Wall clock time and date at job start Fri Apr 10 2020 18:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47029 * 2 1 4 4 C 1.52989 * 109.47437 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47485 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99730 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00606 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00377 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.27148 * 35.63434 * 8 7 5 10 10 C 1.53994 * 110.30732 * 273.54790 * 8 7 5 11 11 N 1.47903 * 107.05424 * 242.30604 * 10 8 7 12 12 C 1.46904 * 111.00038 * 214.15460 * 11 10 8 13 13 C 1.50700 * 109.47192 * 170.00163 * 12 11 10 14 14 O 1.21293 * 119.99810 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.28082 * 13 12 11 16 16 C 1.37102 * 119.99634 * 179.72687 * 15 13 12 17 17 H 1.08002 * 119.99868 * 359.97438 * 16 15 13 18 18 C 1.38945 * 119.99860 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99894 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00219 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47042 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47263 * 120.00217 * 20 18 16 23 23 H 1.48501 * 109.47172 * 240.00593 * 20 18 16 24 24 C 1.48527 * 105.82321 * 334.67235 * 11 10 8 25 25 C 1.54594 * 110.30922 * 157.82998 * 8 7 5 26 26 H 1.09002 * 110.72384 * 22.51774 * 25 8 7 27 27 O 1.42902 * 110.72751 * 259.41165 * 25 8 7 28 28 H 1.08993 * 109.47351 * 60.00621 * 1 2 3 29 29 H 1.09010 * 109.46574 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47291 * 299.99906 * 1 2 3 31 31 H 1.09002 * 109.47200 * 240.00023 * 2 1 3 32 32 H 1.09002 * 109.47575 * 119.99470 * 2 1 3 33 33 H 1.09003 * 109.47232 * 59.99426 * 3 2 1 34 34 H 1.08999 * 109.46850 * 300.00512 * 3 2 1 35 35 H 1.09004 * 109.47261 * 60.00349 * 4 3 2 36 36 H 1.08999 * 109.47604 * 300.00155 * 4 3 2 37 37 H 0.97003 * 119.99741 * 0.02562 * 7 5 4 38 38 H 1.09001 * 109.91602 * 122.95669 * 10 8 7 39 39 H 1.08999 * 110.08310 * 1.75214 * 10 8 7 40 40 H 1.09009 * 109.46542 * 50.00194 * 12 11 10 41 41 H 1.08998 * 109.47050 * 290.00728 * 12 11 10 42 42 H 0.97001 * 120.00485 * 359.71840 * 15 13 12 43 43 H 0.97004 * 119.99542 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.66931 * 157.64305 * 24 11 10 45 45 H 1.09001 * 110.66633 * 280.76824 * 24 11 10 46 46 H 0.96692 * 114.00290 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2840 3.7853 -0.0004 7 7 5.3972 3.1099 -0.0001 8 6 5.8855 4.4911 -0.0013 9 1 5.2278 5.1247 0.5938 10 6 5.9794 5.0235 -1.4432 11 7 7.4028 5.3335 -1.6992 12 6 7.5370 6.4985 -2.5840 13 6 8.9791 6.9340 -2.6259 14 8 9.8131 6.3328 -1.9824 15 7 9.3411 7.9948 -3.3744 16 6 10.6522 8.3944 -3.4081 17 1 11.3947 7.8595 -2.8346 18 6 11.0255 9.4877 -4.1801 19 7 10.1219 10.1389 -4.8775 20 14 12.8116 10.0327 -4.2255 21 1 13.6236 9.1405 -3.3594 22 1 13.3159 9.9606 -5.6204 23 1 12.9155 11.4298 -3.7332 24 6 8.0042 5.6038 -0.3683 25 6 7.3301 4.5500 0.5459 26 1 7.8205 3.5818 0.4451 27 8 7.3376 4.9790 1.9090 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 3.9336 0.9288 -0.8892 36 1 3.9329 0.9290 0.8908 37 1 6.0276 2.3726 -0.0001 38 1 5.3784 5.9271 -1.5453 39 1 5.6323 4.2656 -2.1454 40 1 6.9217 7.3149 -2.2055 41 1 7.2086 6.2316 -3.5885 42 1 8.6742 8.4754 -3.8893 43 1 10.3826 10.9023 -5.4162 44 1 9.0836 5.4547 -0.3964 45 1 7.7628 6.6131 -0.0349 46 1 8.2204 5.0324 2.2997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191127222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:37 Heat of formation + Delta-G solvation = -126.026075 kcal Electronic energy + Delta-G solvation = -25996.283276 eV Core-core repulsion = 22113.505444 eV Total energy + Delta-G solvation = -3882.777832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33090 -39.10237 -37.83614 -35.82557 -35.61583 -34.46758 -33.84063 -31.39359 -31.12329 -29.86336 -27.99166 -26.55265 -24.89129 -24.08094 -21.72520 -21.46403 -20.74384 -20.32283 -19.29587 -17.96030 -17.61604 -17.12180 -16.40787 -16.21496 -15.96334 -15.17235 -14.82009 -14.80219 -14.71487 -14.21929 -14.05569 -13.85924 -13.77381 -13.33500 -13.09969 -13.00484 -12.63290 -12.49110 -12.42571 -12.11093 -11.72557 -11.61746 -11.57746 -11.51685 -11.35139 -11.30596 -11.04622 -10.88858 -10.62881 -10.36588 -10.27508 -10.18669 -9.84287 -9.54385 -9.25246 -8.46276 -8.08822 -7.97118 -6.46564 -3.87796 2.51085 2.96604 3.12872 3.23993 3.30552 3.79826 3.83891 4.11242 4.35407 4.41370 4.53164 4.57527 4.63477 4.85358 4.93735 4.98055 5.00857 5.11763 5.16794 5.20887 5.34499 5.35895 5.42595 5.50400 5.51367 5.61909 5.69607 5.78374 5.82798 5.83754 5.87780 5.94584 6.07293 6.08397 6.19882 6.36091 6.48172 7.02645 7.14610 7.35038 7.50670 7.56390 8.00486 8.09396 8.55379 9.12357 9.47999 9.98742 10.70983 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.002192 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.707962 B =12772.401495 C =13329.367002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.141 4.141 5 C 0.512 3.488 6 O -0.540 6.540 7 N -0.719 5.719 8 C 0.143 3.857 9 H 0.103 0.897 10 C 0.027 3.973 11 N -0.491 5.491 12 C 0.035 3.965 13 C 0.442 3.558 14 O -0.584 6.584 15 N -0.559 5.559 16 C -0.300 4.300 17 H 0.104 0.896 18 C 0.023 3.977 19 N -0.899 5.899 20 Si 0.931 3.069 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.010 3.990 25 C 0.091 3.909 26 H 0.075 0.925 27 O -0.563 6.563 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.393 0.607 43 H 0.272 0.728 44 H 0.125 0.875 45 H 0.049 0.951 46 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 -17.091 9.244 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.181 4.181 5 C 0.299 3.701 6 O -0.417 6.417 7 N -0.371 5.371 8 C 0.037 3.963 9 H 0.121 0.879 10 C -0.103 4.103 11 N -0.216 5.216 12 C -0.096 4.096 13 C 0.227 3.773 14 O -0.469 6.469 15 N -0.195 5.195 16 C -0.430 4.430 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.540 5.540 20 Si 0.758 3.242 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.118 4.118 25 C 0.031 3.969 26 H 0.093 0.907 27 O -0.368 6.368 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.236 0.764 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.143 0.857 45 H 0.067 0.933 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -13.589 -17.052 9.187 23.660 hybrid contribution 0.966 1.068 -0.131 1.446 sum -12.622 -15.984 9.056 22.289 Atomic orbital electron populations 1.21761 0.95716 1.01499 1.02065 1.21551 0.96153 0.96601 1.01964 1.21378 0.92675 0.96587 1.03701 1.21705 0.98201 0.93729 1.04422 1.20785 0.82051 0.91847 0.75449 1.90714 1.55230 1.46582 1.49155 1.46079 1.07244 1.08276 1.75534 1.21684 0.94946 0.83580 0.96056 0.87923 1.23352 0.90485 1.00982 0.95436 1.64585 1.10508 1.35457 1.11046 1.22137 0.96949 0.91832 0.98711 1.19662 0.89251 0.83525 0.84816 1.90413 1.52579 1.56858 1.47060 1.41862 1.10107 1.26279 1.41289 1.19752 0.84895 1.11693 1.26654 0.87781 1.25288 1.00033 0.96405 0.96203 1.69625 1.33919 1.20888 1.29599 0.85784 0.81918 0.78449 0.78089 1.19210 1.20707 1.20736 1.24130 1.03349 0.96935 0.87379 1.23019 0.94463 0.97701 0.81759 0.90726 1.86459 1.34382 1.90674 1.25291 0.92618 0.92817 0.92678 0.91953 0.92030 0.91230 0.91133 0.88800 0.88944 0.76395 0.92750 0.89755 0.93026 0.88953 0.77381 0.91831 0.85720 0.93257 0.76811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.77 5.93 -26.73 -0.16 -0.92 16 3 C -0.11 -0.85 4.50 -26.73 -0.12 -0.97 16 4 C -0.14 -1.03 5.70 -27.89 -0.16 -1.19 16 5 C 0.51 5.76 7.82 -10.99 -0.09 5.67 16 6 O -0.54 -8.31 15.68 5.55 0.09 -8.23 16 7 N -0.72 -7.49 5.03 -52.49 -0.26 -7.75 16 8 C 0.14 1.86 3.06 -66.57 -0.20 1.66 16 9 H 0.10 1.56 7.58 -51.93 -0.39 1.17 16 10 C 0.03 0.38 6.48 -2.75 -0.02 0.36 16 11 N -0.49 -8.10 5.26 -231.89 -1.22 -9.32 16 12 C 0.04 0.64 5.52 -4.97 -0.03 0.61 16 13 C 0.44 10.18 7.49 -10.98 -0.08 10.10 16 14 O -0.58 -14.90 13.10 5.55 0.07 -14.82 16 15 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 16 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 20 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.01 0.16 5.03 -1.90 -0.01 0.15 16 25 C 0.09 1.15 4.14 -24.87 -0.10 1.05 16 26 H 0.07 0.83 7.74 -51.93 -0.40 0.43 16 27 O -0.56 -6.92 13.41 -35.23 -0.47 -7.39 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.23 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 3.11 8.35 -40.82 -0.34 2.77 16 38 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 39 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.05 0.87 7.81 -51.92 -0.41 0.47 16 41 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.13 2.32 5.97 -51.93 -0.31 2.01 16 45 H 0.05 0.85 8.02 -51.93 -0.42 0.44 16 46 H 0.38 3.23 9.12 45.56 0.42 3.64 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -33.02 377.24 -8.02 -41.04 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -6.71 Total: 14.56 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.84 Total: 8.09 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.82 Total: -54.67 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.31 Total: -30.44 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.02 -8.02 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191127222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.984 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds