Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99715 * 2 1 4 4 H 1.08992 * 109.47543 * 29.99622 * 3 2 1 5 5 C 1.53007 * 109.46892 * 269.99165 * 3 2 1 6 6 C 1.50703 * 109.46892 * 150.00008 * 3 2 1 7 7 O 1.21277 * 120.00091 * 8.45163 * 6 3 2 8 8 N 1.34785 * 119.99554 * 188.45439 * 6 3 2 9 9 C 1.44675 * 118.54383 * 184.52844 * 8 6 3 10 10 C 1.54949 * 109.52422 * 269.05522 * 9 8 6 11 11 C 1.47539 * 109.73301 * 290.52544 * 10 9 8 12 12 N 1.46262 * 114.37819 * 62.21706 * 11 10 9 13 13 C 1.46897 * 111.00334 * 148.55596 * 12 11 10 14 14 C 1.50701 * 109.47273 * 64.47347 * 13 12 11 15 15 O 1.21296 * 119.99840 * 356.88783 * 14 13 12 16 16 N 1.34775 * 119.99996 * 176.61012 * 14 13 12 17 17 C 1.37098 * 120.00002 * 180.27864 * 16 14 13 18 18 H 1.08001 * 119.99950 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99870 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00271 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99744 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47235 * 60.00341 * 21 19 17 23 23 H 1.48498 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47144 * 300.00058 * 21 19 17 25 25 C 1.44760 * 110.63981 * 272.25449 * 12 11 10 26 26 C 1.47774 * 118.54835 * 4.50748 * 8 6 3 27 27 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47162 * 300.00112 * 1 2 3 29 29 H 1.08997 * 109.46723 * 60.00453 * 1 2 3 30 30 H 1.09006 * 109.46483 * 64.81729 * 5 3 2 31 31 H 1.08995 * 109.47073 * 184.80867 * 5 3 2 32 32 H 1.09000 * 109.47426 * 304.81480 * 5 3 2 33 33 H 1.08993 * 109.46701 * 149.03884 * 9 8 6 34 34 H 1.09004 * 109.45291 * 29.06201 * 9 8 6 35 35 H 1.09001 * 109.42787 * 170.44135 * 10 9 8 36 36 H 1.09003 * 109.42757 * 50.60473 * 10 9 8 37 37 H 1.09008 * 108.50333 * 300.95254 * 11 10 9 38 38 H 1.09004 * 108.38254 * 183.39704 * 11 10 9 39 39 H 1.09007 * 109.46807 * 304.47536 * 13 12 11 40 40 H 1.08995 * 109.47207 * 184.47922 * 13 12 11 41 41 H 0.96998 * 120.00195 * 0.27602 * 16 14 13 42 42 H 0.96999 * 120.00178 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.43269 * 214.22457 * 25 12 11 44 44 H 1.08996 * 109.43892 * 334.08978 * 25 12 11 45 45 H 1.09007 * 109.06033 * 258.66762 * 26 8 6 46 46 H 1.09001 * 109.06782 * 17.59724 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2178 1.7713 -1.4426 6 6 3.3386 1.2639 0.7104 7 8 3.8192 0.1990 1.0357 8 7 3.9924 2.4103 0.9843 9 6 5.3096 2.3301 1.5774 10 6 5.1842 2.3486 3.1217 11 6 4.7424 3.6831 3.5697 12 7 3.4241 4.0799 3.0759 13 6 2.7383 4.9463 4.0438 14 6 3.5041 6.2354 4.1949 15 8 4.5507 6.3921 3.6021 16 7 3.0233 7.2164 4.9842 17 6 3.7171 8.3913 5.1171 18 1 4.6487 8.5310 4.5890 19 6 3.2211 9.4028 5.9305 20 7 2.0873 9.2331 6.5727 21 14 4.1668 11.0034 6.1121 22 1 4.3074 11.6490 4.7822 23 1 3.4315 11.9116 7.0285 24 1 5.5137 10.7219 6.6706 25 6 3.5361 4.7289 1.7869 26 6 3.3324 3.6933 0.6651 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.2497 1.8834 -1.9309 31 1 2.7383 2.7289 -1.4438 32 1 2.8129 1.0334 -1.9806 33 1 5.9071 3.1814 1.2514 34 1 5.7935 1.4052 1.2633 35 1 6.1522 2.1187 3.5668 36 1 4.4553 1.6012 3.4351 37 1 5.4731 4.4197 3.2353 38 1 4.7201 3.6898 4.6595 39 1 2.6831 4.4413 5.0083 40 1 1.7307 5.1618 3.6884 41 1 2.1863 7.0911 5.4582 42 1 1.7412 9.9391 7.1408 43 1 2.7765 5.5064 1.7051 44 1 4.5249 5.1774 1.6913 45 1 3.7486 4.0866 -0.2625 46 1 2.2647 3.5205 0.5296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195036114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -95.640084 kcal Electronic energy + Delta-G solvation = -27587.292216 eV Core-core repulsion = 23705.832019 eV Total energy + Delta-G solvation = -3881.460197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54156 -39.18709 -37.86602 -36.90521 -34.87626 -33.87042 -33.19670 -31.38711 -31.35347 -29.20080 -27.01581 -26.68648 -25.75757 -24.11618 -24.00079 -21.78148 -20.67723 -19.30632 -19.02380 -17.94915 -17.52150 -16.97769 -16.24398 -15.94263 -15.50652 -15.36842 -15.13393 -14.91472 -14.53773 -14.44544 -13.97870 -13.78737 -13.64742 -13.25473 -13.09768 -13.04654 -12.73867 -12.46625 -12.28744 -11.99135 -11.97324 -11.65113 -11.56869 -11.40087 -11.19983 -10.99951 -10.91818 -10.65858 -10.52395 -10.37860 -10.31204 -10.07486 -9.58768 -9.43011 -9.17887 -8.51924 -8.07896 -7.65678 -6.51727 -3.93423 2.65533 2.81782 3.11454 3.18965 3.22641 3.72508 3.76728 4.08213 4.18751 4.41386 4.66030 4.80069 4.89966 5.01703 5.07603 5.08611 5.14582 5.17583 5.20631 5.27230 5.30244 5.41400 5.47063 5.49644 5.60967 5.69002 5.79004 5.85630 5.87006 5.95282 6.02954 6.06625 6.14113 6.30307 6.37576 6.57898 6.69376 6.89494 7.26332 7.41649 7.44378 7.45019 7.93753 8.27057 8.48462 9.06181 9.42288 9.92131 10.64811 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.002964 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.426514 B = 9444.038130 C = 9869.812086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.068 3.932 4 H 0.088 0.912 5 C -0.173 4.173 6 C 0.515 3.485 7 O -0.528 6.528 8 N -0.588 5.588 9 C 0.121 3.879 10 C -0.128 4.128 11 C 0.055 3.945 12 N -0.508 5.508 13 C 0.044 3.956 14 C 0.405 3.595 15 O -0.597 6.597 16 N -0.556 5.556 17 C -0.304 4.304 18 H 0.102 0.898 19 C 0.025 3.975 20 N -0.898 5.898 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.046 3.954 26 C 0.111 3.889 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -12.021 -11.984 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.007 3.993 4 H 0.106 0.894 5 C -0.231 4.231 6 C 0.302 3.698 7 O -0.404 6.404 8 N -0.321 5.321 9 C -0.002 4.002 10 C -0.167 4.167 11 C -0.073 4.073 12 N -0.230 5.230 13 C -0.087 4.087 14 C 0.190 3.810 15 O -0.484 6.484 16 N -0.191 5.191 17 C -0.433 4.433 18 H 0.120 0.880 19 C -0.177 4.177 20 N -0.539 5.539 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.084 4.084 26 C -0.013 4.013 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.226 0.774 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.477 -12.929 -12.118 17.892 hybrid contribution -0.006 1.969 0.722 2.098 sum -2.484 -10.960 -11.396 16.005 Atomic orbital electron populations 1.22867 0.80795 1.03061 1.00071 1.88032 1.19515 1.25463 1.94955 1.21988 0.94084 0.86556 0.96649 0.89400 1.22292 1.03226 1.02470 0.95084 1.20302 0.86256 0.84031 0.79247 1.90681 1.67584 1.29573 1.52522 1.47500 1.17650 1.05543 1.61435 1.21434 0.83187 1.02386 0.93198 1.21356 1.01427 0.98307 0.95653 1.20977 0.90485 0.96357 0.99504 1.61288 1.20650 1.38885 1.02216 1.22226 0.97836 0.91512 0.97174 1.21034 0.88487 0.86724 0.84775 1.90482 1.25220 1.81763 1.50918 1.42011 1.22785 1.13757 1.40567 1.19653 1.06180 0.91061 1.26448 0.88039 1.25285 0.96335 0.99900 0.96222 1.69595 1.19426 1.35021 1.29826 0.85926 0.79272 0.80768 0.78319 1.19866 1.20877 1.19879 1.22309 1.03425 0.94007 0.88652 1.22363 0.97419 0.83877 0.97605 0.89317 0.93708 0.93963 0.91382 0.90555 0.91164 0.90817 0.90197 0.90744 0.91308 0.91989 0.92400 0.89378 0.89390 0.77383 0.91659 0.90514 0.91261 0.91522 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.64 9.89 -55.00 -0.54 -5.18 16 3 C 0.07 0.77 2.29 -27.88 -0.06 0.71 16 4 H 0.09 0.86 6.37 -51.93 -0.33 0.53 16 5 C -0.17 -1.49 9.24 37.16 0.34 -1.15 16 6 C 0.52 7.36 6.98 -10.98 -0.08 7.28 16 7 O -0.53 -9.59 15.97 -14.21 -0.23 -9.82 16 8 N -0.59 -7.50 2.54 -172.22 -0.44 -7.93 16 9 C 0.12 1.57 5.41 -3.99 -0.02 1.54 16 10 C -0.13 -1.76 6.02 -28.34 -0.17 -1.93 16 11 C 0.05 0.86 4.03 -6.81 -0.03 0.83 16 12 N -0.51 -7.80 4.37 -241.05 -1.05 -8.85 16 13 C 0.04 0.73 5.49 -4.98 -0.03 0.70 16 14 C 0.40 8.73 7.09 -10.99 -0.08 8.65 16 15 O -0.60 -14.40 12.12 5.54 0.07 -14.34 16 16 N -0.56 -13.33 5.29 -10.96 -0.06 -13.39 16 17 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 18 H 0.10 2.85 7.16 -52.49 -0.38 2.47 16 19 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -23.71 13.05 55.50 0.72 -22.98 16 21 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 C 0.05 0.65 4.23 -4.44 -0.02 0.63 16 26 C 0.11 1.21 4.97 -2.81 -0.01 1.20 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.04 0.28 7.98 -51.93 -0.41 -0.13 16 30 H 0.07 0.47 7.98 -51.93 -0.41 0.05 16 31 H 0.08 0.57 5.89 -51.93 -0.31 0.27 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.08 1.06 7.31 -51.93 -0.38 0.68 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.11 5.87 -51.92 -0.30 0.81 16 38 H 0.06 0.96 7.54 -51.93 -0.39 0.57 16 39 H 0.09 1.38 7.91 -51.92 -0.41 0.97 16 40 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 41 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 42 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.08 1.12 7.46 -51.93 -0.39 0.73 16 44 H 0.07 1.15 6.17 -51.93 -0.32 0.83 16 45 H 0.07 0.61 7.57 -51.92 -0.39 0.22 16 46 H 0.08 0.73 5.37 -51.93 -0.28 0.45 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -32.26 359.45 -7.55 -39.81 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.12 Total: 9.77 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 0.70 Total: 12.10 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.82 Total: -53.16 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.70 Total: -29.34 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.26 -7.55 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195036114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.827 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds