Wall clock time and date at job start Fri Apr 10 2020 18:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00141 * 2 1 4 4 H 1.08999 * 109.46760 * 329.99889 * 3 2 1 5 5 C 1.52999 * 109.47177 * 89.99803 * 3 2 1 6 6 C 1.50698 * 109.47045 * 210.00056 * 3 2 1 7 7 O 1.21278 * 120.00125 * 344.40834 * 6 3 2 8 8 N 1.34782 * 119.99837 * 164.40533 * 6 3 2 9 9 C 1.46920 * 120.63117 * 4.11982 * 8 6 3 10 10 C 1.53625 * 108.54517 * 126.36588 * 9 8 6 11 11 C 1.53038 * 109.23875 * 54.85675 * 10 9 8 12 12 N 1.46900 * 109.46259 * 178.49051 * 11 10 9 13 13 C 1.46898 * 111.00152 * 275.06905 * 12 11 10 14 14 C 1.50701 * 109.47110 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00151 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99624 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99418 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00742 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99710 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00074 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00077 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46960 * 90.00364 * 21 19 17 23 23 H 1.48497 * 109.46911 * 210.00215 * 21 19 17 24 24 H 1.48496 * 109.46951 * 330.00056 * 21 19 17 25 25 C 1.53042 * 109.53923 * 298.51126 * 11 10 9 26 26 C 1.46924 * 120.62817 * 184.39967 * 8 6 3 27 27 H 1.08994 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47070 * 300.00261 * 1 2 3 29 29 H 1.09008 * 109.47289 * 59.99846 * 1 2 3 30 30 H 1.08999 * 109.46955 * 181.44231 * 5 3 2 31 31 H 1.08999 * 109.47075 * 301.44878 * 5 3 2 32 32 H 1.09002 * 109.46589 * 61.44648 * 5 3 2 33 33 H 1.08994 * 109.58752 * 246.20198 * 9 8 6 34 34 H 1.09008 * 109.58838 * 6.62478 * 9 8 6 35 35 H 1.08992 * 109.63386 * 294.86988 * 10 9 8 36 36 H 1.09000 * 109.43376 * 174.72395 * 10 9 8 37 37 H 1.09006 * 109.45031 * 58.52483 * 11 10 9 38 38 H 1.00902 * 111.00058 * 151.11503 * 12 11 10 39 39 H 1.09000 * 109.46897 * 299.99992 * 13 12 11 40 40 H 1.09006 * 109.47046 * 59.99511 * 13 12 11 41 41 H 0.97000 * 120.00314 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00140 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.49762 * 301.41808 * 25 11 10 44 44 H 1.09004 * 109.49762 * 181.31370 * 25 11 10 45 45 H 1.08999 * 109.58751 * 353.37431 * 26 8 6 46 46 H 1.09000 * 109.58786 * 113.65863 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3386 1.2638 -0.7104 7 8 3.8809 0.1996 -0.9204 8 7 3.9240 2.4094 -1.1125 9 6 3.3247 3.7107 -0.7867 10 6 4.3869 4.5781 -0.0943 11 6 5.6277 4.6636 -0.9860 12 7 6.6330 5.5217 -0.3449 13 6 6.3900 6.9374 -0.6524 14 6 7.4382 7.7849 0.0214 15 8 8.3024 7.2612 0.6921 16 7 7.4147 9.1250 -0.1207 17 6 8.3687 9.8960 0.4919 18 1 9.1392 9.4295 1.0878 19 6 8.3448 11.2775 0.3451 20 7 7.4076 11.8451 -0.3805 21 14 9.6442 12.3281 1.1802 22 1 10.8031 12.5001 0.2678 23 1 9.0702 13.6580 1.5074 24 1 10.0921 11.6614 2.4292 25 6 6.2088 3.2625 -1.1901 26 6 5.1703 2.3803 -1.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 2.6373 2.7773 1.4425 31 1 1.2604 1.7768 1.9637 32 1 2.9032 1.0917 1.9487 33 1 2.9906 4.1986 -1.7023 34 1 2.4767 3.5652 -0.1174 35 1 4.6568 4.1322 0.8629 36 1 3.9872 5.5788 0.0697 37 1 5.3520 5.0866 -1.9520 38 1 7.5663 5.2483 -0.6138 39 1 6.4381 7.0884 -1.7308 40 1 5.4029 7.2239 -0.2892 41 1 6.7234 9.5439 -0.6568 42 1 7.3912 12.8095 -0.4833 43 1 6.4615 2.8290 -0.2225 44 1 7.1058 3.3269 -1.8060 45 1 5.5404 1.3568 -1.9490 46 1 4.9831 2.7597 -2.8947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199545282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:18 Heat of formation + Delta-G solvation = -111.302384 kcal Electronic energy + Delta-G solvation = -26299.252864 eV Core-core repulsion = 22417.113499 eV Total energy + Delta-G solvation = -3882.139365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71975 -38.76541 -38.11538 -37.36202 -35.17806 -33.90012 -32.69587 -31.32587 -31.01039 -30.75658 -27.24394 -26.97371 -25.14435 -24.06912 -23.79833 -22.64144 -20.90187 -19.45090 -19.08329 -17.93091 -17.87366 -17.05171 -16.32997 -15.96265 -15.75709 -15.36750 -15.17195 -14.97878 -14.77746 -14.53418 -14.10869 -14.00264 -13.83578 -13.59275 -13.44077 -13.06223 -12.90876 -12.59972 -12.33863 -12.22511 -12.17389 -12.03478 -11.63551 -11.56050 -11.45187 -11.38698 -11.08003 -10.92115 -10.57156 -10.41136 -10.32445 -10.23803 -9.72966 -9.53275 -8.93733 -8.48267 -8.11463 -7.98481 -6.44127 -3.84912 2.32973 2.44272 3.16142 3.24990 3.31041 3.49259 3.87987 4.02027 4.11306 4.25113 4.40489 4.51698 4.60163 4.64193 4.82700 4.89042 4.95440 4.96240 5.05013 5.11856 5.16342 5.21605 5.27244 5.27286 5.29431 5.35129 5.43192 5.57756 5.66290 5.72998 5.76305 5.82338 5.92647 6.01579 6.15414 6.22984 6.29012 6.63604 7.09544 7.20089 7.53094 7.62131 7.91556 8.04053 8.58813 9.15682 9.51797 10.03264 10.73578 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.002179 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.844376 B =12849.663642 C =13215.554733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.071 3.929 4 H 0.084 0.916 5 C -0.176 4.176 6 C 0.518 3.482 7 O -0.522 6.522 8 N -0.609 5.609 9 C 0.099 3.901 10 C -0.124 4.124 11 C 0.088 3.912 12 N -0.665 5.665 13 C 0.051 3.949 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.136 4.136 26 C 0.116 3.884 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.351 0.649 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.754 -16.566 -3.565 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.279 6.279 3 C 0.009 3.991 4 H 0.102 0.898 5 C -0.233 4.233 6 C 0.305 3.695 7 O -0.397 6.397 8 N -0.345 5.345 9 C -0.024 4.024 10 C -0.163 4.163 11 C -0.022 4.022 12 N -0.298 5.298 13 C -0.081 4.081 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.174 4.174 26 C -0.006 4.006 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.172 0.828 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.118 -17.441 -2.657 23.234 hybrid contribution 0.173 1.401 -0.879 1.663 sum -14.945 -16.040 -3.536 22.207 Atomic orbital electron populations 1.22895 0.80565 1.03304 1.00099 1.88053 1.19678 1.25208 1.94970 1.21951 0.93405 0.86693 0.97021 0.89822 1.22340 1.03699 1.02626 0.94684 1.20363 0.86656 0.83722 0.78761 1.90706 1.64487 1.29373 1.55124 1.48075 1.25609 1.05769 1.55039 1.22085 0.96544 0.83232 1.00546 1.22027 0.94487 1.00090 0.99710 1.21474 0.92916 0.92529 0.95282 1.60078 1.06318 1.01199 1.62183 1.21719 0.99761 0.88819 0.97847 1.19820 0.88123 0.83099 0.86415 1.90527 1.39685 1.72521 1.43950 1.41869 1.28089 1.04544 1.45567 1.19704 1.07488 0.88109 1.27565 0.87924 1.25266 0.98120 0.97174 0.97419 1.69609 1.33399 1.11652 1.39690 0.85853 0.80060 0.78765 0.79601 1.20425 1.20918 1.19391 1.22104 0.98045 0.94964 1.02323 1.21592 0.83314 1.01995 0.93728 0.89090 0.93690 0.93847 0.90215 0.91027 0.90816 0.90954 0.89365 0.90394 0.90277 0.93795 0.82840 0.93906 0.89702 0.77484 0.91874 0.90282 0.90469 0.88709 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.89 9.93 -54.64 -0.54 -4.43 16 3 C 0.07 0.64 2.28 -27.88 -0.06 0.57 16 4 H 0.08 0.53 6.92 -51.93 -0.36 0.17 16 5 C -0.18 -1.32 9.17 37.16 0.34 -0.98 16 6 C 0.52 6.15 7.00 -10.98 -0.08 6.07 16 7 O -0.52 -8.40 15.99 -13.85 -0.22 -8.62 16 8 N -0.61 -5.97 2.97 -172.51 -0.51 -6.48 16 9 C 0.10 0.74 5.72 -3.49 -0.02 0.72 16 10 C -0.12 -1.21 5.60 -26.39 -0.15 -1.36 16 11 C 0.09 0.98 2.45 -67.67 -0.17 0.82 16 12 N -0.66 -10.10 5.93 -107.94 -0.64 -10.74 16 13 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 14 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 15 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 16 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 17 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 21 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.14 -1.39 5.36 -26.61 -0.14 -1.53 16 26 C 0.12 1.13 6.44 -3.71 -0.02 1.11 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.22 7.84 -51.93 -0.41 -0.19 16 29 H 0.04 0.22 8.09 -51.92 -0.42 -0.20 16 30 H 0.08 0.53 6.07 -51.93 -0.32 0.21 16 31 H 0.07 0.42 7.84 -51.93 -0.41 0.01 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.50 4.34 -51.92 -0.23 0.28 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.76 7.42 -51.93 -0.39 0.38 16 37 H 0.04 0.46 7.80 -51.93 -0.40 0.06 16 38 H 0.35 5.61 8.03 -39.29 -0.32 5.29 16 39 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 40 H 0.08 1.29 7.41 -51.93 -0.38 0.90 16 41 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.09 1.05 7.00 -51.93 -0.36 0.68 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -34.53 370.74 -7.36 -41.89 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.20 Total: 10.47 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 0.44 Total: 9.67 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.49 Total: -54.85 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.68 Total: -28.62 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.53 -7.36 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199545282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.415 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds