Wall clock time and date at job start Fri Apr 10 2020 18:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 O 1.21282 * 120.00011 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00369 * 180.02562 * 3 2 1 6 6 C 1.46505 * 120.00115 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.46848 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00232 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99945 * 180.02562 * 7 6 5 10 10 C 1.47503 * 118.75537 * 359.72876 * 9 7 6 11 11 C 1.53198 * 111.23939 * 221.51311 * 10 9 7 12 12 C 1.51533 * 109.43447 * 40.26559 * 11 10 9 13 13 O 1.42149 * 108.76591 * 268.50926 * 12 11 10 14 14 C 1.38014 * 119.43954 * 87.21016 * 13 12 11 15 15 H 1.09004 * 109.47003 * 56.58146 * 14 13 12 16 16 C 1.53001 * 109.47021 * 176.56921 * 14 13 12 17 17 N 1.46498 * 109.47225 * 300.01448 * 16 14 13 18 18 C 1.36939 * 120.00170 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99806 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00325 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00112 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99731 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47163 * 89.99826 * 22 20 18 24 24 H 1.48496 * 109.46890 * 209.99825 * 22 20 18 25 25 H 1.48499 * 109.46791 * 329.99793 * 22 20 18 26 26 C 1.45121 * 118.75857 * 180.02562 * 9 7 6 27 27 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 32 32 H 0.97003 * 119.99640 * 0.02562 * 5 3 2 33 33 H 1.09002 * 109.46801 * 299.99526 * 6 5 3 34 34 H 1.08992 * 109.46823 * 59.99976 * 6 5 3 35 35 H 1.09003 * 109.16615 * 342.03137 * 10 9 7 36 36 H 1.09002 * 109.16532 * 101.23534 * 10 9 7 37 37 H 1.09000 * 109.61104 * 280.22667 * 11 10 9 38 38 H 1.09001 * 109.43267 * 160.19425 * 11 10 9 39 39 H 1.08999 * 109.59605 * 148.71805 * 12 11 10 40 40 H 1.09008 * 109.58477 * 28.28695 * 12 11 10 41 41 H 1.09001 * 109.46827 * 60.01185 * 16 14 13 42 42 H 1.08999 * 109.47703 * 180.02562 * 16 14 13 43 43 H 0.96996 * 120.00112 * 359.97438 * 17 16 14 44 44 H 0.96993 * 119.99522 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.46240 * 210.72075 * 26 9 7 46 46 H 1.09007 * 109.45950 * 330.69621 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0483 0.0000 7 6 5.3528 3.0482 -0.0013 8 8 5.9592 1.9978 -0.0022 9 7 6.0267 4.2154 -0.0006 10 6 5.2617 5.4765 -0.0045 11 6 5.8911 6.5044 -0.9501 12 6 6.3578 5.8086 -2.2127 13 8 7.7122 5.4121 -2.0423 14 6 7.9940 4.1923 -1.4613 15 1 7.5028 3.3992 -2.0252 16 6 9.5065 3.9613 -1.4684 17 7 9.9953 3.9693 -2.8494 18 6 11.3273 3.7814 -3.1054 19 1 12.0176 3.6277 -2.2891 20 6 11.7904 3.7884 -4.4139 21 7 13.0709 3.6082 -4.6599 22 14 10.5966 4.0549 -5.8257 23 1 10.4914 5.5072 -6.1177 24 1 11.0890 3.3420 -7.0317 25 1 9.2602 3.5275 -5.4501 26 6 7.4776 4.1838 -0.0025 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.9878 0.9297 -0.0013 33 1 3.4821 3.5626 -0.8895 34 1 3.4829 3.5615 0.8905 35 1 4.2397 5.2741 -0.3251 36 1 5.2444 5.8877 1.0048 37 1 6.7421 6.9785 -0.4611 38 1 5.1509 7.2626 -1.2060 39 1 6.2810 6.4933 -3.0573 40 1 5.7399 4.9293 -2.3951 41 1 9.9977 4.7543 -0.9045 42 1 9.7291 2.9978 -1.0100 43 1 9.3754 4.1077 -3.5825 44 1 13.3943 3.6128 -5.5743 45 1 7.8606 5.0585 0.5232 46 1 7.8218 3.2792 0.4988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200123653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:56 Heat of formation + Delta-G solvation = -95.660769 kcal Electronic energy + Delta-G solvation = -26878.230683 eV Core-core repulsion = 22996.769589 eV Total energy + Delta-G solvation = -3881.461094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01938 -39.92452 -38.68435 -35.94943 -34.97219 -34.72385 -33.18453 -32.97101 -31.19746 -29.98994 -28.26285 -26.75264 -25.33297 -24.13249 -22.39629 -21.83974 -21.09514 -20.74069 -19.47202 -18.11245 -17.69324 -17.05602 -16.80285 -16.67299 -16.46365 -15.85786 -15.84568 -15.18866 -14.69536 -14.42197 -14.33515 -14.03435 -13.77715 -13.62573 -13.38267 -12.91459 -12.88777 -12.68845 -12.62028 -12.47070 -12.20191 -12.12459 -11.92263 -11.54411 -11.53652 -11.26409 -10.99648 -10.82853 -10.45031 -10.28491 -10.18278 -10.06016 -9.60620 -9.56121 -9.54811 -8.86476 -8.80144 -7.17372 -5.71958 -3.06464 2.15864 2.28617 2.37324 2.95593 3.42830 3.47208 3.49384 3.76207 3.94927 4.35657 4.42172 4.53500 4.65078 4.69228 4.69840 4.76010 4.86099 4.89319 5.01706 5.10935 5.17241 5.18725 5.28750 5.34855 5.42648 5.43464 5.55375 5.57788 5.64915 5.74615 5.81131 5.82295 5.90837 5.93285 5.96336 6.25363 6.53107 6.64636 6.90171 7.10587 7.71544 7.79604 7.83550 8.03944 8.47108 9.26786 9.99287 10.20015 11.46490 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.002977 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.770098 B = 9403.682086 C =10022.380457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.544 6.544 5 N -0.721 5.721 6 C 0.100 3.900 7 C 0.502 3.498 8 O -0.529 6.529 9 N -0.603 5.603 10 C 0.101 3.899 11 C -0.167 4.167 12 C 0.071 3.929 13 O -0.371 6.371 14 C 0.084 3.916 15 H 0.051 0.949 16 C 0.171 3.829 17 N -0.749 5.749 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.081 3.919 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.413 0.587 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.364 0.636 44 H 0.259 0.741 45 H 0.088 0.912 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.342 -0.288 12.574 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.421 6.421 5 N -0.377 5.377 6 C -0.027 4.027 7 C 0.289 3.711 8 O -0.405 6.405 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.205 4.205 12 C -0.006 4.006 13 O -0.289 6.289 14 C 0.024 3.976 15 H 0.069 0.931 16 C 0.043 3.957 17 N -0.395 5.395 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.584 5.584 22 Si 0.718 3.282 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.205 1.205 26 C -0.043 4.043 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.251 0.749 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.197 0.803 44 H 0.069 0.931 45 H 0.107 0.893 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.175 -0.089 12.576 28.142 hybrid contribution -0.645 -0.150 -0.973 1.177 sum -25.820 -0.239 11.602 28.308 Atomic orbital electron populations 1.21535 0.92818 1.01740 1.03362 1.21627 0.98705 0.93247 1.04783 1.20853 0.81437 0.92240 0.75344 1.90704 1.55314 1.46577 1.49526 1.45835 1.07823 1.08202 1.75828 1.21126 0.91260 0.85764 1.04558 1.20596 0.89802 0.84143 0.76603 1.90736 1.69721 1.30726 1.49324 1.47888 1.07148 1.05790 1.72827 1.22025 0.95200 0.84161 1.00753 1.22439 1.02398 0.98301 0.97373 1.22162 0.83581 0.98250 0.96587 1.86432 1.25041 1.36929 1.80463 1.22332 0.98070 0.85870 0.91292 0.93131 1.20592 0.87458 0.98902 0.88736 1.42544 1.06689 1.88740 1.01542 1.19056 0.83032 1.41269 0.93743 0.89183 1.24650 0.95679 1.01970 0.96911 1.69705 1.12295 1.56980 1.19381 0.86498 0.80852 0.77949 0.82944 1.21035 1.21862 1.20497 1.22457 0.78106 1.04524 0.99177 0.91942 0.91973 0.91921 0.88647 0.88591 0.74856 0.88443 0.88382 0.89749 0.90845 0.89582 0.89340 0.89127 0.93583 0.94648 0.93914 0.80270 0.93120 0.89340 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.20 37.16 0.34 -0.55 16 2 C -0.14 -0.90 6.42 -27.89 -0.18 -1.08 16 3 C 0.51 4.90 7.83 -10.99 -0.09 4.81 16 4 O -0.54 -6.95 15.98 5.56 0.09 -6.86 16 5 N -0.72 -6.57 5.53 -61.47 -0.34 -6.91 16 6 C 0.10 0.89 4.49 -5.19 -0.02 0.87 16 7 C 0.50 5.65 7.70 -10.99 -0.08 5.56 16 8 O -0.53 -7.69 15.09 5.55 0.08 -7.61 16 9 N -0.60 -6.29 2.20 -172.73 -0.38 -6.67 16 10 C 0.10 0.73 5.96 -3.39 -0.02 0.71 16 11 C -0.17 -1.35 5.78 -27.37 -0.16 -1.51 16 12 C 0.07 0.82 6.37 36.42 0.23 1.05 16 13 O -0.37 -5.95 9.18 -26.53 -0.24 -6.19 16 14 C 0.08 1.37 2.73 -25.81 -0.07 1.30 16 15 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 16 C 0.17 3.41 5.95 -4.04 -0.02 3.38 16 17 N -0.75 -18.72 5.29 -59.91 -0.32 -19.03 16 18 C -0.24 -7.05 10.47 -15.06 -0.16 -7.20 16 19 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 21 N -0.94 -29.99 13.97 55.49 0.78 -29.22 16 22 Si 0.89 22.98 27.74 -169.99 -4.71 18.27 16 23 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 26 C 0.08 1.02 4.86 -3.86 -0.02 1.00 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.41 3.62 7.44 -40.82 -0.30 3.32 16 33 H 0.10 0.82 7.40 -51.93 -0.38 0.43 16 34 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.08 0.47 5.88 -51.93 -0.31 0.17 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.78 8.01 -51.93 -0.42 0.37 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.53 7.39 -51.92 -0.38 0.14 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.36 9.09 5.39 -40.82 -0.22 8.87 16 44 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 45 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 46 H 0.10 1.30 7.27 -51.92 -0.38 0.93 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -36.71 369.79 -7.29 -44.00 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.47 Total: 6.30 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.34 Total: 8.36 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.26 Total: -61.83 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.66 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.71 -7.29 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200123653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.664 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds