8 8 H 1.09008 * 109.46920 * 34.99574 * 7 6 4 9 9 C 1.53003 * 109.47024 * 274.99872 * 7 6 4 10 10 C 1.50699 * 109.47542 * 154.99836 * 7 6 4 11 11 O 1.21276 * 119.99689 * 26.31471 * 10 7 6 12 12 N 1.34778 * 119.99868 * 206.31628 * 10 7 6 13 13 C 1.47019 * 125.65026 * 4.95240 * 12 10 7 14 14 C 1.54328 * 107.27225 * 181.02454 * 13 12 10 15 15 C 1.55164 * 102.94030 * 22.19229 * 14 13 12 16 16 H 1.09008 * 110.99718 * 82.61130 * 15 14 13 17 17 N 1.46498 * 111.00226 * 206.42206 * 15 14 13 18 18 C 1.46495 * 120.00006 * 58.55067 * 17 15 14 19 19 C 1.36940 * 119.99991 * 238.54575 * 17 15 14 20 20 H 1.08004 * 119.99455 * 23.37711 * 19 17 15 21 21 C 1.38807 * 119.99881 * 203.37483 * 19 17 15 22 22 N 1.31617 * 120.00124 * 13.92760 * 21 19 17 23 23 Si 1.86806 * 119.99811 * 193.92368 * 21 19 17 24 24 H 1.48493 * 109.46938 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46640 * 120.00319 * 23 21 19 26 26 H 1.48500 * 109.46960 * 239.99960 * 23 21 19 27 27 C 1.47421 * 125.64454 * 184.64909 * 12 10 7 28 28 H 1.09000 * 109.47289 * 299.99837 * 1 2 3 29 29 H 1.09000 * 109.47041 * 60.00131 * 1 2 3 30 30 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47063 * 59.99453 * 3 2 1 32 32 H 1.09004 * 109.46913 * 299.99808 * 3 2 1 33 33 H 0.97008 * 120.00142 * 359.71992 * 6 4 3 34 34 H 1.08995 * 109.47252 * 295.87909 * 9 7 6 35 35 H 1.09001 * 109.46979 * 55.88124 * 9 7 6 36 36 H 1.09001 * 109.47265 * 175.87315 * 9 7 6 37 37 H 1.09003 * 109.88405 * 300.44180 * 13 12 10 38 38 H 1.08996 * 109.88088 * 61.45133 * 13 12 10 39 39 H 1.09000 * 110.71885 * 140.55493 * 14 13 12 40 40 H 1.08999 * 110.71783 * 263.83478 * 14 13 12 41 41 H 1.09005 * 109.47301 * 95.16550 * 18 17 15 42 42 H 1.08995 * 109.47142 * 215.17030 * 18 17 15 43 43 H 1.09002 * 109.47167 * 335.16512 * 18 17 15 44 44 H 0.97005 * 120.00075 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.36835 * 274.74042 * 27 12 10 46 46 H 1.09002 * 110.36961 * 37.06976 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0917 0.0061 6 7 4.2764 2.2969 0.0013 7 6 5.7368 2.1814 0.0080 8 1 6.0352 1.3120 -0.5780 9 6 6.2289 2.0194 1.4476 10 6 6.3419 3.4239 -0.5929 11 8 5.7372 4.4743 -0.5504 12 7 7.5550 3.3678 -1.1775 13 6 8.3483 2.1483 -1.3895 14 6 9.6689 2.5727 -2.0662 15 6 9.7887 4.0719 -1.6846 16 1 10.2150 4.1885 -0.6881 17 7 10.5760 4.8054 -2.6787 18 6 10.1487 4.8283 -4.0797 19 6 11.7115 5.4697 -2.2982 20 1 12.2380 5.1706 -1.4039 21 6 12.1856 6.5274 -3.0620 22 7 11.4177 7.0704 -3.9828 23 14 13.9135 7.1802 -2.7828 24 1 14.5669 6.4034 -1.6990 25 1 14.7021 7.0439 -4.0336 26 1 13.8449 8.6118 -2.3943 27 6 8.3033 4.5182 -1.7158 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8592 3.1727 -0.0028 34 1 5.9949 2.9200 2.0151 35 1 5.7354 1.1625 1.9061 36 1 7.3073 1.8601 1.4473 37 1 8.5589 1.6718 -0.4321 38 1 7.8034 1.4591 -2.0345 39 1 10.5079 2.0043 -1.6648 40 1 9.6034 2.4541 -3.1477 41 1 9.5623 5.7281 -4.2661 42 1 11.0256 4.8254 -4.7271 43 1 9.5402 3.9483 -4.2884 44 1 11.7492 7.8093 -4.5167 45 1 7.9899 4.7299 -2.7381 46 1 8.1577 5.3946 -1.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190330129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:14 Heat of formation + Delta-G solvation = -104.968856 kcal Electronic energy + Delta-G solvation = -26552.901151 eV Core-core repulsion = 22671.036428 eV Total energy + Delta-G solvation = -3881.864723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66912 -40.60648 -39.07652 -38.37555 -36.60214 -36.07140 -33.60124 -32.39392 -31.20502 -29.62996 -29.25569 -28.06870 -26.84480 -26.06355 -24.49932 -23.63105 -21.68062 -20.98986 -20.51026 -19.00937 -18.89628 -17.94536 -17.70219 -17.43033 -17.27414 -16.72153 -16.54241 -16.21135 -15.87816 -15.40991 -15.19618 -15.09731 -14.81779 -14.40315 -14.23287 -14.15722 -14.05500 -13.73285 -13.40221 -13.27645 -13.14372 -13.09589 -12.80966 -12.72141 -12.49651 -12.41668 -12.34970 -12.16256 -12.04004 -11.81843 -11.41663 -11.08678 -10.97128 -10.76827 -10.65661 -10.32626 -9.75364 -8.80096 -7.84314 -5.34632 1.27843 1.46731 1.48226 1.48931 1.54545 1.59389 2.07147 2.50984 3.09235 3.22655 3.30680 3.53171 3.67574 3.90758 3.97159 3.99841 4.02972 4.19039 4.20443 4.26285 4.32036 4.42846 4.52436 4.58798 4.60121 4.67131 4.71576 4.78538 4.84870 4.88931 5.00062 5.10213 5.11809 5.20272 5.21433 5.30107 5.42730 5.65239 5.70033 6.00856 6.31080 6.39958 6.42477 6.90911 7.07894 7.12595 7.83138 8.27358 9.18377 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.002373 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.381776 B =11797.626671 C =11910.001899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.045 3.955 4 C 0.516 3.484 5 O -0.563 6.563 6 N -0.708 5.708 7 C 0.138 3.862 8 H 0.112 0.888 9 C -0.149 4.149 10 C 0.523 3.477 11 O -0.577 6.577 12 N -0.606 5.606 13 C 0.100 3.900 14 C -0.140 4.140 15 C 0.166 3.834 16 H 0.079 0.921 17 N -0.600 5.600 18 C 0.175 3.825 19 C -0.264 4.264 20 H 0.077 0.923 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.969 3.031 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.296 1.296 27 C 0.099 3.901 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.417 0.583 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.001 0.999 42 H 0.017 0.983 43 H 0.035 0.965 44 H 0.248 0.752 45 H 0.050 0.950 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.747 -13.631 9.287 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.034 4.034 4 C 0.303 3.697 5 O -0.440 6.440 6 N -0.364 5.364 7 C 0.030 3.970 8 H 0.130 0.870 9 C -0.208 4.208 10 C 0.312 3.688 11 O -0.457 6.457 12 N -0.339 5.339 13 C -0.021 4.021 14 C -0.179 4.179 15 C 0.057 3.943 16 H 0.097 0.903 17 N -0.321 5.321 18 C 0.031 3.969 19 C -0.394 4.394 20 H 0.095 0.905 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.223 1.223 27 C -0.026 4.026 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.255 0.745 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.020 0.980 42 H 0.035 0.965 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.596 -13.914 9.223 24.255 hybrid contribution 0.551 1.690 -0.417 1.826 sum -17.045 -12.224 8.805 22.748 Atomic orbital electron populations 1.23046 0.78214 1.04242 1.01645 1.87955 1.22167 1.26410 1.95808 1.22332 0.88657 0.86950 1.05440 1.20861 0.90180 0.83528 0.75122 1.90712 1.75525 1.27857 1.49936 1.45698 1.05262 1.10095 1.75379 1.20714 0.81294 0.95473 0.99529 0.87017 1.22032 1.03028 1.03218 0.92509 1.20629 0.80138 0.90522 0.77541 1.90674 1.61289 1.33167 1.60535 1.48491 1.17543 1.10676 1.57174 1.22334 0.91515 0.86005 1.02285 1.23082 0.96767 0.96784 1.01308 1.21683 0.87836 0.91487 0.93298 0.90288 1.44043 1.26230 1.58404 1.03421 1.20509 0.96545 0.95715 0.84168 1.19614 1.00513 1.09210 1.10075 0.90513 1.25844 1.02193 0.97079 0.99721 1.70246 1.36175 1.25606 1.26320 0.85169 0.80113 0.77442 0.77488 1.18665 1.21896 1.22308 1.22761 0.93713 0.88648 0.97504 0.92116 0.92417 0.88592 0.87045 0.87660 0.74513 0.91710 0.90532 0.89395 0.88299 0.89629 0.88421 0.91074 0.98043 0.96455 0.94642 0.94275 0.93151 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -7.80 10.24 -129.94 -1.33 -9.13 16 3 C 0.05 0.65 6.42 71.24 0.46 1.11 16 4 C 0.52 11.13 7.87 87.66 0.69 11.82 16 5 O -0.56 -16.84 16.16 16.01 0.26 -16.58 16 6 N -0.71 -14.19 5.05 -446.10 -2.25 -16.45 16 7 C 0.14 3.04 2.54 44.25 0.11 3.16 16 8 H 0.11 2.45 6.69 -2.38 -0.02 2.43 16 9 C -0.15 -2.77 9.47 71.98 0.68 -2.09 16 10 C 0.52 14.99 7.04 87.66 0.62 15.60 16 11 O -0.58 -20.33 16.32 -3.02 -0.05 -20.38 16 12 N -0.61 -17.60 3.32 -811.36 -2.70 -20.30 16 13 C 0.10 2.23 6.09 86.73 0.53 2.76 16 14 C -0.14 -3.84 6.49 31.79 0.21 -3.64 16 15 C 0.17 6.16 3.55 46.46 0.17 6.32 16 16 H 0.08 2.93 7.95 -2.38 -0.02 2.91 16 17 N -0.60 -28.48 2.96 -694.58 -2.05 -30.53 16 18 C 0.18 8.38 7.60 127.77 0.97 9.35 16 19 C -0.26 -13.90 9.60 84.03 0.81 -13.09 16 20 H 0.08 3.87 7.86 -2.91 -0.02 3.84 16 21 C -0.05 -2.91 5.08 84.86 0.43 -2.47 16 22 N -0.94 -54.92 10.78 21.65 0.23 -54.68 16 23 Si 0.97 44.16 29.58 68.60 2.03 46.19 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 27 C 0.10 3.67 6.45 86.93 0.56 4.23 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.42 7.45 7.80 -92.70 -0.72 6.72 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.40 7.64 -2.39 -0.02 1.38 16 37 H 0.10 1.65 7.64 -2.39 -0.02 1.64 16 38 H 0.09 1.63 7.99 -2.39 -0.02 1.61 16 39 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.08 6.36 -2.39 -0.02 2.06 16 41 H 0.00 0.07 7.33 -2.38 -0.02 0.05 16 42 H 0.02 0.88 7.39 -2.39 -0.02 0.86 16 43 H 0.04 1.42 6.33 -2.39 -0.02 1.41 16 44 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 45 H 0.05 2.06 7.05 -2.39 -0.02 2.04 16 46 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 Total: -1.00 -74.46 374.51 1.87 -72.59 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.26 Total: 14.73 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: 7.48 Total: 34.54 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -6.77 Total: -121.96 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.12 Total: -46.09 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -74.46 1.87 -72.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190330129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.378 kcal (2) G-P(sol) polarization free energy of solvation -74.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds