Wall clock time and date at job start Fri Apr 10 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99715 * 2 1 4 4 H 1.08992 * 109.47543 * 29.99622 * 3 2 1 5 5 C 1.53007 * 109.46892 * 269.99165 * 3 2 1 6 6 C 1.50703 * 109.46892 * 150.00008 * 3 2 1 7 7 O 1.21277 * 120.00091 * 8.45163 * 6 3 2 8 8 N 1.34785 * 119.99554 * 188.45439 * 6 3 2 9 9 C 1.44675 * 118.54383 * 184.52844 * 8 6 3 10 10 C 1.54949 * 109.52422 * 269.05522 * 9 8 6 11 11 C 1.47539 * 109.73301 * 290.52544 * 10 9 8 12 12 N 1.46262 * 114.37819 * 62.21706 * 11 10 9 13 13 C 1.46897 * 111.00334 * 148.55596 * 12 11 10 14 14 C 1.50701 * 109.47273 * 64.47347 * 13 12 11 15 15 O 1.21296 * 119.99840 * 356.88783 * 14 13 12 16 16 N 1.34775 * 119.99996 * 176.61012 * 14 13 12 17 17 C 1.37098 * 120.00002 * 180.27864 * 16 14 13 18 18 H 1.08001 * 119.99950 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99870 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00271 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99744 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47235 * 60.00341 * 21 19 17 23 23 H 1.48498 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47144 * 300.00058 * 21 19 17 25 25 C 1.44760 * 110.63981 * 272.25449 * 12 11 10 26 26 C 1.47774 * 118.54835 * 4.50748 * 8 6 3 27 27 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47162 * 300.00112 * 1 2 3 29 29 H 1.08997 * 109.46723 * 60.00453 * 1 2 3 30 30 H 1.09006 * 109.46483 * 64.81729 * 5 3 2 31 31 H 1.08995 * 109.47073 * 184.80867 * 5 3 2 32 32 H 1.09000 * 109.47426 * 304.81480 * 5 3 2 33 33 H 1.08993 * 109.46701 * 149.03884 * 9 8 6 34 34 H 1.09004 * 109.45291 * 29.06201 * 9 8 6 35 35 H 1.09001 * 109.42787 * 170.44135 * 10 9 8 36 36 H 1.09003 * 109.42757 * 50.60473 * 10 9 8 37 37 H 1.09008 * 108.50333 * 300.95254 * 11 10 9 38 38 H 1.09004 * 108.38254 * 183.39704 * 11 10 9 39 39 H 1.09007 * 109.46807 * 304.47536 * 13 12 11 40 40 H 1.08995 * 109.47207 * 184.47922 * 13 12 11 41 41 H 0.96998 * 120.00195 * 0.27602 * 16 14 13 42 42 H 0.96999 * 120.00178 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.43269 * 214.22457 * 25 12 11 44 44 H 1.08996 * 109.43892 * 334.08978 * 25 12 11 45 45 H 1.09007 * 109.06033 * 258.66762 * 26 8 6 46 46 H 1.09001 * 109.06782 * 17.59724 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2178 1.7713 -1.4426 6 6 3.3386 1.2639 0.7104 7 8 3.8192 0.1990 1.0357 8 7 3.9924 2.4103 0.9843 9 6 5.3096 2.3301 1.5774 10 6 5.1842 2.3486 3.1217 11 6 4.7424 3.6831 3.5697 12 7 3.4241 4.0799 3.0759 13 6 2.7383 4.9463 4.0438 14 6 3.5041 6.2354 4.1949 15 8 4.5507 6.3921 3.6021 16 7 3.0233 7.2164 4.9842 17 6 3.7171 8.3913 5.1171 18 1 4.6487 8.5310 4.5890 19 6 3.2211 9.4028 5.9305 20 7 2.0873 9.2331 6.5727 21 14 4.1668 11.0034 6.1121 22 1 4.3074 11.6490 4.7822 23 1 3.4315 11.9116 7.0285 24 1 5.5137 10.7219 6.6706 25 6 3.5361 4.7289 1.7869 26 6 3.3324 3.6933 0.6651 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.2497 1.8834 -1.9309 31 1 2.7383 2.7289 -1.4438 32 1 2.8129 1.0334 -1.9806 33 1 5.9071 3.1814 1.2514 34 1 5.7935 1.4052 1.2633 35 1 6.1522 2.1187 3.5668 36 1 4.4553 1.6012 3.4351 37 1 5.4731 4.4197 3.2353 38 1 4.7201 3.6898 4.6595 39 1 2.6831 4.4413 5.0083 40 1 1.7307 5.1618 3.6884 41 1 2.1863 7.0911 5.4582 42 1 1.7412 9.9391 7.1408 43 1 2.7765 5.5064 1.7051 44 1 4.5249 5.1774 1.6913 45 1 3.7486 4.0866 -0.2625 46 1 2.2647 3.5205 0.5296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195036114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:44 Heat of formation + Delta-G solvation = -119.231891 kcal Electronic energy + Delta-G solvation = -27588.315233 eV Core-core repulsion = 23705.832019 eV Total energy + Delta-G solvation = -3882.483214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65599 -40.63430 -38.96175 -38.18221 -36.26707 -35.56840 -34.31760 -33.30362 -32.21020 -30.48637 -28.02911 -27.62762 -27.14056 -25.70125 -24.93479 -22.81155 -22.03514 -20.91455 -20.12105 -19.79536 -18.47283 -18.10607 -17.64216 -17.19313 -16.70825 -16.54105 -16.31409 -16.14499 -15.83920 -15.81140 -15.49804 -15.20496 -14.82651 -14.45350 -14.25224 -13.94541 -13.81249 -13.61103 -13.44311 -13.24992 -13.19647 -12.92167 -12.81147 -12.62001 -12.45112 -12.32686 -12.22414 -12.14131 -11.98118 -11.82480 -11.66824 -11.43246 -10.93566 -10.83292 -10.42099 -10.01472 -9.59167 -9.14750 -8.46877 -5.96361 1.37173 1.40496 1.50462 1.60250 1.87030 2.02554 2.27978 2.83566 3.04081 3.19983 3.24722 3.50823 3.82393 3.90373 4.04293 4.05251 4.11045 4.18267 4.29041 4.41028 4.48758 4.50416 4.58788 4.62315 4.65672 4.67600 4.73134 4.78212 4.80939 4.84621 4.89293 4.90216 5.06310 5.12398 5.23154 5.34089 5.39894 5.63993 5.90365 6.03698 6.10848 6.15772 6.42186 6.58016 7.11049 7.21610 7.55238 8.08916 8.68617 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.002964 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.426514 B = 9444.038130 C = 9869.812086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.069 3.931 4 H 0.108 0.892 5 C -0.167 4.167 6 C 0.508 3.492 7 O -0.576 6.576 8 N -0.585 5.585 9 C 0.121 3.879 10 C -0.119 4.119 11 C 0.063 3.937 12 N -0.501 5.501 13 C 0.053 3.947 14 C 0.409 3.591 15 O -0.622 6.622 16 N -0.570 5.570 17 C -0.332 4.332 18 H 0.079 0.921 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.989 3.011 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.274 1.274 25 C 0.047 3.953 26 C 0.115 3.885 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.094 0.906 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 -11.747 -13.145 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.009 3.991 4 H 0.125 0.875 5 C -0.224 4.224 6 C 0.297 3.703 7 O -0.455 6.455 8 N -0.317 5.317 9 C -0.002 4.002 10 C -0.158 4.158 11 C -0.065 4.065 12 N -0.223 5.223 13 C -0.079 4.079 14 C 0.196 3.804 15 O -0.510 6.510 16 N -0.207 5.207 17 C -0.462 4.462 18 H 0.097 0.903 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.813 3.187 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.083 4.083 26 C -0.007 4.007 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.743 -12.647 -13.295 18.727 hybrid contribution 0.405 1.821 1.058 2.145 sum -3.338 -10.825 -12.238 16.676 Atomic orbital electron populations 1.23071 0.78798 1.04088 1.01361 1.87991 1.21798 1.26536 1.95211 1.22097 0.92429 0.86643 0.97975 0.87496 1.22280 1.04530 1.02470 0.93144 1.20986 0.87188 0.83459 0.78706 1.90653 1.69000 1.31269 1.54599 1.47597 1.17386 1.06022 1.60741 1.21402 0.83789 1.02562 0.92489 1.21259 1.01643 0.96423 0.96497 1.20902 0.90156 0.96680 0.98723 1.61465 1.20214 1.38116 1.02455 1.22301 0.98324 0.88734 0.98509 1.22040 0.88043 0.87553 0.82750 1.90480 1.26556 1.82555 1.51414 1.42088 1.23054 1.13817 1.41732 1.19601 1.06191 0.92876 1.27509 0.90312 1.25996 0.97121 1.02438 0.95589 1.69657 1.20235 1.35959 1.30134 0.85046 0.77986 0.77283 0.78395 1.19574 1.19685 1.19974 1.22321 1.01951 0.95055 0.88961 1.22470 0.99061 0.82133 0.97025 0.88623 0.93192 0.91775 0.89036 0.89236 0.92493 0.89903 0.90619 0.89381 0.92736 0.94368 0.93607 0.88114 0.86660 0.77070 0.91316 0.90487 0.93890 0.88824 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.40 -9.56 9.89 -130.08 -1.29 -10.85 16 3 C 0.07 1.40 2.29 29.85 0.07 1.47 16 4 H 0.11 1.70 6.37 -2.39 -0.02 1.69 16 5 C -0.17 -2.35 9.24 71.98 0.66 -1.69 16 6 C 0.51 13.89 6.98 87.66 0.61 14.50 16 7 O -0.58 -20.99 15.97 15.88 0.25 -20.73 16 8 N -0.59 -13.99 2.54 -817.16 -2.07 -16.06 16 9 C 0.12 3.05 5.41 87.39 0.47 3.52 16 10 C -0.12 -3.24 6.02 29.55 0.18 -3.06 16 11 C 0.06 1.99 4.03 84.72 0.34 2.33 16 12 N -0.50 -14.72 4.37 -916.54 -4.01 -18.73 16 13 C 0.05 1.67 5.49 85.56 0.47 2.14 16 14 C 0.41 17.65 7.09 87.66 0.62 18.27 16 15 O -0.62 -30.44 12.12 -3.08 -0.04 -30.48 16 16 N -0.57 -27.55 5.29 -306.98 -1.62 -29.17 16 17 C -0.33 -18.01 9.68 84.04 0.81 -17.20 16 18 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 19 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 20 N -0.92 -48.27 13.05 21.66 0.28 -47.99 16 21 Si 0.99 41.69 29.55 68.60 2.03 43.72 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 C 0.05 1.25 4.23 87.05 0.37 1.62 16 26 C 0.12 2.21 4.97 86.48 0.43 2.64 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 0.67 8.08 -2.39 -0.02 0.65 16 29 H 0.06 0.65 7.98 -2.39 -0.02 0.63 16 30 H 0.09 0.88 7.98 -2.38 -0.02 0.86 16 31 H 0.09 1.00 5.89 -2.39 -0.01 0.99 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.93 8.09 -2.39 -0.02 1.91 16 34 H 0.08 2.00 7.31 -2.38 -0.02 1.98 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 1.39 5.87 -2.38 -0.01 1.38 16 38 H 0.05 1.52 7.54 -2.38 -0.02 1.51 16 39 H 0.10 2.99 7.91 -2.38 -0.02 2.97 16 40 H 0.12 3.08 8.08 -2.39 -0.02 3.06 16 41 H 0.40 18.35 7.90 -92.71 -0.73 17.62 16 42 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 43 H 0.08 2.09 7.46 -2.38 -0.02 2.07 16 44 H 0.04 1.40 6.17 -2.39 -0.01 1.39 16 45 H 0.09 1.37 7.57 -2.38 -0.02 1.35 16 46 H 0.10 1.51 5.37 -2.39 -0.01 1.50 16 Total: -1.00 -71.41 359.45 0.53 -70.87 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.26 Total: 33.45 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: 6.73 Total: 25.97 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -7.42 Total: -111.95 kcal Atomic # 8 Polarization: -60.99 SS G_CDS: -1.07 Total: -62.06 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -71.41 0.53 -70.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195036114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.360 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds