Wall clock time and date at job start Fri Apr 10 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.53001 * 109.47242 * 295.00551 * 3 2 1 6 6 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 7 7 O 1.21287 * 119.99375 * 359.97438 * 6 3 2 8 8 N 1.34768 * 120.00550 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99870 * 180.02562 * 8 6 3 10 10 C 1.50703 * 109.46901 * 179.97438 * 9 8 6 11 11 O 1.21282 * 120.00069 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00149 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00267 * 180.02562 * 12 10 9 14 14 H 1.09008 * 110.88747 * 34.29286 * 13 12 10 15 15 C 1.54913 * 111.00536 * 270.41879 * 13 12 10 16 16 N 1.47461 * 104.81374 * 204.95000 * 15 13 12 17 17 C 1.36936 * 125.63189 * 204.04654 * 16 15 13 18 18 H 1.07997 * 119.99573 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00105 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00366 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99971 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46827 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46959 * 119.99964 * 21 19 17 24 24 H 1.48494 * 109.47039 * 239.99903 * 21 19 17 25 25 C 1.47031 * 108.72222 * 24.06620 * 16 15 13 26 26 C 1.54329 * 107.26908 * 358.97653 * 25 16 15 27 27 H 1.08990 * 110.71843 * 96.17207 * 26 25 16 28 28 O 1.42900 * 110.71824 * 219.44621 * 26 25 16 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.09008 * 109.46731 * 299.99706 * 5 3 2 35 35 H 1.08998 * 109.47430 * 59.99652 * 5 3 2 36 36 H 1.08996 * 109.47271 * 180.02562 * 5 3 2 37 37 H 0.97005 * 120.00103 * 359.97438 * 8 6 3 38 38 H 1.09000 * 109.47148 * 299.99056 * 9 8 6 39 39 H 1.08998 * 109.47345 * 59.99868 * 9 8 6 40 40 H 0.96996 * 119.99797 * 359.97438 * 12 10 9 41 41 H 1.09006 * 110.36187 * 323.75127 * 15 13 12 42 42 H 1.09000 * 110.36819 * 86.07305 * 15 13 12 43 43 H 0.96997 * 120.00313 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.87753 * 239.55893 * 25 16 15 45 45 H 1.08993 * 110.00783 * 118.46620 * 25 16 15 46 46 H 0.96707 * 113.99863 * 293.52199 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4445 0.1238 7 8 4.1450 0.3953 0.2046 8 7 4.2148 2.6119 0.1457 9 6 5.6749 2.6136 0.2655 10 6 6.1772 4.0345 0.2656 11 8 5.3928 4.9550 0.1742 12 7 7.4982 4.2823 0.3663 13 6 7.9864 5.6635 0.3670 14 1 7.2790 6.3256 0.8665 15 6 8.2790 6.1498 -1.0744 16 7 9.2832 7.2179 -0.9154 17 6 9.5099 8.2378 -1.8006 18 1 8.9270 8.3055 -2.7072 19 6 10.4889 9.1847 -1.5326 20 7 11.1997 9.1019 -0.4279 21 14 10.7987 10.5756 -2.7404 22 1 9.8741 10.4436 -3.8950 23 1 10.5650 11.8779 -2.0662 24 1 12.2026 10.5113 -3.2199 25 6 10.0008 7.0064 0.3503 26 6 9.3910 5.7565 1.0194 27 1 9.9819 4.8697 0.7907 28 8 9.2811 5.9422 2.4320 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0698 1.5875 -2.1492 35 1 0.5488 2.1253 -1.3968 36 1 1.9988 3.1541 -1.3075 37 1 3.7324 3.4511 0.0815 38 1 5.9637 2.1258 1.1965 39 1 6.1092 2.0752 -0.5768 40 1 8.1255 3.5461 0.4391 41 1 8.6842 5.3350 -1.6746 42 1 7.3726 6.5453 -1.5327 43 1 11.8836 9.7637 -0.2404 44 1 9.8729 7.8735 0.9983 45 1 11.0606 6.8427 0.1552 46 1 10.1317 6.0065 2.8876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198744242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:11 Heat of formation + Delta-G solvation = -135.244496 kcal Electronic energy + Delta-G solvation = -26162.201408 eV Core-core repulsion = 22279.023834 eV Total energy + Delta-G solvation = -3883.177573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47597 -40.67339 -39.41848 -36.68783 -36.41389 -35.77441 -35.45723 -33.67690 -31.14503 -30.33338 -29.22901 -28.08029 -26.35792 -25.89761 -22.92963 -22.39986 -21.98066 -21.61723 -20.86138 -19.20554 -18.74311 -18.31165 -17.59114 -17.23360 -17.09252 -16.92449 -16.36677 -16.19798 -15.79127 -15.57321 -15.20958 -14.87902 -14.48760 -14.45260 -14.33745 -14.26594 -13.85026 -13.75299 -13.44713 -13.17605 -13.11458 -12.95564 -12.78408 -12.74776 -12.55026 -12.50602 -12.06856 -11.90611 -11.70479 -11.57033 -11.55756 -11.27070 -10.91691 -10.82028 -10.79086 -10.32331 -10.16667 -8.98352 -7.90341 -5.27455 1.42610 1.45512 1.46397 1.56541 1.59069 1.68378 2.35824 2.47607 3.10994 3.30418 3.49365 3.52798 3.70124 3.86112 3.89657 3.99901 4.04684 4.18246 4.30984 4.32028 4.43685 4.44126 4.54425 4.54518 4.64144 4.74816 4.81192 4.94910 4.97367 5.04379 5.13506 5.19858 5.26894 5.34970 5.38585 5.39234 5.43565 5.52503 5.65797 6.12293 6.39629 6.44376 6.85555 7.03238 7.08182 7.14612 7.68033 8.29815 9.19510 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002376 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.882510 B =11783.179734 C =12591.001139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.106 4.106 4 H 0.116 0.884 5 C -0.145 4.145 6 C 0.517 3.483 7 O -0.578 6.578 8 N -0.716 5.716 9 C 0.107 3.893 10 C 0.512 3.488 11 O -0.573 6.573 12 N -0.695 5.695 13 C 0.154 3.846 14 H 0.075 0.925 15 C 0.131 3.869 16 N -0.623 5.623 17 C -0.245 4.245 18 H 0.082 0.918 19 C -0.063 4.063 20 N -0.948 5.948 21 Si 0.980 3.020 22 H -0.267 1.267 23 H -0.293 1.293 24 H -0.288 1.288 25 C 0.160 3.840 26 C 0.090 3.910 27 H 0.097 0.903 28 O -0.569 6.569 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.415 0.585 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.420 0.580 41 H 0.043 0.957 42 H 0.036 0.964 43 H 0.249 0.751 44 H 0.020 0.980 45 H 0.026 0.974 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 -17.874 2.778 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.127 4.127 4 H 0.134 0.866 5 C -0.202 4.202 6 C 0.305 3.695 7 O -0.457 6.457 8 N -0.371 5.371 9 C -0.020 4.020 10 C 0.299 3.701 11 O -0.452 6.452 12 N -0.347 5.347 13 C 0.048 3.952 14 H 0.093 0.907 15 C 0.004 3.996 16 N -0.350 5.350 17 C -0.374 4.374 18 H 0.100 0.900 19 C -0.256 4.256 20 N -0.597 5.597 21 Si 0.808 3.192 22 H -0.191 1.191 23 H -0.220 1.220 24 H -0.215 1.215 25 C 0.034 3.966 26 C 0.030 3.970 27 H 0.114 0.886 28 O -0.377 6.377 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.253 0.747 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.258 0.742 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.044 0.956 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.059 -17.815 2.619 24.127 hybrid contribution 1.411 1.297 -0.341 1.947 sum -14.647 -16.518 2.278 22.194 Atomic orbital electron populations 1.21823 0.93685 1.02451 1.02759 1.21318 0.96838 0.93717 1.02266 1.21407 0.89112 0.99995 1.02182 0.86625 1.21854 1.03628 1.00148 0.94606 1.21254 0.91333 0.82414 0.74451 1.90683 1.71268 1.32481 1.51287 1.45831 1.06518 1.10158 1.74615 1.21076 0.82580 0.92225 1.06120 1.20912 0.82447 0.91652 0.75114 1.90708 1.56044 1.47387 1.51062 1.45566 1.07476 1.08099 1.73566 1.21753 0.94636 0.83308 0.95538 0.90682 1.21956 0.91920 0.91104 0.94632 1.44533 1.40169 1.28523 1.21807 1.19470 1.15477 1.02236 1.00192 0.90017 1.25660 0.98671 1.01635 0.99683 1.70129 1.25773 1.37379 1.26430 0.84984 0.77500 0.78485 0.78190 1.19147 1.21958 1.21503 1.21633 0.94397 0.93846 0.86689 1.23154 0.94841 0.97764 0.81229 0.88579 1.86428 1.36622 1.96139 1.18467 0.91449 0.92131 0.91924 0.92505 0.92456 0.92727 0.89201 0.91851 0.74665 0.86783 0.86823 0.74188 0.93892 0.94557 0.94153 0.96167 0.95611 0.75307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 71.98 0.70 -0.76 16 2 C -0.10 -1.50 4.75 30.59 0.15 -1.36 16 3 C -0.11 -1.51 2.72 -11.54 -0.03 -1.54 16 4 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 5 C -0.14 -1.71 8.85 71.98 0.64 -1.07 16 6 C 0.52 10.65 7.15 87.66 0.63 11.28 16 7 O -0.58 -15.71 15.92 -3.05 -0.05 -15.76 16 8 N -0.72 -14.14 5.42 -466.78 -2.53 -16.67 16 9 C 0.11 2.04 6.15 85.63 0.53 2.57 16 10 C 0.51 13.08 7.90 87.66 0.69 13.77 16 11 O -0.57 -19.21 15.36 -3.04 -0.05 -19.26 16 12 N -0.70 -17.26 5.21 -435.96 -2.27 -19.53 16 13 C 0.15 5.37 3.09 46.38 0.14 5.51 16 14 H 0.08 3.12 7.64 -2.38 -0.02 3.10 16 15 C 0.13 5.33 6.93 86.85 0.60 5.94 16 16 N -0.62 -31.63 3.40 -691.86 -2.35 -33.98 16 17 C -0.25 -13.71 10.28 84.03 0.86 -12.84 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 20 N -0.95 -55.74 10.31 21.65 0.22 -55.51 16 21 Si 0.98 45.44 29.55 68.60 2.03 47.46 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 25 C 0.16 7.53 5.15 86.73 0.45 7.98 16 26 C 0.09 3.06 3.97 31.78 0.13 3.19 16 27 H 0.10 2.61 8.00 -2.39 -0.02 2.59 16 28 O -0.57 -17.93 13.39 -148.98 -1.99 -19.93 16 29 H 0.07 0.54 6.56 -2.39 -0.02 0.52 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.98 7.95 -2.39 -0.02 0.96 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.09 0.74 6.56 -2.39 -0.02 0.72 16 36 H 0.06 0.76 7.56 -2.39 -0.02 0.74 16 37 H 0.41 8.08 6.86 -92.70 -0.64 7.45 16 38 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.42 7.30 8.54 -92.71 -0.79 6.51 16 41 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.02 1.10 7.30 -2.38 -0.02 1.08 16 45 H 0.03 1.31 7.50 -2.39 -0.02 1.30 16 46 H 0.40 9.17 9.12 -74.05 -0.68 8.50 16 Total: -1.00 -75.76 374.99 -2.14 -77.90 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -1.09 Total: 25.71 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: 5.94 Total: 29.57 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -6.93 Total: -125.69 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -2.09 Total: -54.94 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -75.76 -2.14 -77.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198744242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.345 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds