Wall clock time and date at job start Fri Apr 10 2020 18:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 C 1.52995 * 109.47028 * 240.00136 * 2 1 3 5 5 C 1.50698 * 109.47004 * 119.99815 * 2 1 3 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 2 1 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 2 9 9 H 1.09003 * 110.63082 * 36.92981 * 8 7 5 10 10 C 1.54323 * 110.70918 * 273.82387 * 8 7 5 11 11 N 1.47436 * 107.23582 * 219.33610 * 10 8 7 12 12 C 1.46899 * 111.00021 * 236.74025 * 11 10 8 13 13 C 1.50704 * 109.47146 * 189.99855 * 12 11 10 14 14 O 1.21283 * 119.99967 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99785 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99999 * 180.02562 * 15 13 12 17 17 H 1.08006 * 119.99629 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00179 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00240 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47062 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46923 * 120.00323 * 20 18 16 23 23 H 1.48496 * 109.47370 * 240.00105 * 20 18 16 24 24 C 1.47840 * 108.56880 * 359.00695 * 11 10 8 25 25 C 1.54907 * 104.79633 * 24.09728 * 24 11 10 26 26 H 1.09006 * 110.99266 * 81.01753 * 25 24 11 27 27 O 1.42899 * 110.99477 * 204.83701 * 25 24 11 28 28 H 1.09007 * 109.47302 * 299.99719 * 1 2 3 29 29 H 1.08998 * 109.47611 * 59.99921 * 1 2 3 30 30 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47475 * 299.99715 * 3 2 1 33 33 H 1.09001 * 109.47406 * 60.00127 * 3 2 1 34 34 H 1.08995 * 109.47139 * 300.00141 * 4 2 1 35 35 H 1.09003 * 109.47199 * 59.99964 * 4 2 1 36 36 H 1.09001 * 109.46983 * 179.97438 * 4 2 1 37 37 H 0.97001 * 120.00485 * 0.02562 * 7 5 2 38 38 H 1.09005 * 109.88372 * 338.74390 * 10 8 7 39 39 H 1.08999 * 109.89115 * 99.92504 * 10 8 7 40 40 H 1.09001 * 109.47314 * 310.00276 * 12 11 10 41 41 H 1.09003 * 109.47122 * 70.00028 * 12 11 10 42 42 H 0.97001 * 119.99919 * 359.97438 * 15 13 12 43 43 H 0.97000 * 120.00341 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.37549 * 142.92638 * 24 11 10 45 45 H 1.09000 * 110.37843 * 265.15820 * 24 11 10 46 46 H 0.96698 * 113.99884 * 292.26647 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3574 -0.8339 1.4434 8 6 3.8457 -1.5192 2.6426 9 1 3.2041 -2.3651 2.8897 10 6 3.9387 -0.5395 3.8313 11 7 5.1681 -0.8703 4.5749 12 6 4.8680 -1.1708 5.9812 13 6 6.1544 -1.2618 6.7610 14 8 7.2165 -1.0925 6.2006 15 7 6.1244 -1.5313 8.0813 16 6 7.2945 -1.6136 8.7908 17 1 8.2404 -1.4628 8.2917 18 6 7.2637 -1.8909 10.1520 19 7 6.1128 -2.0749 10.7592 20 14 8.8582 -2.0038 11.1186 21 1 10.0065 -1.7592 10.2095 22 1 8.8559 -0.9838 12.1980 23 1 8.9796 -3.3574 11.7171 24 6 5.8222 -2.0204 3.9154 25 6 5.3155 -1.9780 2.4521 26 1 5.8780 -1.2520 1.8650 27 8 5.3736 -3.2737 1.8524 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 3.9877 -0.4653 0.8049 38 1 3.9920 0.4854 3.4638 39 1 3.0702 -0.6587 4.4790 40 1 4.2461 -0.3782 6.3974 41 1 4.3368 -2.1205 6.0445 42 1 5.2748 -1.6663 8.5295 43 1 6.0913 -2.2689 11.7093 44 1 6.9061 -1.9088 3.9450 45 1 5.5242 -2.9528 4.3950 46 1 6.2722 -3.6028 1.7133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198020447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:04 Heat of formation + Delta-G solvation = -121.540462 kcal Electronic energy + Delta-G solvation = -26712.420905 eV Core-core repulsion = 22829.837583 eV Total energy + Delta-G solvation = -3882.583322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61808 -39.27017 -37.84717 -35.95365 -35.78493 -34.51420 -33.79698 -31.26549 -30.14879 -28.22120 -27.73180 -27.42889 -26.46507 -24.34298 -23.18413 -21.51914 -20.82247 -19.66502 -19.16367 -17.90780 -17.56153 -17.09639 -16.58961 -15.95419 -15.43614 -15.17648 -14.87281 -14.76413 -14.35624 -14.25051 -13.92028 -13.81492 -13.72747 -13.11269 -12.97720 -12.84926 -12.71736 -12.59822 -12.47671 -12.22150 -12.06952 -12.01878 -11.87262 -11.50005 -11.32896 -11.30605 -11.29249 -11.01984 -10.69619 -10.34332 -10.24385 -10.20450 -9.79718 -9.50530 -9.31615 -8.48580 -7.98071 -7.91219 -6.40947 -3.81894 2.47488 2.89366 3.16473 3.26914 3.33800 3.69149 3.91072 4.13083 4.25263 4.30683 4.38924 4.46775 4.54220 4.74702 4.88121 4.90737 5.14619 5.16486 5.23378 5.24548 5.28816 5.30768 5.33890 5.45555 5.53378 5.55932 5.60973 5.72030 5.80216 5.83152 5.84798 5.89830 5.95158 5.98428 6.20925 6.27705 6.34559 7.07974 7.13913 7.29917 7.46297 7.55751 8.05451 8.06658 8.62244 9.18645 9.55168 10.06632 10.76917 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029108 B = 0.002508 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.712761 B =11163.449436 C =11593.775883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.140 4.140 5 C 0.524 3.476 6 O -0.536 6.536 7 N -0.715 5.715 8 C 0.133 3.867 9 H 0.102 0.898 10 C 0.033 3.967 11 N -0.497 5.497 12 C 0.039 3.961 13 C 0.445 3.555 14 O -0.579 6.579 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.025 3.975 25 C 0.086 3.914 26 H 0.077 0.923 27 O -0.559 6.559 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.400 0.600 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.101 0.899 45 H 0.055 0.945 46 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 3.452 -22.759 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.090 4.090 3 C -0.199 4.199 4 C -0.198 4.198 5 C 0.310 3.690 6 O -0.412 6.412 7 N -0.366 5.366 8 C 0.027 3.973 9 H 0.120 0.880 10 C -0.096 4.096 11 N -0.223 5.223 12 C -0.093 4.093 13 C 0.231 3.769 14 O -0.463 6.463 15 N -0.202 5.202 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.103 4.103 25 C 0.026 3.974 26 H 0.095 0.905 27 O -0.364 6.364 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.235 0.765 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.554 3.665 -22.328 24.190 hybrid contribution 0.585 -0.708 0.731 1.174 sum -7.969 2.957 -21.597 23.210 Atomic orbital electron populations 1.21663 0.91876 1.02898 1.02086 1.20826 0.98153 0.96458 0.93553 1.21878 1.01263 0.93671 1.03054 1.21864 1.01219 1.00693 0.95984 1.20602 0.82034 0.79210 0.87192 1.90710 1.55261 1.48161 1.47088 1.45896 1.07217 1.58813 1.24715 1.22133 0.94312 0.95518 0.85317 0.87983 1.23268 0.92633 0.99472 0.94211 1.63235 1.21126 1.36809 1.01089 1.22174 0.97465 1.00791 0.88865 1.19685 0.89901 0.84303 0.83058 1.90490 1.31419 1.54981 1.69431 1.41872 1.09713 1.61987 1.06622 1.19732 0.87191 1.45111 0.90678 0.87882 1.25269 0.98487 0.97329 0.96947 1.69622 1.24675 1.48624 1.11379 0.85803 0.81485 0.77733 0.79331 1.19244 1.20751 1.20782 1.23647 1.02044 0.92826 0.91783 1.23211 0.95041 0.85176 0.93985 0.90486 1.86487 1.33408 1.33368 1.83145 0.91833 0.92034 0.91928 0.92064 0.91300 0.91832 0.91980 0.91324 0.92121 0.76499 0.89872 0.91518 0.89108 0.93019 0.77478 0.91918 0.88116 0.92626 0.76869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 7.76 37.16 0.29 -0.76 16 2 C -0.09 -0.69 0.87 -155.66 -0.14 -0.83 16 3 C -0.14 -0.88 8.37 37.16 0.31 -0.57 16 4 C -0.14 -0.88 8.37 37.16 0.31 -0.56 16 5 C 0.52 6.00 6.48 -10.99 -0.07 5.93 16 6 O -0.54 -8.38 15.71 5.55 0.09 -8.29 16 7 N -0.71 -7.28 4.91 -52.04 -0.26 -7.54 16 8 C 0.13 1.68 2.97 -66.10 -0.20 1.48 16 9 H 0.10 1.53 7.70 -51.93 -0.40 1.13 16 10 C 0.03 0.46 6.61 -2.84 -0.02 0.44 16 11 N -0.50 -8.25 4.86 -232.69 -1.13 -9.38 16 12 C 0.04 0.71 5.05 -4.97 -0.03 0.68 16 13 C 0.45 10.54 7.58 -10.98 -0.08 10.46 16 14 O -0.58 -15.43 14.61 5.55 0.08 -15.35 16 15 N -0.57 -14.43 5.29 -10.96 -0.06 -14.49 16 16 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 17 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 20 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.03 0.39 5.48 -2.30 -0.01 0.38 16 25 C 0.09 1.01 4.03 -24.59 -0.10 0.92 16 26 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16 27 O -0.56 -6.29 13.47 -35.23 -0.47 -6.77 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.06 0.33 7.57 -51.93 -0.39 -0.06 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 37 H 0.40 3.05 7.35 -40.82 -0.30 2.75 16 38 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 39 H 0.07 0.95 7.55 -51.93 -0.39 0.56 16 40 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 41 H 0.05 0.89 7.85 -51.93 -0.41 0.48 16 42 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.10 1.72 7.38 -51.93 -0.38 1.34 16 45 H 0.06 0.91 7.62 -51.93 -0.40 0.52 16 46 H 0.38 2.77 9.12 45.56 0.42 3.19 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -34.19 375.56 -7.05 -41.24 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.69 Total: 13.28 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 0.03 Total: 9.58 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.72 Total: -55.43 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.31 Total: -30.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.19 -7.05 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198020447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.298 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds