Wall clock time and date at job start Fri Apr 10 2020 18:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47131 * 2 1 4 4 C 1.34773 * 119.99586 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00158 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99746 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46972 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47299 * 180.02562 * 7 6 4 9 9 C 1.50703 * 109.47328 * 180.02562 * 8 7 6 10 10 O 1.21273 * 119.99718 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99732 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99681 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.92089 * 31.10246 * 12 11 9 14 14 C 1.54915 * 111.00547 * 267.19663 * 12 11 9 15 15 N 1.47425 * 104.83334 * 204.91767 * 14 12 11 16 16 C 1.36938 * 125.64998 * 204.16451 * 15 14 12 17 17 H 1.07994 * 119.99970 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00073 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99990 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47129 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47358 * 119.99943 * 20 18 16 23 23 H 1.48503 * 109.47297 * 239.99877 * 20 18 16 24 24 C 1.47022 * 108.70334 * 24.12789 * 15 14 12 25 25 C 1.54327 * 107.27336 * 358.94217 * 24 15 14 26 26 H 1.08993 * 110.72079 * 96.16743 * 25 24 15 27 27 O 1.42893 * 110.72400 * 219.44644 * 25 24 15 28 28 H 1.09004 * 109.47039 * 300.00453 * 1 2 3 29 29 H 1.09008 * 109.46932 * 59.99752 * 1 2 3 30 30 H 1.08994 * 109.47575 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46994 * 239.99586 * 2 1 3 32 32 H 1.08996 * 109.46492 * 119.99685 * 2 1 3 33 33 H 0.96995 * 120.00041 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.46809 * 60.00536 * 6 4 3 35 35 H 1.08996 * 109.47241 * 299.99780 * 6 4 3 36 36 H 1.09004 * 109.47035 * 59.99923 * 7 6 4 37 37 H 1.09000 * 109.47478 * 300.00157 * 7 6 4 38 38 H 1.08994 * 109.47125 * 59.99416 * 8 7 6 39 39 H 1.09010 * 109.46884 * 299.99790 * 8 7 6 40 40 H 0.97002 * 120.00096 * 0.02562 * 11 9 8 41 41 H 1.08997 * 110.36462 * 86.07761 * 14 12 11 42 42 H 1.08999 * 110.46102 * 323.80234 * 14 12 11 43 43 H 0.96998 * 119.99944 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.88723 * 239.52626 * 24 15 14 45 45 H 1.08998 * 109.88661 * 118.35607 * 24 15 14 46 46 H 0.96707 * 113.99718 * 298.54499 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7055 0.0005 6 6 3.8458 3.0482 -0.0001 7 6 5.3758 3.0481 0.0001 8 6 5.8859 4.4906 0.0001 9 6 7.3930 4.4905 -0.0004 10 8 7.9992 3.4402 -0.0003 11 7 8.0668 5.6577 -0.0010 12 6 9.5318 5.6576 -0.0009 13 1 9.9210 4.7855 -0.5264 14 6 10.0870 5.7290 1.4436 15 7 11.4290 6.3232 1.3031 16 6 12.4663 6.1689 2.1837 17 1 12.3357 5.5689 3.0721 18 6 13.6856 6.7836 1.9344 19 7 13.8449 7.5143 0.8514 20 14 15.1007 6.5725 3.1352 21 1 14.6679 5.7098 4.2637 22 1 16.2499 5.9390 2.4398 23 1 15.5095 7.9013 3.6571 24 6 11.4694 7.1081 0.0606 25 6 10.0881 6.9701 -0.6137 26 1 9.4488 7.8155 -0.3597 27 8 10.2271 6.8473 -2.0305 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.3881 2.1185 -0.0004 34 1 3.4821 3.5625 0.8895 35 1 3.4830 3.5615 -0.8905 36 1 5.7392 2.5339 -0.8897 37 1 5.7391 2.5347 0.8903 38 1 5.5225 5.0044 0.8900 39 1 5.5227 5.0044 -0.8900 40 1 7.5819 6.4978 -0.0007 41 1 10.1577 4.7296 1.8726 42 1 9.4543 6.3636 2.0641 43 1 14.6969 7.9442 0.6773 44 1 12.2444 6.7182 -0.5991 45 1 11.6669 8.1552 0.2898 46 1 10.6424 7.6117 -2.4527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197888528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:55 Heat of formation + Delta-G solvation = -144.225662 kcal Electronic energy + Delta-G solvation = -25618.320405 eV Core-core repulsion = 21734.753379 eV Total energy + Delta-G solvation = -3883.567026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09502 -40.65006 -39.41822 -36.67988 -36.36358 -35.56837 -35.17412 -33.61894 -31.76138 -30.43992 -29.38420 -28.37085 -26.34915 -24.45639 -23.09407 -22.36546 -21.88042 -21.37721 -21.14933 -19.12592 -18.45437 -18.12599 -17.58306 -17.32607 -17.12866 -16.82799 -16.46556 -16.36955 -15.81511 -15.43611 -15.37930 -14.81117 -14.54373 -14.46919 -14.40303 -14.14277 -13.76948 -13.50103 -13.19491 -13.16531 -12.90569 -12.77801 -12.74214 -12.68677 -12.66527 -12.38848 -12.34427 -12.06612 -11.90936 -11.67840 -11.53681 -11.12748 -10.93191 -10.79454 -10.71098 -10.11426 -10.07875 -8.98231 -7.90793 -5.27842 1.44110 1.45906 1.56101 1.68802 1.71806 2.07773 2.35940 2.47809 3.13028 3.30191 3.56060 3.70331 3.82261 3.93326 4.06396 4.11246 4.12616 4.14973 4.20975 4.21952 4.45069 4.52088 4.55748 4.66318 4.67914 4.74430 4.80552 4.81403 4.98446 5.05772 5.07137 5.21466 5.27052 5.35383 5.41059 5.43314 5.51098 5.55374 5.64575 6.12081 6.61782 6.64007 6.86398 7.03346 7.33752 7.36778 7.67580 8.29973 9.19149 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002056 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.457406 B =13612.617550 C =14310.460737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.720 5.720 4 C 0.499 3.501 5 O -0.598 6.598 6 C -0.126 4.126 7 C -0.090 4.090 8 C -0.122 4.122 9 C 0.501 3.499 10 O -0.596 6.596 11 N -0.701 5.701 12 C 0.150 3.850 13 H 0.064 0.936 14 C 0.131 3.869 15 N -0.623 5.623 16 C -0.248 4.248 17 H 0.080 0.920 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.981 3.019 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.285 1.285 24 C 0.160 3.840 25 C 0.092 3.908 26 H 0.099 0.901 27 O -0.570 6.570 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.420 0.580 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.420 0.580 41 H 0.027 0.973 42 H 0.047 0.953 43 H 0.250 0.750 44 H 0.019 0.981 45 H 0.028 0.972 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.418 -1.437 -3.721 31.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 N -0.374 5.374 4 C 0.287 3.713 5 O -0.479 6.479 6 C -0.166 4.166 7 C -0.129 4.129 8 C -0.161 4.161 9 C 0.290 3.710 10 O -0.476 6.476 11 N -0.354 5.354 12 C 0.043 3.957 13 H 0.082 0.918 14 C 0.004 3.996 15 N -0.351 5.351 16 C -0.377 4.377 17 H 0.098 0.902 18 C -0.255 4.255 19 N -0.596 5.596 20 Si 0.809 3.191 21 H -0.193 1.193 22 H -0.220 1.220 23 H -0.212 1.212 24 C 0.034 3.966 25 C 0.032 3.968 26 H 0.116 0.884 27 O -0.378 6.378 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.257 0.743 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.258 0.742 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.046 0.954 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -30.563 -3.346 -3.594 30.955 hybrid contribution 1.501 0.664 0.414 1.692 sum -29.063 -2.682 -3.180 29.359 Atomic orbital electron populations 1.21940 0.91597 1.04055 1.03519 1.21335 0.96413 0.83081 1.00906 1.46010 1.06767 1.09600 1.74984 1.21498 0.82420 0.92798 0.74560 1.90741 1.56949 1.48686 1.51481 1.21685 0.95005 0.92002 1.07860 1.20974 0.94604 0.95359 1.01923 1.21710 0.87500 0.98915 1.08011 1.21764 0.92404 0.82678 0.74176 1.90733 1.72068 1.33452 1.51392 1.45713 1.05124 1.09717 1.74802 1.21690 0.81000 0.97667 0.95361 0.91802 1.21947 0.86504 0.96307 0.94828 1.44532 1.08925 1.57724 1.23880 1.19482 0.90533 1.26195 1.01478 0.90210 1.25655 1.00175 0.99815 0.99865 1.70130 1.24496 1.37290 1.27713 0.84975 0.78709 0.77319 0.78088 1.19317 1.21981 1.21165 1.21661 0.93017 0.94882 0.87045 1.23176 0.96155 0.96450 0.81038 0.88351 1.86432 1.84179 1.48152 1.19029 0.90871 0.90842 0.90253 0.93220 0.93264 0.74279 0.85063 0.85033 0.93970 0.93981 0.84831 0.84882 0.74198 0.95413 0.93483 0.94103 0.96322 0.95356 0.75396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.03 71.98 0.72 -0.01 16 2 C 0.11 1.33 6.39 86.38 0.55 1.88 16 3 N -0.72 -8.06 5.56 -463.07 -2.57 -10.63 16 4 C 0.50 9.39 7.83 87.66 0.69 10.08 16 5 O -0.60 -18.98 15.98 -3.03 -0.05 -19.03 16 6 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 7 C -0.09 -1.88 3.79 30.59 0.12 -1.76 16 8 C -0.12 -1.85 5.70 29.85 0.17 -1.68 16 9 C 0.50 14.48 7.83 87.66 0.69 15.16 16 10 O -0.60 -24.97 15.62 -3.01 -0.05 -25.02 16 11 N -0.70 -18.94 5.20 -435.95 -2.27 -21.21 16 12 C 0.15 5.72 3.15 46.39 0.15 5.86 16 13 H 0.06 2.99 7.54 -2.39 -0.02 2.97 16 14 C 0.13 5.72 6.93 86.86 0.60 6.32 16 15 N -0.62 -33.00 3.39 -691.99 -2.35 -35.35 16 16 C -0.25 -14.37 10.28 84.03 0.86 -13.51 16 17 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 18 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 19 N -0.95 -56.71 10.31 21.65 0.22 -56.49 16 20 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 24 C 0.16 7.77 5.14 86.73 0.45 8.22 16 25 C 0.09 3.29 3.98 31.79 0.13 3.42 16 26 H 0.10 2.78 8.00 -2.39 -0.02 2.76 16 27 O -0.57 -19.15 13.39 -148.98 -2.00 -21.15 16 28 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.08 0.32 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 1.25 8.47 -92.71 -0.79 0.46 16 34 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.04 1.17 8.06 -2.38 -0.02 1.15 16 37 H 0.04 1.17 8.06 -2.39 -0.02 1.15 16 38 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.42 7.42 8.57 -92.71 -0.79 6.63 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.02 1.05 7.29 -2.39 -0.02 1.03 16 45 H 0.03 1.47 7.51 -2.39 -0.02 1.45 16 46 H 0.40 9.92 9.11 -74.05 -0.67 9.25 16 Total: -1.00 -91.86 380.87 -2.53 -94.39 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -1.25 Total: 16.19 kcal Atomic # 6 Polarization: 23.95 SS G_CDS: 5.75 Total: 29.70 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -6.96 Total: -123.67 kcal Atomic # 8 Polarization: -63.10 SS G_CDS: -2.09 Total: -65.19 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -91.86 -2.53 -94.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197888528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.840 kcal (2) G-P(sol) polarization free energy of solvation -91.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds