Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00178 * 2 1 4 4 H 1.09000 * 109.47355 * 330.01061 * 3 2 1 5 5 C 1.53006 * 109.46716 * 90.00270 * 3 2 1 6 6 C 1.50696 * 109.47545 * 210.00417 * 3 2 1 7 7 O 1.21276 * 120.00084 * 347.59802 * 6 3 2 8 8 N 1.34778 * 119.99879 * 167.60434 * 6 3 2 9 9 C 1.47609 * 118.75239 * 354.31866 * 8 6 3 10 10 C 1.53793 * 111.25901 * 138.34814 * 9 8 6 11 11 C 1.51175 * 109.65704 * 319.84938 * 10 9 8 12 12 N 1.46192 * 109.04200 * 92.49429 * 11 10 9 13 13 C 1.46894 * 111.00073 * 144.77699 * 12 11 10 14 14 C 1.50703 * 109.47433 * 197.08012 * 13 12 11 15 15 O 1.21289 * 119.99782 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00024 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99902 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99836 * 359.97438 * 17 16 14 19 19 C 1.38947 * 120.00011 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00086 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99953 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47407 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47101 * 120.00021 * 21 19 17 24 24 H 1.48502 * 109.47218 * 239.99457 * 21 19 17 25 25 C 1.41451 * 116.34655 * 272.97965 * 12 11 10 26 26 C 1.44892 * 118.74298 * 174.29695 * 8 6 3 27 27 H 1.09000 * 109.47178 * 59.99326 * 1 2 3 28 28 H 1.09003 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46863 * 299.99248 * 1 2 3 30 30 H 1.08996 * 109.47071 * 176.71244 * 5 3 2 31 31 H 1.09004 * 109.47285 * 296.71185 * 5 3 2 32 32 H 1.09001 * 109.47353 * 56.71222 * 5 3 2 33 33 H 1.08999 * 109.11399 * 258.79138 * 9 8 6 34 34 H 1.09002 * 109.10558 * 17.90921 * 9 8 6 35 35 H 1.08996 * 109.44306 * 79.97417 * 10 9 8 36 36 H 1.08995 * 109.45023 * 199.88422 * 10 9 8 37 37 H 1.09004 * 109.55614 * 332.63021 * 11 10 9 38 38 H 1.08994 * 109.62949 * 212.40524 * 11 10 9 39 39 H 1.09003 * 109.47047 * 317.08054 * 13 12 11 40 40 H 1.09003 * 109.47509 * 77.07988 * 13 12 11 41 41 H 0.97001 * 120.00259 * 0.02562 * 16 14 13 42 42 H 0.97005 * 120.00231 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.38120 * 303.32594 * 25 12 11 44 44 H 1.08996 * 109.38509 * 183.64460 * 25 12 11 45 45 H 1.08991 * 109.43361 * 29.79120 * 26 8 6 46 46 H 1.08999 * 109.43184 * 149.66141 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2178 1.7712 1.4426 6 6 3.3386 1.2639 -0.7105 7 8 3.8533 0.1974 -0.9720 8 7 3.9546 2.4121 -1.0551 9 6 3.2478 3.6898 -0.8386 10 6 4.1967 4.7646 -0.2823 11 6 5.1233 4.1456 0.7393 12 7 6.3514 3.7175 0.0717 13 6 7.5173 3.9005 0.9464 14 6 8.7769 3.8577 0.1202 15 8 8.7100 3.6908 -1.0792 16 7 9.9777 4.0050 0.7142 17 6 11.1237 3.9656 -0.0374 18 1 11.0642 3.8161 -1.1053 19 6 12.3617 4.1169 0.5750 20 7 12.4342 4.2983 1.8745 21 14 13.9230 4.0640 -0.4491 22 1 13.5720 3.8504 -1.8761 23 1 14.6531 5.3491 -0.3054 24 1 14.7853 2.9498 0.0202 25 6 6.3398 2.4206 -0.4928 26 6 5.2857 2.3452 -1.6235 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.7143 2.7415 1.4432 31 1 1.2512 1.8574 1.9392 32 1 2.8355 1.0466 1.9731 33 1 2.8349 4.0343 -1.7867 34 1 2.4336 3.5317 -0.1313 35 1 4.7842 5.1870 -1.0974 36 1 3.6131 5.5542 0.1909 37 1 4.6379 3.2836 1.1971 38 1 5.3633 4.8797 1.5083 39 1 7.4458 4.8644 1.4503 40 1 7.5429 3.1032 1.6893 41 1 10.0313 4.1382 1.6736 42 1 13.2985 4.4043 2.3020 43 1 6.0943 1.6920 0.2799 44 1 7.3250 2.1948 -0.9008 45 1 5.4018 1.4069 -2.1656 46 1 5.4294 3.1800 -2.3095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195036115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -115.399077 kcal Electronic energy + Delta-G solvation = -27419.407623 eV Core-core repulsion = 23537.090612 eV Total energy + Delta-G solvation = -3882.317011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77155 -40.45029 -39.11219 -38.32677 -36.44991 -35.75625 -33.74864 -33.26757 -32.67080 -30.40002 -28.14914 -27.68584 -27.02478 -26.00254 -24.83969 -23.04179 -21.68206 -21.07696 -20.10500 -19.82673 -18.64962 -18.04647 -17.63686 -17.05874 -16.86111 -16.65019 -16.46274 -16.10882 -16.08741 -15.74161 -15.52000 -15.33131 -14.70288 -14.62778 -14.31987 -14.15479 -13.71619 -13.58194 -13.46893 -13.36999 -13.05130 -12.93474 -12.81142 -12.69078 -12.53723 -12.43570 -12.36951 -12.12471 -12.07278 -11.80950 -11.74726 -11.45742 -10.96539 -10.51843 -10.27214 -9.99265 -9.70142 -9.07698 -8.46079 -5.94240 1.36042 1.41142 1.47413 1.55232 1.76217 2.06885 2.28544 2.76094 2.88906 3.20852 3.36175 3.45662 3.81655 3.85255 3.96073 4.01748 4.12244 4.14832 4.28198 4.35651 4.41400 4.44540 4.50349 4.51246 4.55338 4.55810 4.69634 4.75489 4.78198 4.83971 4.86312 4.90446 5.00448 5.12857 5.17725 5.35019 5.41907 5.59659 5.93022 6.05157 6.14887 6.32035 6.54299 6.61829 7.09994 7.14271 7.58133 8.13906 8.71600 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.028866 B = 0.002748 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.779073 B =10186.351275 C =10389.388464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.401 6.401 3 C 0.074 3.926 4 H 0.121 0.879 5 C -0.170 4.170 6 C 0.498 3.502 7 O -0.579 6.579 8 N -0.599 5.599 9 C 0.094 3.906 10 C -0.127 4.127 11 C 0.065 3.935 12 N -0.548 5.548 13 C 0.065 3.935 14 C 0.440 3.560 15 O -0.612 6.612 16 N -0.576 5.576 17 C -0.329 4.329 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.991 3.009 22 H -0.274 1.274 23 H -0.269 1.269 24 H -0.273 1.273 25 C 0.074 3.926 26 C 0.132 3.868 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.056 0.944 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.000 1.000 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.635 2.257 2.020 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.013 3.987 4 H 0.138 0.862 5 C -0.227 4.227 6 C 0.286 3.714 7 O -0.458 6.458 8 N -0.332 5.332 9 C -0.027 4.027 10 C -0.165 4.165 11 C -0.061 4.061 12 N -0.273 5.273 13 C -0.066 4.066 14 C 0.227 3.773 15 O -0.498 6.498 16 N -0.214 5.214 17 C -0.458 4.458 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.563 5.563 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.056 4.056 26 C 0.008 3.992 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.136 0.864 40 H 0.074 0.926 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.018 0.982 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.128 1.742 0.834 26.200 hybrid contribution 1.249 -0.684 0.588 1.541 sum -24.879 1.058 1.422 24.942 Atomic orbital electron populations 1.23112 0.78448 1.04167 1.01704 1.88030 1.22160 1.26588 1.95205 1.22094 0.91889 0.86977 0.97737 0.86172 1.22347 1.04710 1.02260 0.93380 1.21347 0.87924 0.83546 0.78544 1.90687 1.68141 1.31557 1.55436 1.47978 1.16339 1.07142 1.61756 1.22545 0.95177 0.81809 1.03133 1.21880 0.97296 0.97860 0.99453 1.21797 0.88468 0.99562 0.96315 1.57821 1.03161 1.27876 1.38430 1.21742 0.88252 1.03412 0.93191 1.20871 0.85434 0.82088 0.88859 1.90460 1.87244 1.55225 1.16849 1.41963 1.04853 1.64221 1.10367 1.19669 0.84668 1.48350 0.93136 0.90390 1.26016 1.01823 0.96441 0.97120 1.69677 1.27296 1.49609 1.09723 0.84892 0.77304 0.78308 0.77969 1.19866 1.19449 1.19825 1.21493 1.00093 0.87906 0.96104 1.21266 0.80509 1.02431 0.94964 0.92489 0.88900 0.91561 0.88942 0.88176 0.93557 0.89417 0.86977 0.91443 0.86182 0.94099 0.88984 0.86434 0.92617 0.77104 0.91376 0.98242 0.91438 0.91672 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.40 -9.16 9.91 -130.24 -1.29 -10.45 16 3 C 0.07 1.33 2.27 29.85 0.07 1.40 16 4 H 0.12 1.21 6.75 -2.39 -0.02 1.20 16 5 C -0.17 -2.28 9.10 71.98 0.65 -1.62 16 6 C 0.50 13.75 6.94 87.66 0.61 14.35 16 7 O -0.58 -22.73 15.95 15.72 0.25 -22.48 16 8 N -0.60 -14.15 2.19 -817.93 -1.79 -15.94 16 9 C 0.09 1.23 5.41 86.43 0.47 1.70 16 10 C -0.13 -1.83 5.77 30.27 0.17 -1.66 16 11 C 0.06 1.32 5.32 85.84 0.46 1.78 16 12 N -0.55 -17.15 3.60 -916.42 -3.30 -20.45 16 13 C 0.06 2.23 5.44 85.56 0.47 2.70 16 14 C 0.44 21.03 7.37 87.66 0.65 21.68 16 15 O -0.61 -33.67 13.96 -3.06 -0.04 -33.71 16 16 N -0.58 -29.88 5.29 -306.98 -1.62 -31.50 16 17 C -0.33 -18.87 9.68 84.04 0.81 -18.05 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 20 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 21 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 C 0.07 2.66 5.01 87.90 0.44 3.10 16 26 C 0.13 4.09 5.56 87.28 0.49 4.58 16 27 H 0.06 0.51 8.08 -2.39 -0.02 0.49 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 0.48 7.95 -2.39 -0.02 0.46 16 30 H 0.09 0.95 4.79 -2.39 -0.01 0.94 16 31 H 0.10 0.76 7.95 -2.39 -0.02 0.74 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.78 4.27 -2.39 -0.01 0.77 16 35 H 0.07 1.32 7.98 -2.39 -0.02 1.31 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.04 0.83 5.88 -2.38 -0.01 0.82 16 38 H 0.09 1.55 7.36 -2.39 -0.02 1.53 16 39 H 0.12 3.37 7.57 -2.39 -0.02 3.35 16 40 H 0.06 1.84 8.11 -2.39 -0.02 1.82 16 41 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 42 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 43 H 0.00 -0.01 8.12 -2.39 -0.02 -0.03 16 44 H 0.07 3.02 5.61 -2.39 -0.01 3.00 16 45 H 0.06 2.29 7.21 -2.39 -0.02 2.27 16 46 H 0.09 2.72 8.11 -2.39 -0.02 2.70 16 Total: -1.00 -80.68 360.68 1.76 -78.92 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.27 Total: 28.83 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 6.97 Total: 31.12 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -6.43 Total: -117.91 kcal Atomic # 8 Polarization: -65.55 SS G_CDS: -1.08 Total: -66.64 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -80.68 1.76 -78.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195036115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.481 kcal (2) G-P(sol) polarization free energy of solvation -80.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds