Wall clock time and date at job start Fri Apr 10 2020 18:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 H 1.08994 * 109.47405 * 305.00047 * 3 2 1 5 5 C 1.52996 * 109.47068 * 65.00368 * 3 2 1 6 6 C 1.50702 * 109.47159 * 185.00014 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09007 * 110.62723 * 36.65673 * 9 8 6 11 11 C 1.54322 * 110.70792 * 273.55398 * 9 8 6 12 12 N 1.47444 * 107.23033 * 219.33262 * 11 9 8 13 13 C 1.46903 * 110.99882 * 236.74082 * 12 11 9 14 14 C 1.50698 * 109.47127 * 169.99904 * 13 12 11 15 15 O 1.21291 * 120.00017 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00167 * 179.97438 * 14 13 12 17 17 C 1.37089 * 120.00210 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00196 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00003 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99887 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00030 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47202 * 89.99645 * 21 19 17 23 23 H 1.48497 * 109.47036 * 209.99900 * 21 19 17 24 24 H 1.48503 * 109.46905 * 329.99660 * 21 19 17 25 25 C 1.47847 * 108.57007 * 359.00729 * 12 11 9 26 26 C 1.54907 * 104.79721 * 24.09524 * 25 12 11 27 27 H 1.08999 * 110.98831 * 81.02022 * 26 25 12 28 28 O 1.42899 * 110.99551 * 204.84326 * 26 25 12 29 29 H 1.09009 * 109.47154 * 299.99844 * 1 2 3 30 30 H 1.09003 * 109.47483 * 59.99472 * 1 2 3 31 31 H 1.09001 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47154 * 240.00156 * 2 1 3 33 33 H 1.09003 * 109.47483 * 120.00527 * 2 1 3 34 34 H 1.09003 * 109.46851 * 300.00074 * 5 3 2 35 35 H 1.09002 * 109.47575 * 59.99595 * 5 3 2 36 36 H 1.09001 * 109.47551 * 179.97438 * 5 3 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 38 38 H 1.08997 * 109.88903 * 338.73064 * 11 9 8 39 39 H 1.08991 * 109.89317 * 99.76331 * 11 9 8 40 40 H 1.09001 * 109.47058 * 289.99670 * 13 12 11 41 41 H 1.09000 * 109.47315 * 49.99700 * 13 12 11 42 42 H 0.97005 * 119.99891 * 359.97438 * 16 14 13 43 43 H 0.96997 * 119.99515 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.37913 * 142.92572 * 25 12 11 45 45 H 1.09003 * 110.37385 * 265.16059 * 25 12 11 46 46 H 0.96704 * 113.98992 * 292.26463 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3950 -0.2047 8 7 4.2145 2.6118 -0.1509 9 6 5.6740 2.6138 -0.2774 10 1 6.0032 1.8124 -0.9389 11 6 6.3419 2.4867 1.1080 12 7 7.5185 3.3752 1.1088 13 6 8.7429 2.6272 1.4238 14 6 9.9442 3.5029 1.1769 15 8 9.7951 4.6387 0.7783 16 7 11.1843 3.0245 1.4001 17 6 12.2771 3.8214 1.1760 18 1 12.1443 4.8324 0.8203 19 6 13.5555 3.3282 1.4066 20 7 14.6031 4.0920 1.1914 21 14 13.7852 1.5792 2.0213 22 1 13.9084 0.6593 0.8620 23 1 15.0170 1.5026 2.8472 24 1 12.6128 1.1855 2.8432 25 6 7.6198 4.0235 -0.2161 26 6 6.1790 3.9905 -0.7839 27 1 5.5786 4.8019 -0.3727 28 8 6.1902 4.0376 -2.2121 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.5490 2.1251 1.3969 35 1 2.0699 1.5874 2.1492 36 1 1.9991 3.1540 1.3076 37 1 3.7322 3.4510 -0.0865 38 1 5.6437 2.7954 1.8860 39 1 6.6527 1.4557 1.2767 40 1 8.7239 2.3232 2.4704 41 1 8.8016 1.7426 0.7895 42 1 11.3036 2.1165 1.7200 43 1 15.4955 3.7476 1.3520 44 1 7.9623 5.0528 -0.1099 45 1 8.2967 3.4638 -0.8617 46 1 6.4986 4.8792 -2.5753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191098019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:31 Heat of formation + Delta-G solvation = -115.132546 kcal Electronic energy + Delta-G solvation = -26578.879435 eV Core-core repulsion = 22696.573981 eV Total energy + Delta-G solvation = -3882.305453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51463 -39.34335 -37.98317 -35.88784 -35.68337 -34.58503 -33.89008 -31.74414 -30.74864 -29.65437 -28.06103 -26.65372 -25.53823 -24.08356 -22.32610 -21.50636 -20.77308 -19.98646 -19.44525 -18.34847 -17.64187 -17.34252 -16.63448 -15.93886 -15.72604 -15.29129 -15.11454 -14.85997 -14.69792 -14.32912 -13.98503 -13.85577 -13.44949 -13.23753 -13.05903 -12.98394 -12.79050 -12.52790 -12.47081 -12.30786 -12.11603 -11.94980 -11.93627 -11.89639 -11.45385 -11.18149 -11.13189 -11.02157 -10.68785 -10.59987 -10.20528 -10.00543 -9.84597 -9.58421 -9.35509 -8.52516 -8.22225 -8.03593 -6.34492 -3.86024 2.45340 2.88841 3.01927 3.06192 3.14332 3.67508 3.71988 4.07894 4.21889 4.29051 4.37122 4.48319 4.56610 4.74828 4.87735 4.93869 4.95960 5.01848 5.12792 5.18271 5.18747 5.27536 5.31868 5.43384 5.50655 5.55778 5.60358 5.67079 5.73240 5.75760 5.85173 5.88233 5.91458 6.01979 6.06144 6.27536 6.42998 7.01981 7.07975 7.28158 7.51987 7.54287 8.03403 8.09971 8.55406 8.90766 9.38344 9.77192 10.78302 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.002608 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.624503 B =10735.139075 C =11363.194199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.097 0.903 5 C -0.146 4.146 6 C 0.517 3.483 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.132 3.868 10 H 0.101 0.899 11 C 0.033 3.967 12 N -0.502 5.502 13 C 0.035 3.965 14 C 0.450 3.550 15 O -0.566 6.566 16 N -0.587 5.587 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.879 5.879 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.032 3.968 26 C 0.081 3.919 27 H 0.076 0.924 28 O -0.560 6.560 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.371 0.629 43 H 0.274 0.726 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.529 -5.040 -1.329 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.132 4.132 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.303 3.697 7 O -0.414 6.414 8 N -0.368 5.368 9 C 0.026 3.974 10 H 0.119 0.881 11 C -0.096 4.096 12 N -0.228 5.228 13 C -0.097 4.097 14 C 0.236 3.764 15 O -0.449 6.449 16 N -0.226 5.226 17 C -0.434 4.434 18 H 0.138 0.862 19 C -0.161 4.161 20 N -0.519 5.519 21 Si 0.705 3.295 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.096 4.096 26 C 0.021 3.979 27 H 0.093 0.907 28 O -0.365 6.365 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.235 0.765 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.204 0.796 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.075 0.925 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -26.211 -5.240 -1.209 26.757 hybrid contribution 0.632 -1.034 -0.063 1.213 sum -25.579 -6.273 -1.272 26.368 Atomic orbital electron populations 1.21846 0.95471 1.01935 1.01837 1.21346 0.95322 0.94137 1.03594 1.21359 0.91660 0.99556 1.00619 0.88530 1.21839 1.02393 1.00259 0.95867 1.20735 0.89991 0.83526 0.75398 1.90711 1.70335 1.31388 1.48994 1.45926 1.06996 1.08881 1.74980 1.22132 0.79866 0.98217 0.97166 0.88054 1.23269 0.93303 0.96930 0.96100 1.63422 1.01505 1.28126 1.29715 1.22219 0.89929 0.95241 1.02275 1.19595 0.83544 0.88679 0.84623 1.90512 1.85069 1.19351 1.49931 1.42200 1.05909 1.14275 1.60178 1.19416 0.82594 0.98995 1.42396 0.86226 1.25050 0.95185 0.98265 0.97626 1.69621 0.98405 1.36204 1.47676 0.86676 0.78694 0.84569 0.79519 1.19595 1.20098 1.19411 1.23720 0.93977 1.03466 0.88482 1.23313 0.97186 0.96091 0.81353 0.90652 1.86471 1.89423 1.41510 1.19085 0.92412 0.92732 0.92454 0.91126 0.91248 0.91129 0.91903 0.92109 0.76464 0.89865 0.91604 0.88830 0.92925 0.79610 0.91559 0.87051 0.92499 0.76767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.15 0.36 -0.51 16 2 C -0.11 -0.84 4.75 -26.74 -0.13 -0.97 16 3 C -0.11 -0.82 2.72 -91.77 -0.25 -1.07 16 4 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 5 C -0.15 -0.82 8.85 37.16 0.33 -0.49 16 6 C 0.52 5.71 7.15 -10.98 -0.08 5.63 16 7 O -0.54 -8.19 15.64 5.55 0.09 -8.11 16 8 N -0.72 -7.08 5.03 -52.04 -0.26 -7.34 16 9 C 0.13 1.65 2.97 -66.10 -0.20 1.46 16 10 H 0.10 1.53 7.69 -51.93 -0.40 1.13 16 11 C 0.03 0.44 6.62 -2.83 -0.02 0.42 16 12 N -0.50 -7.98 5.21 -232.69 -1.21 -9.19 16 13 C 0.04 0.60 5.32 -4.98 -0.03 0.57 16 14 C 0.45 10.07 7.31 -10.99 -0.08 9.99 16 15 O -0.57 -14.42 13.13 5.55 0.07 -14.35 16 16 N -0.59 -13.93 5.09 -10.97 -0.06 -13.98 16 17 C -0.31 -8.56 10.16 -14.94 -0.15 -8.71 16 18 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 19 C 0.04 1.15 5.50 -17.46 -0.10 1.05 16 20 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 21 Si 0.88 19.42 27.74 -169.99 -4.71 14.70 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 25 C 0.03 0.50 4.68 -2.30 -0.01 0.49 16 26 C 0.08 0.98 4.03 -24.59 -0.10 0.88 16 27 H 0.08 0.77 8.00 -51.93 -0.42 0.36 16 28 O -0.56 -6.71 13.47 -35.23 -0.47 -7.19 16 29 H 0.06 0.28 6.57 -51.92 -0.34 -0.06 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.66 7.96 -51.92 -0.41 0.25 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.31 6.56 -51.93 -0.34 -0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.28 7.57 -51.93 -0.39 -0.11 16 37 H 0.40 2.87 7.95 -40.82 -0.32 2.54 16 38 H 0.08 1.00 8.03 -51.93 -0.42 0.59 16 39 H 0.07 0.89 7.50 -51.93 -0.39 0.50 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.05 0.83 7.96 -51.93 -0.41 0.41 16 42 H 0.37 7.81 5.76 -40.82 -0.24 7.58 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.11 2.00 6.71 -51.93 -0.35 1.65 16 45 H 0.06 1.02 7.53 -51.93 -0.39 0.62 16 46 H 0.38 3.14 9.12 45.56 0.42 3.56 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -34.48 369.17 -7.17 -41.65 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -6.50 Total: 14.27 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.45 Total: 8.74 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.75 Total: -55.28 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.31 Total: -29.64 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.48 -7.17 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191098019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.485 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds