Wall clock time and date at job start Fri Apr 10 2020 18:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 C 1.52995 * 109.47028 * 240.00136 * 2 1 3 5 5 C 1.50698 * 109.47004 * 119.99815 * 2 1 3 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 2 1 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 2 9 9 H 1.09003 * 110.63082 * 36.92981 * 8 7 5 10 10 C 1.54323 * 110.70918 * 273.82387 * 8 7 5 11 11 N 1.47436 * 107.23582 * 219.33610 * 10 8 7 12 12 C 1.46899 * 111.00021 * 236.74025 * 11 10 8 13 13 C 1.50704 * 109.47146 * 189.99855 * 12 11 10 14 14 O 1.21283 * 119.99967 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99785 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99999 * 180.02562 * 15 13 12 17 17 H 1.08006 * 119.99629 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00179 * 179.97438 * 16 15 13 19 19 N 1.31414 * 120.00240 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00090 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47062 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46923 * 120.00323 * 20 18 16 23 23 H 1.48496 * 109.47370 * 240.00105 * 20 18 16 24 24 C 1.47840 * 108.56880 * 359.00695 * 11 10 8 25 25 C 1.54907 * 104.79633 * 24.09728 * 24 11 10 26 26 H 1.09006 * 110.99266 * 81.01753 * 25 24 11 27 27 O 1.42899 * 110.99477 * 204.83701 * 25 24 11 28 28 H 1.09007 * 109.47302 * 299.99719 * 1 2 3 29 29 H 1.08998 * 109.47611 * 59.99921 * 1 2 3 30 30 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47475 * 299.99715 * 3 2 1 33 33 H 1.09001 * 109.47406 * 60.00127 * 3 2 1 34 34 H 1.08995 * 109.47139 * 300.00141 * 4 2 1 35 35 H 1.09003 * 109.47199 * 59.99964 * 4 2 1 36 36 H 1.09001 * 109.46983 * 179.97438 * 4 2 1 37 37 H 0.97001 * 120.00485 * 0.02562 * 7 5 2 38 38 H 1.09005 * 109.88372 * 338.74390 * 10 8 7 39 39 H 1.08999 * 109.89115 * 99.92504 * 10 8 7 40 40 H 1.09001 * 109.47314 * 310.00276 * 12 11 10 41 41 H 1.09003 * 109.47122 * 70.00028 * 12 11 10 42 42 H 0.97001 * 119.99919 * 359.97438 * 15 13 12 43 43 H 0.97000 * 120.00341 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.37549 * 142.92638 * 24 11 10 45 45 H 1.09000 * 110.37843 * 265.15820 * 24 11 10 46 46 H 0.96698 * 113.99884 * 292.26647 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3574 -0.8339 1.4434 8 6 3.8457 -1.5192 2.6426 9 1 3.2041 -2.3651 2.8897 10 6 3.9387 -0.5395 3.8313 11 7 5.1681 -0.8703 4.5749 12 6 4.8680 -1.1708 5.9812 13 6 6.1544 -1.2618 6.7610 14 8 7.2165 -1.0925 6.2006 15 7 6.1244 -1.5313 8.0813 16 6 7.2945 -1.6136 8.7908 17 1 8.2404 -1.4628 8.2917 18 6 7.2637 -1.8909 10.1520 19 7 6.1128 -2.0749 10.7592 20 14 8.8582 -2.0038 11.1186 21 1 10.0065 -1.7592 10.2095 22 1 8.8559 -0.9838 12.1980 23 1 8.9796 -3.3574 11.7171 24 6 5.8222 -2.0204 3.9154 25 6 5.3155 -1.9780 2.4521 26 1 5.8780 -1.2520 1.8650 27 8 5.3736 -3.2737 1.8524 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 3.9877 -0.4653 0.8049 38 1 3.9920 0.4854 3.4638 39 1 3.0702 -0.6587 4.4790 40 1 4.2461 -0.3782 6.3974 41 1 4.3368 -2.1205 6.0445 42 1 5.2748 -1.6663 8.5295 43 1 6.0913 -2.2689 11.7093 44 1 6.9061 -1.9088 3.9450 45 1 5.5242 -2.9528 4.3950 46 1 6.2722 -3.6028 1.7133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198020447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:03 Heat of formation + Delta-G solvation = -151.060096 kcal Electronic energy + Delta-G solvation = -26713.700972 eV Core-core repulsion = 22829.837583 eV Total energy + Delta-G solvation = -3883.863389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59011 -40.56640 -39.46959 -36.97771 -36.59915 -35.97437 -35.40158 -33.29852 -31.42220 -29.34389 -28.26441 -28.19172 -27.82499 -26.09852 -24.10282 -22.69769 -21.91717 -21.08663 -20.41413 -19.89032 -18.61020 -17.95522 -17.79854 -17.39577 -16.73087 -16.38743 -16.26401 -16.07351 -15.80226 -15.49358 -15.08086 -14.78315 -14.67918 -14.47416 -14.31160 -14.15439 -13.71291 -13.49601 -13.32461 -13.30559 -13.17941 -13.02567 -12.98104 -12.86458 -12.61378 -12.60776 -12.41175 -12.11494 -11.89722 -11.89175 -11.74262 -11.50142 -11.20744 -10.71057 -10.36495 -10.29112 -10.02323 -9.32755 -8.47267 -5.96298 1.36125 1.41235 1.55663 1.59163 2.00865 2.03230 2.27093 2.57453 3.08307 3.18194 3.26406 3.51200 3.56201 3.76578 3.86268 3.90042 3.95933 4.14099 4.21336 4.27481 4.28815 4.33969 4.44947 4.59114 4.72698 4.74797 4.75579 4.82709 4.84583 4.94342 4.96818 4.97882 5.02917 5.24244 5.33961 5.36338 5.40233 5.40444 5.72018 5.85578 6.02599 6.48521 6.58537 6.74013 7.11475 7.20396 7.54315 8.09088 8.70572 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029108 B = 0.002508 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.712761 B =11163.449436 C =11593.775883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.138 4.138 5 C 0.518 3.482 6 O -0.585 6.585 7 N -0.701 5.701 8 C 0.139 3.861 9 H 0.076 0.924 10 C 0.039 3.961 11 N -0.510 5.510 12 C 0.049 3.951 13 C 0.445 3.555 14 O -0.611 6.611 15 N -0.576 5.576 16 C -0.330 4.330 17 H 0.081 0.919 18 C -0.016 4.016 19 N -0.923 5.923 20 Si 0.995 3.005 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.025 3.975 25 C 0.106 3.894 26 H 0.105 0.895 27 O -0.568 6.568 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.416 0.584 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.083 4.297 -24.557 26.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 C -0.196 4.196 4 C -0.195 4.195 5 C 0.306 3.694 6 O -0.464 6.464 7 N -0.353 5.353 8 C 0.032 3.968 9 H 0.094 0.906 10 C -0.090 4.090 11 N -0.235 5.235 12 C -0.082 4.082 13 C 0.232 3.768 14 O -0.497 6.497 15 N -0.213 5.213 16 C -0.459 4.459 17 H 0.099 0.901 18 C -0.215 4.215 19 N -0.564 5.564 20 Si 0.818 3.182 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.104 4.104 25 C 0.046 3.954 26 H 0.122 0.878 27 O -0.376 6.376 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.254 0.746 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.228 0.772 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.058 0.942 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.279 4.515 -24.165 25.940 hybrid contribution 0.481 -0.986 1.245 1.659 sum -7.798 3.530 -22.920 24.466 Atomic orbital electron populations 1.21681 0.92350 1.01958 1.02563 1.20872 0.97780 0.97408 0.92409 1.21899 1.02095 0.92101 1.03543 1.21882 1.02021 0.99907 0.95688 1.21363 0.81817 0.78485 0.87729 1.90691 1.56454 1.50255 1.48984 1.45752 1.07345 1.58122 1.24106 1.21851 0.94420 0.94605 0.85921 0.90572 1.23257 0.91086 1.00364 0.94273 1.63184 1.22654 1.37311 1.00386 1.22036 0.94507 1.02146 0.89534 1.20575 0.91367 0.82250 0.82610 1.90461 1.33332 1.55894 1.69974 1.41953 1.09226 1.62772 1.07383 1.19704 0.87311 1.47244 0.91649 0.90063 1.26084 1.01864 0.96302 0.97280 1.69690 1.26276 1.48498 1.11944 0.84845 0.77306 0.78255 0.77770 1.19561 1.19658 1.19678 1.23595 1.00837 0.91696 0.94283 1.23013 0.94260 0.86175 0.91950 0.87783 1.86459 1.35321 1.33145 1.82631 0.93482 0.89367 0.93612 0.90762 0.89160 0.93043 0.93313 0.89109 0.90857 0.74581 0.88548 0.92119 0.87347 0.91819 0.77174 0.91337 0.90114 0.94233 0.74730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 7.76 71.98 0.56 -1.42 16 2 C -0.08 -1.14 0.87 -52.93 -0.05 -1.19 16 3 C -0.14 -1.33 8.37 71.98 0.60 -0.73 16 4 C -0.14 -1.33 8.37 71.98 0.60 -0.73 16 5 C 0.52 11.41 6.48 87.66 0.57 11.97 16 6 O -0.58 -18.56 15.71 -3.04 -0.05 -18.61 16 7 N -0.70 -13.05 4.91 -436.94 -2.15 -15.20 16 8 C 0.14 3.37 2.97 46.17 0.14 3.50 16 9 H 0.08 2.30 7.70 -2.39 -0.02 2.28 16 10 C 0.04 1.04 6.61 86.65 0.57 1.61 16 11 N -0.51 -16.70 4.86 -890.10 -4.33 -21.03 16 12 C 0.05 1.81 5.05 85.56 0.43 2.24 16 13 C 0.44 21.49 7.58 87.66 0.66 22.16 16 14 O -0.61 -33.36 14.61 -3.04 -0.04 -33.41 16 15 N -0.58 -30.13 5.29 -306.99 -1.62 -31.75 16 16 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 17 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 18 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 19 N -0.92 -50.66 13.05 21.66 0.28 -50.37 16 20 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 C 0.02 0.75 5.48 86.77 0.48 1.23 16 25 C 0.11 2.34 4.03 31.98 0.13 2.47 16 26 H 0.10 1.79 8.00 -2.38 -0.02 1.77 16 27 O -0.57 -11.83 13.47 -148.98 -2.01 -13.84 16 28 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.07 0.53 7.57 -2.39 -0.02 0.51 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.53 7.56 -2.39 -0.02 0.51 16 37 H 0.42 5.06 7.35 -92.71 -0.68 4.38 16 38 H 0.10 2.33 8.03 -2.38 -0.02 2.31 16 39 H 0.06 1.70 7.55 -2.39 -0.02 1.68 16 40 H 0.11 3.59 8.03 -2.39 -0.02 3.57 16 41 H 0.06 2.19 7.85 -2.39 -0.02 2.18 16 42 H 0.39 19.85 7.90 -92.71 -0.73 19.12 16 43 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.08 2.80 7.38 -2.39 -0.02 2.78 16 45 H 0.04 1.32 7.62 -2.39 -0.02 1.30 16 46 H 0.40 5.05 9.12 -74.06 -0.68 4.38 16 Total: -1.00 -75.77 375.56 -2.99 -78.76 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -1.08 Total: 37.53 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 5.98 Total: 22.69 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -7.82 Total: -118.36 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -2.10 Total: -65.86 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -75.77 -2.99 -78.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198020447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.303 kcal (2) G-P(sol) polarization free energy of solvation -75.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds