Wall clock time and date at job start Fri Apr 10 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47136 * 2 1 4 4 O 1.21284 * 119.99821 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00440 * 179.97438 * 3 2 1 6 6 C 1.47509 * 118.75603 * 0.02562 * 5 3 2 7 7 C 1.53578 * 111.02812 * 138.37170 * 6 5 3 8 8 C 1.51535 * 109.57967 * 320.02209 * 7 6 5 9 9 O 1.42154 * 108.76375 * 91.39862 * 8 7 6 10 10 C 1.38007 * 119.43819 * 272.77886 * 9 8 7 11 11 H 1.09002 * 109.47027 * 303.42493 * 10 9 8 12 12 C 1.53000 * 109.47207 * 183.42564 * 10 9 8 13 13 N 1.46901 * 109.46769 * 64.99377 * 12 10 9 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47183 * 180.02562 * 14 13 12 16 16 O 1.21298 * 119.99556 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00297 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00235 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00174 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99846 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99973 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00170 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47524 * 89.99660 * 22 20 18 24 24 H 1.48505 * 109.46910 * 209.99760 * 22 20 18 25 25 H 1.48502 * 109.46948 * 329.99402 * 22 20 18 26 26 C 1.45117 * 118.76248 * 180.02562 * 5 3 2 27 27 H 1.08997 * 109.47318 * 299.99835 * 1 2 3 28 28 H 1.09003 * 109.47407 * 60.00158 * 1 2 3 29 29 H 1.08999 * 109.46676 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47613 * 240.00617 * 2 1 3 31 31 H 1.08997 * 109.47143 * 120.00200 * 2 1 3 32 32 H 1.09000 * 109.16812 * 17.97077 * 6 5 3 33 33 H 1.08995 * 109.16853 * 258.77083 * 6 5 3 34 34 H 1.09004 * 109.45263 * 199.98830 * 7 6 5 35 35 H 1.08993 * 109.45052 * 80.05336 * 7 6 5 36 36 H 1.08999 * 109.58616 * 331.61506 * 8 7 6 37 37 H 1.08998 * 109.70825 * 211.25663 * 8 7 6 38 38 H 1.09002 * 109.47398 * 184.99672 * 12 10 9 39 39 H 1.09001 * 109.47194 * 304.99853 * 12 10 9 40 40 H 1.00899 * 111.00283 * 303.95539 * 13 12 10 41 41 H 1.08995 * 109.47087 * 299.99901 * 14 13 12 42 42 H 1.09002 * 109.46903 * 59.99922 * 14 13 12 43 43 H 0.97000 * 119.99683 * 0.02562 * 17 15 14 44 44 H 0.96999 * 120.00403 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.46170 * 149.27433 * 26 5 3 46 46 H 1.09001 * 109.46364 * 29.31267 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 4.2914 0.5255 0.0005 7 6 5.4700 0.7778 -0.9513 8 6 4.9689 1.4518 -2.2126 9 8 5.0467 2.8607 -2.0400 10 6 3.9909 3.5321 -1.4576 11 1 3.0792 3.3342 -2.0213 12 6 4.2773 5.0350 -1.4622 13 7 4.3290 5.5193 -2.8482 14 6 4.6034 6.9618 -2.8919 15 6 4.6482 7.4214 -4.3264 16 8 4.4696 6.6254 -5.2240 17 7 4.8878 8.7166 -4.6119 18 6 4.9291 9.1346 -5.9169 19 1 4.7701 8.4259 -6.7163 20 6 5.1755 10.4700 -6.2112 21 7 5.2156 10.8706 -7.4621 22 14 5.4512 11.6956 -4.8287 23 1 6.8988 11.7577 -4.5035 24 1 4.9820 13.0381 -5.2565 25 1 4.6919 11.2655 -3.6272 26 6 3.8113 3.0455 0.0011 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.7602 -0.3715 -0.3176 33 1 4.6729 0.3752 1.0104 34 1 5.9384 -0.1722 -1.2089 35 1 6.2007 1.4214 -0.4616 36 1 3.9339 1.1626 -2.3949 37 1 5.5865 1.1527 -3.0594 38 1 3.4864 5.5573 -0.9240 39 1 5.2341 5.2240 -0.9755 40 1 5.0109 5.0054 -3.3857 41 1 3.8150 7.4978 -2.3635 42 1 5.5626 7.1638 -2.4150 43 1 5.0317 9.3528 -3.8940 44 1 5.3872 11.8029 -7.6676 45 1 4.7639 3.1140 0.5265 46 1 3.0736 3.6707 0.5042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199599502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:27 Heat of formation + Delta-G solvation = -135.861479 kcal Electronic energy + Delta-G solvation = -26501.755002 eV Core-core repulsion = 22618.550674 eV Total energy + Delta-G solvation = -3883.204327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67737 -40.33871 -39.73346 -37.07339 -36.35320 -35.87922 -34.16703 -33.76031 -33.46611 -30.87917 -28.94359 -27.54335 -26.53481 -25.34474 -23.86229 -22.71984 -22.28983 -21.31190 -20.29464 -19.86206 -18.48809 -18.14125 -17.75793 -17.36798 -17.18046 -16.90206 -16.54859 -16.33288 -15.73626 -15.51406 -15.16760 -15.04767 -14.92855 -14.66377 -14.46787 -14.22306 -14.04861 -13.78710 -13.41374 -13.15872 -13.14621 -13.06002 -12.82287 -12.75824 -12.58550 -12.42440 -12.25377 -12.13376 -11.98767 -11.95367 -11.54528 -11.52584 -10.84930 -10.60245 -10.46877 -10.26422 -9.65384 -9.35317 -8.42233 -6.03487 1.30291 1.35230 1.44613 1.56785 1.93608 1.95514 2.22690 2.66007 2.70384 3.13867 3.35608 3.51840 3.80293 3.90893 3.97176 4.05109 4.09987 4.15251 4.18119 4.26061 4.28457 4.39623 4.43110 4.46240 4.51583 4.60840 4.65769 4.72728 4.78211 4.85381 4.95356 4.96705 5.02527 5.11187 5.17476 5.31986 5.51309 5.55528 5.88095 6.01788 6.27295 6.34985 6.58719 6.65215 6.86416 7.14083 7.37886 7.94701 8.75517 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.002405 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.413663 B =11641.711350 C =11953.161564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.494 3.506 4 O -0.587 6.587 5 N -0.612 5.612 6 C 0.099 3.901 7 C -0.157 4.157 8 C 0.067 3.933 9 O -0.401 6.401 10 C 0.104 3.896 11 H 0.025 0.975 12 C 0.075 3.925 13 N -0.689 5.689 14 C 0.062 3.938 15 C 0.448 3.552 16 O -0.616 6.616 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.232 1.232 26 C 0.088 3.912 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.348 0.652 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.391 0.609 44 H 0.280 0.720 45 H 0.103 0.897 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.598 -24.069 25.270 34.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.284 3.716 4 O -0.467 6.467 5 N -0.345 5.345 6 C -0.022 4.022 7 C -0.195 4.195 8 C -0.009 4.009 9 O -0.320 6.320 10 C 0.044 3.956 11 H 0.043 0.957 12 C -0.054 4.054 13 N -0.321 5.321 14 C -0.070 4.070 15 C 0.236 3.764 16 O -0.500 6.500 17 N -0.231 5.231 18 C -0.460 4.460 19 H 0.072 0.928 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.155 1.155 26 C -0.036 4.036 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.408 -23.813 24.431 34.119 hybrid contribution 0.657 1.066 -0.017 1.253 sum 0.249 -22.747 24.413 33.369 Atomic orbital electron populations 1.21553 0.93905 1.02643 1.01596 1.21766 0.97881 0.91514 1.06486 1.21735 0.81998 0.93223 0.74652 1.90706 1.56205 1.48440 1.51313 1.48106 1.06354 1.07139 1.72864 1.22339 0.90662 0.87735 1.01447 1.22433 0.98142 1.03442 0.95526 1.22372 1.00711 0.79099 0.98724 1.86216 1.42734 1.22076 1.80971 1.21815 0.89084 0.91775 0.92972 0.95737 1.21973 1.02072 0.92294 0.89096 1.60034 1.56869 1.02516 1.12723 1.21646 1.03085 0.90530 0.91780 1.20978 0.81096 0.82089 0.92267 1.90543 1.54644 1.54517 1.50344 1.42015 1.65546 1.08689 1.06899 1.19010 1.48440 0.94903 0.83598 0.92829 1.26153 0.96171 0.98982 1.00159 1.69806 1.49221 1.18227 1.20211 0.85336 0.80128 0.77491 0.78382 1.17913 1.19918 1.15530 1.22166 1.01685 0.83186 0.96595 0.93465 0.94323 0.89405 0.86724 0.85805 0.87197 0.89078 0.86473 0.90463 0.94068 0.88531 0.88770 0.92415 0.83360 0.86835 0.90111 0.77375 0.91084 0.87915 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.20 71.98 0.66 -1.24 16 2 C -0.14 -1.42 4.76 29.85 0.14 -1.28 16 3 C 0.49 9.72 7.63 87.66 0.67 10.39 16 4 O -0.59 -17.68 15.41 -3.04 -0.05 -17.73 16 5 N -0.61 -9.55 2.19 -817.95 -1.79 -11.35 16 6 C 0.10 0.68 6.00 86.38 0.52 1.19 16 7 C -0.16 -1.31 5.79 30.31 0.18 -1.13 16 8 C 0.07 1.10 6.37 71.50 0.46 1.55 16 9 O -0.40 -9.44 8.98 -117.77 -1.06 -10.50 16 10 C 0.10 2.53 2.88 31.21 0.09 2.62 16 11 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 12 C 0.07 1.85 5.39 86.30 0.46 2.32 16 13 N -0.69 -23.27 6.13 -517.91 -3.17 -26.44 16 14 C 0.06 2.06 6.17 85.56 0.53 2.59 16 15 C 0.45 21.50 7.82 87.66 0.69 22.18 16 16 O -0.62 -36.31 15.78 -3.08 -0.05 -36.36 16 17 N -0.59 -29.04 5.09 -306.99 -1.56 -30.60 16 18 C -0.33 -20.01 10.16 84.04 0.85 -19.16 16 19 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 20 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 21 N -0.93 -57.49 13.96 21.66 0.30 -57.18 16 22 Si 0.97 39.70 27.74 68.60 1.90 41.60 16 23 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 26 C 0.09 1.65 4.86 87.26 0.42 2.08 16 27 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 28 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.71 7.41 -2.38 -0.02 0.69 16 31 H 0.12 0.52 8.04 -2.39 -0.02 0.50 16 32 H 0.11 0.24 5.88 -2.39 -0.01 0.22 16 33 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.08 0.77 8.01 -2.39 -0.02 0.75 16 36 H 0.04 0.74 7.40 -2.39 -0.02 0.72 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.35 12.88 7.99 -89.69 -0.72 12.16 16 41 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.39 15.84 5.76 -92.71 -0.53 15.31 16 44 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.10 1.48 8.11 -2.38 -0.02 1.46 16 46 H 0.08 1.73 7.27 -2.39 -0.02 1.71 16 Total: -1.00 -88.33 369.57 0.34 -87.99 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.32 Total: 38.92 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.14 Total: 21.65 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -6.22 Total: -125.57 kcal Atomic # 8 Polarization: -63.44 SS G_CDS: -1.15 Total: -64.59 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.90 Total: 41.60 kcal Total: -88.33 0.34 -87.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199599502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.874 kcal (2) G-P(sol) polarization free energy of solvation -88.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds