Wall clock time and date at job start Fri Apr 10 2020 18:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47131 * 2 1 4 4 C 1.34773 * 119.99586 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00158 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99746 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46972 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47299 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47328 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99718 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99732 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99681 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.92089 * 31.10246 * 12 11 9 14 14 C 1.54915 * 111.00547 * 267.19663 * 12 11 9 15 15 N 1.47425 * 104.83334 * 204.91767 * 14 12 11 16 16 C 1.36938 * 125.64998 * 204.16451 * 15 14 12 17 17 H 1.07994 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00073 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99990 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47129 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47358 * 119.99943 * 20 18 16 23 23 H 1.48503 * 109.47297 * 239.99877 * 20 18 16 24 24 C 1.47022 * 108.70334 * 24.12789 * 15 14 12 25 25 C 1.54327 * 107.27336 * 358.94217 * 24 15 14 26 26 H 1.08993 * 110.72079 * 96.16743 * 25 24 15 27 27 O 1.42893 * 110.72400 * 219.44644 * 25 24 15 28 28 H 1.09004 * 109.47039 * 300.00453 * 1 2 3 29 29 H 1.09008 * 109.46932 * 59.99752 * 1 2 3 30 30 H 1.08994 * 109.47575 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46994 * 239.99586 * 2 1 3 32 32 H 1.08996 * 109.46492 * 119.99685 * 2 1 3 33 33 H 0.96995 * 120.00041 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.46809 * 60.00536 * 6 4 3 35 35 H 1.08996 * 109.47241 * 299.99780 * 6 4 3 36 36 H 1.09004 * 109.47035 * 59.99923 * 7 6 4 37 37 H 1.09000 * 109.47478 * 300.00157 * 7 6 4 38 38 H 1.08994 * 109.47125 * 59.99416 * 8 7 6 39 39 H 1.09010 * 109.46884 * 299.99790 * 8 7 6 40 40 H 0.97002 * 120.00096 * 0.02562 * 11 9 8 41 41 H 1.08997 * 110.36462 * 86.07761 * 14 12 11 42 42 H 1.08999 * 110.46102 * 323.80234 * 14 12 11 43 43 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.88723 * 239.52626 * 24 15 14 45 45 H 1.08998 * 109.88661 * 118.35607 * 24 15 14 46 46 H 0.96707 * 113.99718 * 298.54499 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7055 0.0005 6 6 3.8458 3.0482 -0.0001 7 6 5.3758 3.0481 0.0001 8 6 5.8859 4.4906 0.0001 9 6 7.3930 4.4905 -0.0004 10 8 7.9992 3.4402 -0.0003 11 7 8.0668 5.6577 -0.0010 12 6 9.5318 5.6576 -0.0009 13 1 9.9210 4.7855 -0.5264 14 6 10.0870 5.7290 1.4436 15 7 11.4290 6.3232 1.3031 16 6 12.4663 6.1689 2.1837 17 1 12.3357 5.5689 3.0721 18 6 13.6856 6.7836 1.9344 19 7 13.8449 7.5143 0.8514 20 14 15.1007 6.5725 3.1352 21 1 14.6679 5.7098 4.2637 22 1 16.2499 5.9390 2.4398 23 1 15.5095 7.9013 3.6571 24 6 11.4694 7.1081 0.0606 25 6 10.0881 6.9701 -0.6137 26 1 9.4488 7.8155 -0.3597 27 8 10.2271 6.8473 -2.0305 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.3881 2.1185 -0.0004 34 1 3.4821 3.5625 0.8895 35 1 3.4830 3.5615 -0.8905 36 1 5.7392 2.5339 -0.8897 37 1 5.7391 2.5347 0.8903 38 1 5.5225 5.0044 0.8900 39 1 5.5227 5.0044 -0.8900 40 1 7.5819 6.4978 -0.0007 41 1 10.1577 4.7296 1.8726 42 1 9.4543 6.3636 2.0641 43 1 14.6969 7.9442 0.6773 44 1 12.2444 6.7182 -0.5991 45 1 11.6669 8.1552 0.2898 46 1 10.6424 7.6117 -2.4527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197888528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:56 Heat of formation + Delta-G solvation = -110.831570 kcal Electronic energy + Delta-G solvation = -25616.872328 eV Core-core repulsion = 21734.753379 eV Total energy + Delta-G solvation = -3882.118949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.06841 -39.56852 -37.86068 -35.72394 -35.05697 -34.35272 -33.95470 -31.72471 -31.15447 -29.05030 -28.02151 -26.83690 -24.53412 -23.67197 -22.30434 -20.69796 -20.54352 -20.30521 -19.98500 -17.58029 -17.02333 -16.91966 -16.46216 -16.40813 -16.08741 -15.68333 -15.53905 -14.68954 -14.59312 -14.13135 -14.06951 -13.59237 -13.50904 -13.22655 -13.02505 -12.70411 -12.54307 -12.30227 -12.19526 -12.09809 -11.99875 -11.85144 -11.58111 -11.41186 -11.23715 -10.89248 -10.87141 -10.81392 -10.12992 -10.10568 -9.89676 -9.81957 -9.67386 -9.42764 -9.28078 -8.78465 -8.60457 -6.90308 -5.75662 -3.09940 2.41036 2.82667 2.89071 3.38367 3.41228 3.46080 3.48541 4.38019 4.44998 4.56676 4.62356 4.64826 4.69016 4.80731 4.87448 4.91247 5.17976 5.23529 5.27292 5.33120 5.40446 5.45105 5.45304 5.50144 5.59906 5.61648 5.69713 5.84808 6.01485 6.06571 6.12162 6.15425 6.31536 6.56809 6.65042 6.93928 7.14852 7.33301 7.47337 7.72185 7.78669 7.96465 8.13318 8.18258 8.50473 9.16096 9.76138 10.39235 11.36293 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002056 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.457406 B =13612.617550 C =14310.460737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.738 5.738 4 C 0.509 3.491 5 O -0.532 6.532 6 C -0.140 4.140 7 C -0.090 4.090 8 C -0.139 4.139 9 C 0.509 3.491 10 O -0.535 6.535 11 N -0.718 5.718 12 C 0.137 3.863 13 H 0.104 0.896 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.227 4.227 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.153 3.847 25 C 0.068 3.932 26 H 0.057 0.943 27 O -0.564 6.564 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.400 0.600 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.396 0.604 41 H 0.049 0.951 42 H 0.023 0.977 43 H 0.252 0.748 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.934 -3.611 -3.920 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.392 5.392 4 C 0.296 3.704 5 O -0.407 6.407 6 C -0.180 4.180 7 C -0.129 4.129 8 C -0.180 4.180 9 C 0.295 3.705 10 O -0.411 6.411 11 N -0.368 5.368 12 C 0.032 3.968 13 H 0.122 0.878 14 C 0.002 3.998 15 N -0.328 5.328 16 C -0.355 4.355 17 H 0.099 0.901 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.027 3.973 25 C 0.008 3.992 26 H 0.075 0.925 27 O -0.369 6.369 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.230 0.770 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -26.972 -5.590 -3.783 27.803 hybrid contribution 0.442 1.402 0.499 1.553 sum -26.530 -4.188 -3.284 27.058 Atomic orbital electron populations 1.22004 0.94468 1.03274 1.02466 1.21290 0.94159 0.83239 1.02489 1.46116 1.07350 1.08838 1.76855 1.20833 0.81933 0.92056 0.75622 1.90759 1.55166 1.46589 1.48208 1.21704 0.98371 0.93541 1.04371 1.21080 0.91504 0.94909 1.05381 1.21670 0.92655 0.99435 1.04206 1.20592 0.89935 0.83851 0.76088 1.90742 1.70368 1.31194 1.48845 1.45941 1.07318 1.08318 1.75245 1.22245 0.78101 0.98862 0.97597 0.87760 1.21852 0.87674 0.97423 0.92806 1.44256 1.07849 1.57085 1.23607 1.19149 0.89286 1.26205 1.00883 0.90071 1.24818 0.97827 0.99787 0.98036 1.69932 1.24254 1.36686 1.26337 0.85986 0.82209 0.77263 0.79968 1.20410 1.21655 1.21741 1.21840 0.90617 0.96807 0.88017 1.23464 0.99109 0.95702 0.80944 0.92534 1.86466 1.84057 1.46465 1.19885 0.91973 0.91990 0.90800 0.91540 0.91526 0.76639 0.88755 0.88791 0.90315 0.90258 0.88913 0.88995 0.77016 0.93223 0.95901 0.93718 0.92138 0.93336 0.77667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 10.03 37.16 0.37 -0.19 16 2 C 0.11 0.72 6.39 -4.04 -0.03 0.70 16 3 N -0.74 -4.79 5.56 -60.30 -0.33 -5.13 16 4 C 0.51 5.01 7.83 -10.99 -0.09 4.93 16 5 O -0.53 -7.98 15.98 5.56 0.09 -7.90 16 6 C -0.14 -0.98 5.70 -27.88 -0.16 -1.14 16 7 C -0.09 -0.99 3.79 -26.73 -0.10 -1.09 16 8 C -0.14 -1.32 5.70 -27.88 -0.16 -1.48 16 9 C 0.51 7.70 7.83 -10.98 -0.09 7.62 16 10 O -0.54 -10.80 15.62 5.56 0.09 -10.71 16 11 N -0.72 -10.55 5.20 -51.72 -0.27 -10.82 16 12 C 0.14 2.64 3.15 -65.78 -0.21 2.43 16 13 H 0.10 2.35 7.54 -51.93 -0.39 1.96 16 14 C 0.13 2.82 6.93 -2.53 -0.02 2.80 16 15 N -0.60 -15.55 3.39 -170.07 -0.58 -16.13 16 16 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 17 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -26.97 10.31 55.49 0.57 -26.40 16 20 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.15 3.65 5.14 -3.06 -0.02 3.63 16 25 C 0.07 1.26 3.98 -24.89 -0.10 1.16 16 26 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 27 O -0.56 -9.89 13.39 -35.23 -0.47 -10.36 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.18 8.14 -51.92 -0.42 -0.25 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 1.30 8.47 -40.82 -0.35 0.95 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 37 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 40 H 0.40 4.42 8.57 -40.82 -0.35 4.07 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.63 7.29 -51.93 -0.38 1.25 16 45 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 46 H 0.38 5.05 9.11 45.56 0.42 5.47 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -38.00 380.87 -7.91 -45.91 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.89 Total: 6.06 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -0.83 Total: 12.44 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.61 Total: -58.48 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.30 Total: -28.97 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.00 -7.91 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197888528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.924 kcal (2) G-P(sol) polarization free energy of solvation -37.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds