Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00178 * 2 1 4 4 H 1.09000 * 109.47355 * 330.01061 * 3 2 1 5 5 C 1.53006 * 109.46716 * 90.00270 * 3 2 1 6 6 C 1.50696 * 109.47545 * 210.00417 * 3 2 1 7 7 O 1.21276 * 120.00084 * 347.59802 * 6 3 2 8 8 N 1.34778 * 119.99879 * 167.60434 * 6 3 2 9 9 C 1.47609 * 118.75239 * 354.31866 * 8 6 3 10 10 C 1.53793 * 111.25901 * 138.34814 * 9 8 6 11 11 C 1.51175 * 109.65704 * 319.84938 * 10 9 8 12 12 N 1.46192 * 109.04200 * 92.49429 * 11 10 9 13 13 C 1.46894 * 111.00073 * 144.77699 * 12 11 10 14 14 C 1.50703 * 109.47433 * 197.08012 * 13 12 11 15 15 O 1.21289 * 119.99782 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00024 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99902 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99836 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00011 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00086 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99953 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47407 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47101 * 120.00021 * 21 19 17 24 24 H 1.48502 * 109.47218 * 239.99457 * 21 19 17 25 25 C 1.41451 * 116.34655 * 272.97965 * 12 11 10 26 26 C 1.44892 * 118.74298 * 174.29695 * 8 6 3 27 27 H 1.09000 * 109.47178 * 59.99326 * 1 2 3 28 28 H 1.09003 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46863 * 299.99248 * 1 2 3 30 30 H 1.08996 * 109.47071 * 176.71244 * 5 3 2 31 31 H 1.09004 * 109.47285 * 296.71185 * 5 3 2 32 32 H 1.09001 * 109.47353 * 56.71222 * 5 3 2 33 33 H 1.08999 * 109.11399 * 258.79138 * 9 8 6 34 34 H 1.09002 * 109.10558 * 17.90921 * 9 8 6 35 35 H 1.08996 * 109.44306 * 79.97417 * 10 9 8 36 36 H 1.08995 * 109.45023 * 199.88422 * 10 9 8 37 37 H 1.09004 * 109.55614 * 332.63021 * 11 10 9 38 38 H 1.08994 * 109.62949 * 212.40524 * 11 10 9 39 39 H 1.09003 * 109.47047 * 317.08054 * 13 12 11 40 40 H 1.09003 * 109.47509 * 77.07988 * 13 12 11 41 41 H 0.97001 * 120.00259 * 0.02562 * 16 14 13 42 42 H 0.97005 * 120.00231 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.38120 * 303.32594 * 25 12 11 44 44 H 1.08996 * 109.38509 * 183.64460 * 25 12 11 45 45 H 1.08991 * 109.43361 * 29.79120 * 26 8 6 46 46 H 1.08999 * 109.43184 * 149.66141 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2178 1.7712 1.4426 6 6 3.3386 1.2639 -0.7105 7 8 3.8533 0.1974 -0.9720 8 7 3.9546 2.4121 -1.0551 9 6 3.2478 3.6898 -0.8386 10 6 4.1967 4.7646 -0.2823 11 6 5.1233 4.1456 0.7393 12 7 6.3514 3.7175 0.0717 13 6 7.5173 3.9005 0.9464 14 6 8.7769 3.8577 0.1202 15 8 8.7100 3.6908 -1.0792 16 7 9.9777 4.0050 0.7142 17 6 11.1237 3.9656 -0.0374 18 1 11.0642 3.8161 -1.1053 19 6 12.3617 4.1169 0.5750 20 7 12.4342 4.2983 1.8745 21 14 13.9230 4.0640 -0.4491 22 1 13.5720 3.8504 -1.8761 23 1 14.6531 5.3491 -0.3054 24 1 14.7853 2.9498 0.0202 25 6 6.3398 2.4206 -0.4928 26 6 5.2857 2.3452 -1.6235 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.7143 2.7415 1.4432 31 1 1.2512 1.8574 1.9392 32 1 2.8355 1.0466 1.9731 33 1 2.8349 4.0343 -1.7867 34 1 2.4336 3.5317 -0.1313 35 1 4.7842 5.1870 -1.0974 36 1 3.6131 5.5542 0.1909 37 1 4.6379 3.2836 1.1971 38 1 5.3633 4.8797 1.5083 39 1 7.4458 4.8644 1.4503 40 1 7.5429 3.1032 1.6893 41 1 10.0313 4.1382 1.6736 42 1 13.2985 4.4043 2.3020 43 1 6.0943 1.6920 0.2799 44 1 7.3250 2.1948 -0.9008 45 1 5.4018 1.4069 -2.1656 46 1 5.4294 3.1800 -2.3095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195036115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -89.758182 kcal Electronic energy + Delta-G solvation = -27418.295751 eV Core-core repulsion = 23537.090612 eV Total energy + Delta-G solvation = -3881.205138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72758 -38.97428 -37.93958 -37.14398 -35.18361 -33.82650 -32.75599 -31.86736 -31.22917 -29.09805 -27.15396 -26.83158 -25.78892 -24.50152 -23.72512 -22.00238 -20.64048 -19.41002 -18.94773 -17.91688 -17.68062 -16.98571 -16.22006 -15.96977 -15.86068 -15.36614 -15.24025 -14.97202 -14.64156 -14.39780 -14.07372 -13.83515 -13.64985 -13.50596 -13.28924 -12.89005 -12.80362 -12.67409 -12.31792 -12.11227 -11.86985 -11.52787 -11.50392 -11.44475 -11.38502 -11.17097 -10.93628 -10.88586 -10.83596 -10.33054 -10.21847 -10.19981 -9.56622 -9.45296 -8.69370 -8.39857 -7.95258 -7.70891 -6.40503 -3.81086 2.50776 2.67163 3.17423 3.28061 3.35254 3.59512 3.91985 3.98171 4.22035 4.26973 4.49254 4.61374 4.66988 4.80085 4.93737 5.01392 5.01822 5.08733 5.16282 5.24706 5.30170 5.30963 5.33889 5.43175 5.49050 5.55628 5.65753 5.74554 5.79898 5.81753 5.87438 5.95488 6.17293 6.19821 6.31010 6.37344 6.59099 6.78464 7.26335 7.37550 7.56754 7.75533 8.08313 8.13100 8.63084 9.19668 9.56137 10.07584 10.77332 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028866 B = 0.002748 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.779073 B =10186.351275 C =10389.388464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.083 0.917 5 C -0.175 4.175 6 C 0.508 3.492 7 O -0.517 6.517 8 N -0.604 5.604 9 C 0.100 3.900 10 C -0.132 4.132 11 C 0.070 3.930 12 N -0.540 5.540 13 C 0.054 3.946 14 C 0.443 3.557 15 O -0.577 6.577 16 N -0.565 5.565 17 C -0.297 4.297 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.061 3.939 26 C 0.121 3.879 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.014 0.986 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.060 0.256 0.890 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.100 0.900 5 C -0.233 4.233 6 C 0.294 3.706 7 O -0.392 6.392 8 N -0.339 5.339 9 C -0.022 4.022 10 C -0.171 4.171 11 C -0.058 4.058 12 N -0.264 5.264 13 C -0.077 4.077 14 C 0.228 3.772 15 O -0.461 6.461 16 N -0.202 5.202 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.068 4.068 26 C -0.001 4.001 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.225 0.775 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.130 0.870 45 H 0.105 0.895 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.503 -0.308 -0.326 23.507 hybrid contribution 0.526 -0.057 0.954 1.091 sum -22.976 -0.365 0.628 22.988 Atomic orbital electron populations 1.22880 0.80771 1.03241 0.99929 1.88071 1.19513 1.25283 1.94941 1.21983 0.93809 0.86569 0.96823 0.89973 1.22348 1.03372 1.02609 0.94948 1.20423 0.86627 0.84256 0.79298 1.90720 1.66295 1.29255 1.52920 1.47898 1.17561 1.05621 1.62825 1.22173 0.94994 0.84034 1.01014 1.21884 0.97578 0.97016 1.00640 1.21558 0.90141 0.98883 0.95178 1.57780 1.01799 1.28988 1.37851 1.21831 0.90465 1.01468 0.93949 1.19810 0.84250 0.84400 0.88740 1.90480 1.86453 1.54373 1.14822 1.41892 1.04650 1.63261 1.10358 1.19742 0.82899 1.46216 0.93777 0.87853 1.25258 0.99458 0.97351 0.95951 1.69620 1.26248 1.49702 1.08820 0.85809 0.80984 0.77695 0.79915 1.19214 1.20785 1.20795 1.21804 1.01745 0.87337 0.95944 1.21625 0.79151 1.03515 0.95849 0.93913 0.89152 0.93856 0.90339 0.91194 0.90884 0.91481 0.90244 0.89388 0.90333 0.94488 0.91004 0.89471 0.93608 0.77535 0.91959 0.96769 0.87013 0.89456 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.36 -4.35 9.91 -54.83 -0.54 -4.89 16 3 C 0.07 0.72 2.27 -27.88 -0.06 0.65 16 4 H 0.08 0.61 6.75 -51.93 -0.35 0.26 16 5 C -0.18 -1.46 9.10 37.16 0.34 -1.13 16 6 C 0.51 7.11 6.94 -10.99 -0.08 7.04 16 7 O -0.52 -9.67 15.95 -14.04 -0.22 -9.89 16 8 N -0.60 -7.46 2.19 -172.46 -0.38 -7.84 16 9 C 0.10 0.85 5.41 -3.02 -0.02 0.84 16 10 C -0.13 -1.22 5.77 -27.24 -0.16 -1.38 16 11 C 0.07 0.82 5.32 -5.13 -0.03 0.79 16 12 N -0.54 -8.60 3.60 -241.01 -0.87 -9.46 16 13 C 0.05 0.94 5.44 -4.98 -0.03 0.91 16 14 C 0.44 10.27 7.37 -10.98 -0.08 10.19 16 15 O -0.58 -15.15 13.96 5.55 0.08 -15.07 16 16 N -0.56 -14.23 5.29 -10.96 -0.06 -14.28 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 21 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 C 0.06 1.05 5.01 -5.74 -0.03 1.02 16 26 C 0.12 1.80 5.56 -3.97 -0.02 1.78 16 27 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.24 7.95 -51.93 -0.41 -0.18 16 30 H 0.08 0.58 4.79 -51.93 -0.25 0.33 16 31 H 0.07 0.43 7.95 -51.93 -0.41 0.02 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.50 4.27 -51.93 -0.22 0.28 16 35 H 0.09 0.99 7.98 -51.93 -0.41 0.57 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.04 0.43 5.88 -51.93 -0.31 0.13 16 38 H 0.07 0.76 7.36 -51.93 -0.38 0.38 16 39 H 0.09 1.35 7.57 -51.93 -0.39 0.96 16 40 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 41 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.01 0.26 8.12 -51.93 -0.42 -0.17 16 44 H 0.11 2.31 5.61 -51.93 -0.29 2.02 16 45 H 0.09 1.40 7.21 -51.93 -0.37 1.03 16 46 H 0.09 1.29 8.11 -51.93 -0.42 0.86 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -34.31 360.68 -7.18 -41.49 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.01 Total: 8.18 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 0.69 Total: 14.10 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.58 Total: -55.47 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.69 Total: -29.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.31 -7.18 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195036115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.266 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds