Wall clock time and date at job start Fri Apr 10 2020 18:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47029 * 2 1 4 4 C 1.52989 * 109.47437 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47485 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99730 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00606 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00377 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.27148 * 35.63434 * 8 7 5 10 10 C 1.53994 * 110.30732 * 273.54790 * 8 7 5 11 11 N 1.47903 * 107.05424 * 242.30604 * 10 8 7 12 12 C 1.46904 * 111.00038 * 214.15460 * 11 10 8 13 13 C 1.50700 * 109.47192 * 170.00163 * 12 11 10 14 14 O 1.21293 * 119.99810 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.28082 * 13 12 11 16 16 C 1.37102 * 119.99634 * 179.72687 * 15 13 12 17 17 H 1.08002 * 119.99868 * 359.97438 * 16 15 13 18 18 C 1.38945 * 119.99860 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99894 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00219 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47042 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47263 * 120.00217 * 20 18 16 23 23 H 1.48501 * 109.47172 * 240.00593 * 20 18 16 24 24 C 1.48527 * 105.82321 * 334.67235 * 11 10 8 25 25 C 1.54594 * 110.30922 * 157.82998 * 8 7 5 26 26 H 1.09002 * 110.72384 * 22.51774 * 25 8 7 27 27 O 1.42902 * 110.72751 * 259.41165 * 25 8 7 28 28 H 1.08993 * 109.47351 * 60.00621 * 1 2 3 29 29 H 1.09010 * 109.46574 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47291 * 299.99906 * 1 2 3 31 31 H 1.09002 * 109.47200 * 240.00023 * 2 1 3 32 32 H 1.09002 * 109.47575 * 119.99470 * 2 1 3 33 33 H 1.09003 * 109.47232 * 59.99426 * 3 2 1 34 34 H 1.08999 * 109.46850 * 300.00512 * 3 2 1 35 35 H 1.09004 * 109.47261 * 60.00349 * 4 3 2 36 36 H 1.08999 * 109.47604 * 300.00155 * 4 3 2 37 37 H 0.97003 * 119.99741 * 0.02562 * 7 5 4 38 38 H 1.09001 * 109.91602 * 122.95669 * 10 8 7 39 39 H 1.08999 * 110.08310 * 1.75214 * 10 8 7 40 40 H 1.09009 * 109.46542 * 50.00194 * 12 11 10 41 41 H 1.08998 * 109.47050 * 290.00728 * 12 11 10 42 42 H 0.97001 * 120.00485 * 359.71840 * 15 13 12 43 43 H 0.97004 * 119.99542 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.66931 * 157.64305 * 24 11 10 45 45 H 1.09001 * 110.66633 * 280.76824 * 24 11 10 46 46 H 0.96692 * 114.00290 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2840 3.7853 -0.0004 7 7 5.3972 3.1099 -0.0001 8 6 5.8855 4.4911 -0.0013 9 1 5.2278 5.1247 0.5938 10 6 5.9794 5.0235 -1.4432 11 7 7.4028 5.3335 -1.6992 12 6 7.5370 6.4985 -2.5840 13 6 8.9791 6.9340 -2.6259 14 8 9.8131 6.3328 -1.9824 15 7 9.3411 7.9948 -3.3744 16 6 10.6522 8.3944 -3.4081 17 1 11.3947 7.8595 -2.8346 18 6 11.0255 9.4877 -4.1801 19 7 10.1219 10.1389 -4.8775 20 14 12.8116 10.0327 -4.2255 21 1 13.6236 9.1405 -3.3594 22 1 13.3159 9.9606 -5.6204 23 1 12.9155 11.4298 -3.7332 24 6 8.0042 5.6038 -0.3683 25 6 7.3301 4.5500 0.5459 26 1 7.8205 3.5818 0.4451 27 8 7.3376 4.9790 1.9090 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6765 1.9564 -0.8899 35 1 3.9336 0.9288 -0.8892 36 1 3.9329 0.9290 0.8908 37 1 6.0276 2.3726 -0.0001 38 1 5.3784 5.9271 -1.5453 39 1 5.6323 4.2656 -2.1454 40 1 6.9217 7.3149 -2.2055 41 1 7.2086 6.2316 -3.5885 42 1 8.6742 8.4754 -3.8893 43 1 10.3826 10.9023 -5.4162 44 1 9.0836 5.4547 -0.3964 45 1 7.7628 6.6131 -0.0349 46 1 8.2204 5.0324 2.2997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191127222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:36 Heat of formation + Delta-G solvation = -154.222389 kcal Electronic energy + Delta-G solvation = -25997.505960 eV Core-core repulsion = 22113.505444 eV Total energy + Delta-G solvation = -3884.000516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41218 -40.44586 -39.32885 -36.94924 -36.28294 -35.96927 -35.32362 -33.33899 -32.01350 -30.91038 -29.15533 -28.06201 -26.19797 -25.24696 -22.89464 -22.22674 -21.67637 -21.29637 -21.04375 -19.89310 -18.69975 -18.01940 -17.82225 -17.29440 -16.91989 -16.67113 -16.33271 -16.17494 -15.72696 -15.64743 -15.32092 -15.04859 -14.61370 -14.53317 -14.32369 -14.01472 -13.83702 -13.61483 -13.52509 -13.37119 -13.21099 -13.04520 -12.88530 -12.62213 -12.41663 -12.16643 -12.11956 -12.06685 -11.86052 -11.77091 -11.49127 -11.42000 -11.20835 -10.80821 -10.32650 -10.11763 -10.02835 -9.47967 -8.48336 -5.97287 1.35871 1.41774 1.55809 1.64746 1.99898 2.10207 2.26546 2.62239 3.08443 3.18239 3.28038 3.56215 3.70346 3.88230 3.94983 3.99758 4.09710 4.18106 4.25087 4.32147 4.38343 4.40925 4.47673 4.50604 4.60637 4.67998 4.73646 4.80435 4.85124 4.97257 5.03969 5.09292 5.13939 5.30651 5.39972 5.41848 5.43263 5.53972 5.69426 5.78414 6.01653 6.54717 6.57007 6.74584 7.10163 7.26455 7.52165 8.06446 8.69278 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.002192 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.707962 B =12772.401495 C =13329.367002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.105 4.105 4 C -0.131 4.131 5 C 0.508 3.492 6 O -0.587 6.587 7 N -0.708 5.708 8 C 0.148 3.852 9 H 0.080 0.920 10 C 0.032 3.968 11 N -0.496 5.496 12 C 0.044 3.956 13 C 0.442 3.558 14 O -0.610 6.610 15 N -0.572 5.572 16 C -0.331 4.331 17 H 0.083 0.917 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.995 3.005 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.273 1.273 24 C 0.011 3.989 25 C 0.108 3.892 26 H 0.099 0.901 27 O -0.572 6.572 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.418 0.582 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.099 0.901 45 H 0.031 0.969 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.201 -18.904 9.433 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.143 4.143 4 C -0.171 4.171 5 C 0.296 3.704 6 O -0.467 6.467 7 N -0.360 5.360 8 C 0.042 3.958 9 H 0.099 0.901 10 C -0.097 4.097 11 N -0.222 5.222 12 C -0.087 4.087 13 C 0.229 3.771 14 O -0.496 6.496 15 N -0.208 5.208 16 C -0.461 4.461 17 H 0.101 0.899 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.819 3.181 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.198 1.198 24 C -0.117 4.117 25 C 0.047 3.953 26 H 0.116 0.884 27 O -0.380 6.380 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.117 0.883 45 H 0.049 0.951 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -13.569 -18.899 9.385 25.087 hybrid contribution 0.923 1.607 -0.140 1.858 sum -12.646 -17.292 9.245 23.333 Atomic orbital electron populations 1.21792 0.96027 1.02016 1.01538 1.21521 0.95899 0.95224 1.03064 1.21347 0.93426 0.97579 1.01939 1.21748 0.97360 0.91126 1.06833 1.21546 0.81672 0.93053 0.74080 1.90701 1.56369 1.48358 1.51305 1.45957 1.07548 1.07610 1.74933 1.21417 0.94680 0.84810 0.94906 0.90140 1.23352 0.88720 1.01159 0.96477 1.64580 1.12166 1.34457 1.10994 1.22047 0.93285 0.92969 1.00409 1.20527 0.91165 0.82303 0.83117 1.90408 1.54187 1.57393 1.47652 1.41933 1.09539 1.27179 1.42185 1.19731 0.85764 1.12768 1.27813 0.89866 1.26082 1.04064 0.95908 0.95371 1.69691 1.35560 1.21170 1.29795 0.84837 0.76941 0.78055 0.78304 1.19506 1.19701 1.19785 1.23987 1.02135 0.97294 0.88300 1.22842 0.93797 0.97322 0.81289 0.88357 1.86434 1.36087 1.90678 1.24782 0.93244 0.91744 0.93208 0.90851 0.90806 0.93055 0.93010 0.86268 0.86314 0.74444 0.93165 0.88743 0.91738 0.87015 0.77110 0.91317 0.88319 0.95061 0.74849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.20 5.93 30.60 0.18 -1.02 16 3 C -0.10 -1.55 4.50 30.59 0.14 -1.41 16 4 C -0.13 -1.56 5.70 29.84 0.17 -1.39 16 5 C 0.51 10.61 7.82 87.66 0.69 11.30 16 6 O -0.59 -18.00 15.68 -3.05 -0.05 -18.05 16 7 N -0.71 -13.18 5.03 -438.37 -2.20 -15.38 16 8 C 0.15 3.69 3.06 45.87 0.14 3.84 16 9 H 0.08 2.43 7.58 -2.39 -0.02 2.41 16 10 C 0.03 0.86 6.48 86.45 0.56 1.42 16 11 N -0.50 -16.01 5.26 -887.56 -4.67 -20.68 16 12 C 0.04 1.58 5.52 85.56 0.47 2.05 16 13 C 0.44 20.65 7.49 87.66 0.66 21.30 16 14 O -0.61 -31.82 13.10 -3.07 -0.04 -31.86 16 15 N -0.57 -29.13 5.29 -306.98 -1.62 -30.76 16 16 C -0.33 -18.54 9.68 84.04 0.81 -17.72 16 17 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 18 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 19 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 20 Si 0.99 42.48 29.55 68.60 2.03 44.50 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 C 0.01 0.37 5.03 86.65 0.44 0.80 16 25 C 0.11 2.59 4.14 31.80 0.13 2.72 16 26 H 0.10 1.93 7.74 -2.39 -0.02 1.91 16 27 O -0.57 -13.29 13.41 -148.98 -2.00 -15.29 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.92 16 34 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 35 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.42 5.08 8.35 -92.71 -0.77 4.31 16 38 H 0.05 1.41 7.57 -2.39 -0.02 1.39 16 39 H 0.09 2.38 7.93 -2.39 -0.02 2.36 16 40 H 0.06 2.15 7.81 -2.38 -0.02 2.13 16 41 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 42 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 43 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 44 H 0.10 3.74 5.97 -2.39 -0.01 3.73 16 45 H 0.03 1.10 8.02 -2.39 -0.02 1.08 16 46 H 0.40 6.17 9.12 -74.06 -0.68 5.49 16 Total: -1.00 -72.77 377.24 -3.88 -76.65 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: -1.17 Total: 39.71 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 5.57 Total: 20.58 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -8.21 Total: -116.24 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -2.09 Total: -65.20 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -72.77 -3.88 -76.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191127222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.575 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds