Wall clock time and date at job start Fri Apr 10 2020 18:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 H 1.08994 * 109.47405 * 305.00047 * 3 2 1 5 5 C 1.52996 * 109.47068 * 65.00368 * 3 2 1 6 6 C 1.50702 * 109.47159 * 185.00014 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 10 10 H 1.09007 * 110.62723 * 36.65673 * 9 8 6 11 11 C 1.54322 * 110.70792 * 273.55398 * 9 8 6 12 12 N 1.47444 * 107.23033 * 219.33262 * 11 9 8 13 13 C 1.46903 * 110.99882 * 236.74082 * 12 11 9 14 14 C 1.50698 * 109.47127 * 169.99904 * 13 12 11 15 15 O 1.21291 * 120.00017 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00167 * 179.97438 * 14 13 12 17 17 C 1.37089 * 120.00210 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00196 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00003 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99887 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00030 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47202 * 89.99645 * 21 19 17 23 23 H 1.48497 * 109.47036 * 209.99900 * 21 19 17 24 24 H 1.48503 * 109.46905 * 329.99660 * 21 19 17 25 25 C 1.47847 * 108.57007 * 359.00729 * 12 11 9 26 26 C 1.54907 * 104.79721 * 24.09524 * 25 12 11 27 27 H 1.08999 * 110.98831 * 81.02022 * 26 25 12 28 28 O 1.42899 * 110.99551 * 204.84326 * 26 25 12 29 29 H 1.09009 * 109.47154 * 299.99844 * 1 2 3 30 30 H 1.09003 * 109.47483 * 59.99472 * 1 2 3 31 31 H 1.09001 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47154 * 240.00156 * 2 1 3 33 33 H 1.09003 * 109.47483 * 120.00527 * 2 1 3 34 34 H 1.09003 * 109.46851 * 300.00074 * 5 3 2 35 35 H 1.09002 * 109.47575 * 59.99595 * 5 3 2 36 36 H 1.09001 * 109.47551 * 179.97438 * 5 3 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 3 38 38 H 1.08997 * 109.88903 * 338.73064 * 11 9 8 39 39 H 1.08991 * 109.89317 * 99.76331 * 11 9 8 40 40 H 1.09001 * 109.47058 * 289.99670 * 13 12 11 41 41 H 1.09000 * 109.47315 * 49.99700 * 13 12 11 42 42 H 0.97005 * 119.99891 * 359.97438 * 16 14 13 43 43 H 0.96997 * 119.99515 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.37913 * 142.92572 * 25 12 11 45 45 H 1.09003 * 110.37385 * 265.16059 * 25 12 11 46 46 H 0.96704 * 113.98992 * 292.26463 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3950 -0.2047 8 7 4.2145 2.6118 -0.1509 9 6 5.6740 2.6138 -0.2774 10 1 6.0032 1.8124 -0.9389 11 6 6.3419 2.4867 1.1080 12 7 7.5185 3.3752 1.1088 13 6 8.7429 2.6272 1.4238 14 6 9.9442 3.5029 1.1769 15 8 9.7951 4.6387 0.7783 16 7 11.1843 3.0245 1.4001 17 6 12.2771 3.8214 1.1760 18 1 12.1443 4.8324 0.8203 19 6 13.5555 3.3282 1.4066 20 7 14.6031 4.0920 1.1914 21 14 13.7852 1.5792 2.0213 22 1 13.9084 0.6593 0.8620 23 1 15.0170 1.5026 2.8472 24 1 12.6128 1.1855 2.8432 25 6 7.6198 4.0235 -0.2161 26 6 6.1790 3.9905 -0.7839 27 1 5.5786 4.8019 -0.3727 28 8 6.1902 4.0376 -2.2121 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.5490 2.1251 1.3969 35 1 2.0699 1.5874 2.1492 36 1 1.9991 3.1540 1.3076 37 1 3.7322 3.4510 -0.0865 38 1 5.6437 2.7954 1.8860 39 1 6.6527 1.4557 1.2767 40 1 8.7239 2.3232 2.4704 41 1 8.8016 1.7426 0.7895 42 1 11.3036 2.1165 1.7200 43 1 15.4955 3.7476 1.3520 44 1 7.9623 5.0528 -0.1099 45 1 8.2967 3.4638 -0.8617 46 1 6.4986 4.8792 -2.5753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191098019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:31 Heat of formation + Delta-G solvation = -146.241881 kcal Electronic energy + Delta-G solvation = -26580.228437 eV Core-core repulsion = 22696.573981 eV Total energy + Delta-G solvation = -3883.654455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53459 -40.65711 -39.45192 -36.97699 -36.38547 -36.04582 -35.40191 -33.80147 -31.76050 -30.45715 -29.16360 -28.12161 -26.23742 -25.71052 -23.15073 -22.66797 -21.78664 -21.35765 -20.75119 -20.21438 -18.66396 -18.17520 -17.90828 -17.36646 -16.92651 -16.43935 -16.34278 -16.23598 -15.91075 -15.32450 -15.11922 -15.05990 -14.57704 -14.49893 -14.37696 -14.20188 -14.09545 -13.80383 -13.55786 -13.37048 -13.13175 -13.03748 -12.92362 -12.63750 -12.53101 -12.49440 -12.43699 -12.00449 -11.82333 -11.66517 -11.57476 -11.53644 -11.20204 -10.74614 -10.38250 -10.27824 -10.22029 -9.34792 -8.43908 -6.04358 1.28492 1.32588 1.41667 1.60964 1.88756 2.04348 2.20075 2.51666 2.90798 3.12032 3.22098 3.48429 3.64196 3.79329 3.90895 3.91725 4.01868 4.09796 4.19304 4.25863 4.31905 4.40828 4.44550 4.55357 4.59762 4.63582 4.76627 4.81000 4.86161 5.00371 5.05530 5.08420 5.15479 5.23464 5.37303 5.42191 5.49145 5.52702 5.73310 5.85407 5.95090 6.51039 6.55300 6.72359 6.84342 7.22616 7.34993 7.89670 8.73198 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.002608 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.624503 B =10735.139075 C =11363.194199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.103 4.103 4 H 0.119 0.881 5 C -0.143 4.143 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.703 5.703 9 C 0.138 3.862 10 H 0.073 0.927 11 C 0.039 3.961 12 N -0.511 5.511 13 C 0.044 3.956 14 C 0.450 3.550 15 O -0.602 6.602 16 N -0.590 5.590 17 C -0.326 4.326 18 H 0.060 0.940 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.960 3.040 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.233 1.233 25 C 0.034 3.966 26 C 0.098 3.902 27 H 0.105 0.895 28 O -0.571 6.571 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.388 0.612 43 H 0.279 0.721 44 H 0.085 0.915 45 H 0.028 0.972 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.472 -6.623 -0.172 30.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.124 4.124 4 H 0.136 0.864 5 C -0.200 4.200 6 C 0.301 3.699 7 O -0.465 6.465 8 N -0.355 5.355 9 C 0.031 3.969 10 H 0.091 0.909 11 C -0.089 4.089 12 N -0.237 5.237 13 C -0.088 4.088 14 C 0.238 3.762 15 O -0.486 6.486 16 N -0.231 5.231 17 C -0.455 4.455 18 H 0.078 0.922 19 C -0.212 4.212 20 N -0.571 5.571 21 Si 0.781 3.219 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.156 1.156 25 C -0.095 4.095 26 C 0.038 3.962 27 H 0.122 0.878 28 O -0.379 6.379 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.255 0.745 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.224 0.776 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.047 0.953 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -29.205 -6.785 -0.055 29.983 hybrid contribution 1.502 -0.411 -0.507 1.637 sum -27.704 -7.196 -0.563 28.628 Atomic orbital electron populations 1.21812 0.93444 1.02360 1.02916 1.21330 0.97010 0.94290 1.01855 1.21398 0.88702 0.99658 1.02631 0.86362 1.21857 1.03593 1.00545 0.94047 1.21456 0.91473 0.82849 0.74101 1.90694 1.71533 1.33099 1.51153 1.45779 1.05823 1.09624 1.74269 1.21857 0.81455 0.97346 0.96286 0.90861 1.23286 0.92356 0.96358 0.96932 1.63423 1.01793 1.28872 1.29583 1.22193 0.87751 0.94398 1.04419 1.20672 0.84544 0.88762 0.82233 1.90511 1.85877 1.21470 1.50731 1.42040 1.05285 1.14662 1.61147 1.18995 0.84857 0.97629 1.43993 0.92190 1.26069 0.93985 1.04053 0.97140 1.69791 0.99244 1.39163 1.48944 0.85421 0.79876 0.77108 0.79519 1.18438 1.19812 1.15640 1.23546 0.96075 1.01392 0.88490 1.23166 0.94752 0.96811 0.81462 0.87770 1.86443 1.89363 1.43124 1.18940 0.91081 0.91803 0.92479 0.93262 0.92743 0.89269 0.92987 0.90661 0.74461 0.88017 0.91673 0.85953 0.90954 0.77630 0.91110 0.89723 0.95328 0.74897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 71.98 0.70 -0.64 16 2 C -0.11 -1.56 4.75 30.59 0.15 -1.42 16 3 C -0.10 -1.27 2.72 -11.54 -0.03 -1.30 16 4 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 5 C -0.14 -1.13 8.85 71.98 0.64 -0.49 16 6 C 0.51 10.49 7.15 87.66 0.63 11.12 16 7 O -0.59 -17.65 15.64 -3.04 -0.05 -17.70 16 8 N -0.70 -12.21 5.03 -436.93 -2.20 -14.40 16 9 C 0.14 3.23 2.97 46.17 0.14 3.37 16 10 H 0.07 2.19 7.69 -2.38 -0.02 2.17 16 11 C 0.04 0.95 6.62 86.65 0.57 1.52 16 12 N -0.51 -15.57 5.21 -890.09 -4.64 -20.20 16 13 C 0.04 1.42 5.32 85.56 0.45 1.88 16 14 C 0.45 20.35 7.31 87.66 0.64 20.99 16 15 O -0.60 -31.96 13.13 -3.06 -0.04 -32.00 16 16 N -0.59 -28.08 5.09 -306.99 -1.56 -29.64 16 17 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 18 H 0.06 4.13 7.39 -2.91 -0.02 4.11 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 20 N -0.93 -56.02 13.96 21.66 0.30 -55.72 16 21 Si 0.96 39.33 27.74 68.60 1.90 41.23 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 25 C 0.03 1.07 4.68 86.77 0.41 1.47 16 26 C 0.10 2.24 4.03 31.98 0.13 2.37 16 27 H 0.10 1.82 8.00 -2.39 -0.02 1.80 16 28 O -0.57 -13.02 13.47 -148.98 -2.01 -15.03 16 29 H 0.07 0.46 6.57 -2.38 -0.02 0.45 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.92 7.96 -2.38 -0.02 0.90 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 0.41 6.56 -2.39 -0.02 0.40 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.39 7.57 -2.39 -0.02 0.38 16 37 H 0.42 4.48 7.95 -92.71 -0.74 3.74 16 38 H 0.10 2.12 8.03 -2.39 -0.02 2.10 16 39 H 0.06 1.61 7.50 -2.39 -0.02 1.60 16 40 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.07 2.12 7.96 -2.39 -0.02 2.10 16 42 H 0.39 15.57 5.76 -92.70 -0.53 15.04 16 43 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.08 3.14 6.71 -2.39 -0.02 3.13 16 45 H 0.03 1.05 7.53 -2.39 -0.02 1.03 16 46 H 0.40 6.13 9.12 -74.05 -0.68 5.45 16 Total: -1.00 -81.10 369.17 -3.54 -84.64 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: -0.99 Total: 38.40 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 5.74 Total: 20.43 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -8.09 Total: -119.96 kcal Atomic # 8 Polarization: -62.64 SS G_CDS: -2.09 Total: -64.73 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.23 kcal Total: -81.10 -3.54 -84.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191098019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.606 kcal (2) G-P(sol) polarization free energy of solvation -81.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds