Wall clock time and date at job start Fri Apr 10 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 7 7 O 1.21287 * 119.99375 * 359.97438 * 6 3 2 8 8 N 1.34768 * 120.00550 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99870 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.46901 * 179.97438 * 9 8 6 11 11 O 1.21282 * 120.00069 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00149 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00267 * 180.02562 * 12 10 9 14 14 H 1.09008 * 110.88747 * 34.29286 * 13 12 10 15 15 C 1.54913 * 111.00536 * 270.41879 * 13 12 10 16 16 N 1.47461 * 104.81374 * 204.95000 * 15 13 12 17 17 C 1.36936 * 125.63189 * 204.04654 * 16 15 13 18 18 H 1.07997 * 119.99573 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00105 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00366 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99971 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46827 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46959 * 119.99964 * 21 19 17 24 24 H 1.48494 * 109.47039 * 239.99903 * 21 19 17 25 25 C 1.47031 * 108.72222 * 24.06620 * 16 15 13 26 26 C 1.54329 * 107.26908 * 358.97653 * 25 16 15 27 27 H 1.08990 * 110.71843 * 96.17207 * 26 25 16 28 28 O 1.42900 * 110.71824 * 219.44621 * 26 25 16 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 35 35 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 36 36 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 37 37 H 0.97005 * 120.00103 * 359.97438 * 8 6 3 38 38 H 1.09000 * 109.47148 * 299.99056 * 9 8 6 39 39 H 1.08998 * 109.47345 * 59.99868 * 9 8 6 40 40 H 0.96996 * 119.99797 * 359.97438 * 12 10 9 41 41 H 1.09006 * 110.36187 * 323.75127 * 15 13 12 42 42 H 1.09000 * 110.36819 * 86.07305 * 15 13 12 43 43 H 0.96997 * 120.00313 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.87753 * 239.55893 * 25 16 15 45 45 H 1.08993 * 110.00783 * 118.46620 * 25 16 15 46 46 H 0.96707 * 113.99863 * 293.52199 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4445 0.1238 7 8 4.1450 0.3953 0.2046 8 7 4.2148 2.6119 0.1457 9 6 5.6749 2.6136 0.2655 10 6 6.1772 4.0345 0.2656 11 8 5.3928 4.9550 0.1742 12 7 7.4982 4.2823 0.3663 13 6 7.9864 5.6635 0.3670 14 1 7.2790 6.3256 0.8665 15 6 8.2790 6.1498 -1.0744 16 7 9.2832 7.2179 -0.9154 17 6 9.5099 8.2378 -1.8006 18 1 8.9270 8.3055 -2.7072 19 6 10.4889 9.1847 -1.5326 20 7 11.1997 9.1019 -0.4279 21 14 10.7987 10.5756 -2.7404 22 1 9.8741 10.4436 -3.8950 23 1 10.5650 11.8779 -2.0662 24 1 12.2026 10.5113 -3.2199 25 6 10.0008 7.0064 0.3503 26 6 9.3910 5.7565 1.0194 27 1 9.9819 4.8697 0.7907 28 8 9.2811 5.9422 2.4320 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0698 1.5875 -2.1492 35 1 0.5488 2.1253 -1.3968 36 1 1.9988 3.1541 -1.3075 37 1 3.7324 3.4511 0.0815 38 1 5.9637 2.1258 1.1965 39 1 6.1092 2.0752 -0.5768 40 1 8.1255 3.5461 0.4391 41 1 8.6842 5.3350 -1.6746 42 1 7.3726 6.5453 -1.5327 43 1 11.8836 9.7637 -0.2404 44 1 9.8729 7.8735 0.9983 45 1 11.0606 6.8427 0.1552 46 1 10.1317 6.0065 2.8876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198744242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:12 Heat of formation + Delta-G solvation = -106.928503 kcal Electronic energy + Delta-G solvation = -26160.973534 eV Core-core repulsion = 22279.023834 eV Total energy + Delta-G solvation = -3881.949699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45942 -39.56025 -37.95366 -35.75748 -35.15538 -34.65835 -34.17187 -31.82626 -30.39682 -28.88573 -27.81556 -26.70639 -25.45144 -24.35663 -22.06221 -20.92808 -20.54594 -20.29348 -20.01962 -17.99004 -17.19508 -16.94297 -16.42659 -16.18670 -16.02272 -15.62619 -15.34438 -14.85900 -14.42499 -14.25450 -14.09786 -13.82831 -13.51282 -13.20978 -13.10054 -12.75854 -12.74116 -12.45750 -12.38789 -12.13126 -11.98758 -11.90218 -11.57873 -11.32008 -11.14061 -10.99905 -10.94175 -10.86514 -10.19887 -10.03162 -10.01645 -9.93944 -9.90116 -9.39721 -9.36769 -8.96838 -8.69287 -6.96701 -5.80873 -3.15687 2.40750 2.56397 2.68064 3.34245 3.36703 3.42134 3.44365 4.36029 4.38274 4.45193 4.55633 4.59195 4.63108 4.97846 5.04446 5.08687 5.13603 5.15597 5.17756 5.28490 5.38654 5.49659 5.51526 5.56534 5.59169 5.65262 5.74457 5.75541 5.92973 5.98567 6.03082 6.04974 6.10941 6.39496 6.53118 6.76990 7.26847 7.28147 7.41215 7.49086 7.69072 7.99122 8.05338 8.11254 8.17137 9.10386 9.70370 10.32792 11.30960 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002376 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.882510 B =11783.179734 C =12591.001139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.110 4.110 4 H 0.099 0.901 5 C -0.148 4.148 6 C 0.519 3.481 7 O -0.544 6.544 8 N -0.717 5.717 9 C 0.099 3.901 10 C 0.508 3.492 11 O -0.537 6.537 12 N -0.708 5.708 13 C 0.138 3.862 14 H 0.105 0.895 15 C 0.130 3.870 16 N -0.600 5.600 17 C -0.229 4.229 18 H 0.082 0.918 19 C -0.008 4.008 20 N -0.924 5.924 21 Si 0.916 3.084 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.153 3.847 26 C 0.068 3.932 27 H 0.059 0.941 28 O -0.563 6.563 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.413 0.587 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.401 0.599 41 H 0.024 0.976 42 H 0.051 0.949 43 H 0.253 0.747 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.475 -16.515 2.981 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.131 4.131 4 H 0.117 0.883 5 C -0.206 4.206 6 C 0.305 3.695 7 O -0.421 6.421 8 N -0.372 5.372 9 C -0.028 4.028 10 C 0.293 3.707 11 O -0.414 6.414 12 N -0.359 5.359 13 C 0.033 3.967 14 H 0.123 0.877 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.746 3.254 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.077 0.923 28 O -0.368 6.368 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.251 0.749 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.235 0.765 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.088 -16.412 2.814 22.470 hybrid contribution 1.134 0.884 -0.422 1.499 sum -13.953 -15.528 2.391 21.013 Atomic orbital electron populations 1.21849 0.95433 1.01907 1.01963 1.21345 0.95383 0.94053 1.03514 1.21348 0.91285 0.99565 1.00891 0.88321 1.21857 1.02471 1.00565 0.95662 1.20725 0.90176 0.83085 0.75476 1.90699 1.70365 1.31418 1.49588 1.45766 1.06448 1.10037 1.74959 1.21066 0.82452 0.94638 1.04655 1.20425 0.82985 0.90789 0.76453 1.90713 1.55145 1.45930 1.49597 1.45831 1.06884 1.09411 1.73741 1.22314 0.95086 0.81516 0.97799 0.87690 1.21851 0.93490 0.91781 0.92586 1.44260 1.38953 1.27991 1.21571 1.19130 1.15591 1.01315 0.99621 0.90063 1.24830 0.98524 0.99205 0.97864 1.69927 1.25414 1.36804 1.24973 0.85983 0.77642 0.81805 0.79970 1.20399 1.21635 1.21691 1.21828 0.95241 0.92630 0.87533 1.23455 0.95310 0.99342 0.81083 0.92336 1.86461 1.34811 1.96260 1.19313 0.92357 0.92464 0.92670 0.91122 0.91274 0.91981 0.91037 0.91807 0.74895 0.88394 0.88336 0.76518 0.95807 0.93105 0.93653 0.92064 0.93227 0.77547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.11 -0.82 4.75 -26.73 -0.13 -0.95 16 3 C -0.11 -0.87 2.72 -91.77 -0.25 -1.12 16 4 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 5 C -0.15 -1.01 8.85 37.16 0.33 -0.68 16 6 C 0.52 5.69 7.15 -10.99 -0.08 5.61 16 7 O -0.54 -7.66 15.92 5.55 0.09 -7.57 16 8 N -0.72 -7.65 5.42 -61.47 -0.33 -7.98 16 9 C 0.10 1.06 6.15 -5.19 -0.03 1.03 16 10 C 0.51 6.94 7.90 -10.98 -0.09 6.85 16 11 O -0.54 -9.20 15.36 5.56 0.09 -9.12 16 12 N -0.71 -9.60 5.21 -51.73 -0.27 -9.87 16 13 C 0.14 2.47 3.09 -65.78 -0.20 2.26 16 14 H 0.11 2.18 7.64 -51.92 -0.40 1.78 16 15 C 0.13 2.69 6.93 -2.51 -0.02 2.67 16 16 N -0.60 -15.03 3.40 -170.03 -0.58 -15.61 16 17 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -26.46 10.31 55.49 0.57 -25.88 16 21 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.15 3.54 5.15 -3.06 -0.02 3.53 16 26 C 0.07 1.20 3.97 -24.90 -0.10 1.10 16 27 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 28 O -0.56 -9.34 13.39 -35.23 -0.47 -9.82 16 29 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.63 7.95 -51.93 -0.41 0.21 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.07 0.38 6.56 -51.93 -0.34 0.04 16 36 H 0.06 0.44 7.56 -51.93 -0.39 0.04 16 37 H 0.41 4.30 6.86 -40.82 -0.28 4.02 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.40 4.18 8.54 -40.82 -0.35 3.83 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.61 7.30 -51.93 -0.38 1.23 16 45 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 46 H 0.38 4.71 9.12 45.56 0.42 5.13 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -34.13 374.99 -7.38 -41.51 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.63 Total: 8.84 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -0.47 Total: 13.01 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.61 Total: -59.34 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.30 Total: -26.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.13 -7.38 -41.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198744242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.417 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds