Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46684 * 2 1 4 4 C 1.34777 * 119.99873 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99754 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00137 * 179.97438 * 4 3 2 7 7 C 1.50699 * 109.47192 * 179.97438 * 6 4 3 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 4 10 10 C 1.47509 * 118.76176 * 359.97438 * 9 7 6 11 11 C 1.53571 * 111.02649 * 138.35122 * 10 9 7 12 12 C 1.51532 * 109.58640 * 320.02928 * 11 10 9 13 13 O 1.42149 * 108.76207 * 91.39789 * 12 11 10 14 14 C 1.38019 * 119.43867 * 272.77538 * 13 12 11 15 15 H 1.09003 * 109.46679 * 303.42224 * 14 13 12 16 16 C 1.52995 * 109.46961 * 183.42797 * 14 13 12 17 17 N 1.46499 * 109.47184 * 64.99833 * 16 14 13 18 18 C 1.36941 * 120.00430 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99620 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99695 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00179 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47050 * 90.00032 * 22 20 18 24 24 H 1.48495 * 109.47190 * 210.00440 * 22 20 18 25 25 H 1.48499 * 109.46915 * 330.00222 * 22 20 18 26 26 C 1.45125 * 118.75629 * 179.73136 * 9 7 6 27 27 H 1.09000 * 109.47486 * 300.00065 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00788 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99935 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99212 * 2 1 3 32 32 H 0.96995 * 120.00050 * 359.72237 * 3 2 1 33 33 H 1.09004 * 109.47043 * 299.99732 * 6 4 3 34 34 H 1.09000 * 109.46978 * 59.99653 * 6 4 3 35 35 H 1.08998 * 109.16885 * 258.75356 * 10 9 7 36 36 H 1.08997 * 109.16560 * 18.00943 * 10 9 7 37 37 H 1.09008 * 109.45397 * 80.06095 * 11 10 9 38 38 H 1.09003 * 109.45179 * 199.98861 * 11 10 9 39 39 H 1.09006 * 109.58891 * 211.18230 * 12 11 10 40 40 H 1.09008 * 109.58776 * 331.61344 * 12 11 10 41 41 H 1.08997 * 109.47095 * 184.99478 * 16 14 13 42 42 H 1.08993 * 109.47423 * 305.00036 * 16 14 13 43 43 H 0.96997 * 120.00139 * 359.97438 * 17 16 14 44 44 H 0.96999 * 119.99775 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.46008 * 29.32202 * 26 9 7 46 46 H 1.08994 * 109.46192 * 149.28264 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6277 -0.0005 5 8 4.1314 0.7058 -0.0005 6 6 3.8456 3.0484 -0.0011 7 6 5.3526 3.0485 -0.0010 8 8 5.9590 1.9982 -0.0009 9 7 6.0263 4.2158 -0.0009 10 6 5.2612 5.4769 -0.0015 11 6 5.8907 6.5038 0.9511 12 6 6.3579 5.8066 2.2128 13 8 7.7124 5.4106 2.0415 14 6 7.9943 4.1914 1.4592 15 1 7.5034 3.3977 2.0225 16 6 9.5067 3.9609 1.4655 17 7 9.9779 3.8483 2.8480 18 6 11.3066 3.6378 3.1037 19 1 12.0072 3.5544 2.2860 20 6 11.7529 3.5306 4.4137 21 7 13.0301 3.3288 4.6594 22 14 10.5411 3.6741 5.8280 23 1 10.0082 2.3288 6.1617 24 1 11.2301 4.2420 7.0146 25 1 9.4216 4.5657 5.4320 26 6 7.4772 4.1845 0.0052 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.3879 2.1185 -0.0041 33 1 3.4819 3.5620 -0.8912 34 1 3.4825 3.5625 0.8888 35 1 5.2477 5.8869 -1.0114 36 1 4.2383 5.2751 0.3163 37 1 6.7417 6.9785 0.4624 38 1 5.1508 7.2619 1.2080 39 1 6.2812 6.4905 3.0581 40 1 5.7402 4.9270 2.3944 41 1 9.7363 3.0412 0.9274 42 1 10.0042 4.8000 0.9794 43 1 9.3486 3.9228 3.5825 44 1 13.3421 3.2542 5.5748 45 1 7.8230 3.2796 -0.4946 46 1 7.8615 5.0587 -0.5202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200329907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -87.606577 kcal Electronic energy + Delta-G solvation = -27038.683710 eV Core-core repulsion = 23157.571872 eV Total energy + Delta-G solvation = -3881.111838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89739 -39.70704 -38.25567 -35.81007 -35.41624 -34.69628 -32.93128 -31.98329 -31.10634 -30.24807 -28.70112 -26.75859 -25.23393 -23.49966 -22.41164 -21.71566 -21.09747 -20.97880 -19.14520 -17.86608 -17.62182 -17.11552 -16.59419 -16.37930 -16.12162 -16.02159 -15.66977 -15.07290 -14.49944 -14.41418 -14.25943 -13.80410 -13.64969 -13.57813 -13.33805 -12.93074 -12.74615 -12.65409 -12.55961 -12.27523 -12.26537 -12.09170 -11.82504 -11.80542 -11.48340 -11.16702 -10.90545 -10.78214 -10.33900 -10.21183 -10.01448 -9.51821 -9.49092 -9.47334 -9.37758 -8.80021 -8.59979 -7.10892 -5.66158 -3.00236 2.37209 2.50712 2.60123 3.07118 3.48025 3.52578 3.53946 3.84942 4.09594 4.37462 4.48454 4.58144 4.62090 4.65250 4.70826 4.78584 4.79605 4.85325 4.90262 5.13512 5.23608 5.28670 5.34478 5.39532 5.41640 5.48738 5.53566 5.60641 5.64206 5.74750 5.85422 5.89356 6.00895 6.06608 6.10158 6.46359 6.63577 6.73843 7.09795 7.19929 7.89042 7.97514 8.09956 8.16793 8.52956 9.32717 10.05368 10.26279 11.52414 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.003184 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.738319 B = 8791.078731 C = 9584.263530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.739 5.739 4 C 0.508 3.492 5 O -0.488 6.488 6 C -0.165 4.165 7 C 0.504 3.496 8 O -0.484 6.484 9 N -0.614 5.614 10 C 0.105 3.895 11 C -0.167 4.167 12 C 0.072 3.928 13 O -0.372 6.372 14 C 0.083 3.917 15 H 0.051 0.949 16 C 0.171 3.829 17 N -0.750 5.750 18 C -0.239 4.239 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.936 5.936 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.275 1.275 26 C 0.084 3.916 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.398 0.602 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.363 0.637 44 H 0.258 0.742 45 H 0.095 0.905 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.995 4.818 -12.686 33.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.394 5.394 4 C 0.292 3.708 5 O -0.359 6.359 6 C -0.208 4.208 7 C 0.289 3.711 8 O -0.355 6.355 9 N -0.350 5.350 10 C -0.017 4.017 11 C -0.206 4.206 12 C -0.005 4.005 13 O -0.290 6.290 14 C 0.023 3.977 15 H 0.069 0.931 16 C 0.043 3.957 17 N -0.396 5.396 18 C -0.369 4.369 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.585 5.585 22 Si 0.714 3.286 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.201 1.201 26 C -0.039 4.039 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.196 0.804 44 H 0.068 0.932 45 H 0.114 0.886 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -29.660 3.596 -12.687 32.460 hybrid contribution -1.538 0.529 0.989 1.904 sum -31.199 4.125 -11.698 33.574 Atomic orbital electron populations 1.22001 0.94434 1.03308 1.02414 1.21280 0.94082 0.82928 1.02613 1.46037 1.06858 1.08902 1.77607 1.20053 0.82335 0.90881 0.77549 1.90904 1.54326 1.45377 1.45254 1.21661 0.95775 0.97101 1.06226 1.20033 0.88997 0.84053 0.78004 1.90903 1.69078 1.29978 1.45564 1.47943 1.06808 1.05629 1.74596 1.21988 0.95092 0.84471 1.00179 1.22510 1.02266 0.98316 0.97459 1.22123 0.83771 0.98152 0.96413 1.86425 1.24939 1.37101 1.80537 1.22262 0.97986 0.85768 0.91648 0.93074 1.20589 0.87706 0.98852 0.88560 1.42573 1.06778 1.88845 1.01373 1.19068 0.83271 1.40922 0.93626 0.89167 1.24640 0.95706 1.02048 0.96864 1.69705 1.12767 1.56779 1.19234 0.86537 0.81171 0.77891 0.83048 1.21193 1.21821 1.20053 1.22263 0.78547 1.04268 0.98856 0.91975 0.92018 0.90754 0.91503 0.91433 0.76875 0.86233 0.86265 0.91318 0.90205 0.89763 0.89678 0.89376 0.93593 0.93792 0.94639 0.80384 0.93176 0.88631 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 10.03 37.16 0.37 -0.25 16 2 C 0.11 0.81 6.39 -4.04 -0.03 0.79 16 3 N -0.74 -5.15 5.56 -60.29 -0.33 -5.48 16 4 C 0.51 5.61 7.82 -10.99 -0.09 5.53 16 5 O -0.49 -8.38 14.18 -18.96 -0.27 -8.65 16 6 C -0.16 -1.30 4.52 -29.04 -0.13 -1.43 16 7 C 0.50 6.63 7.62 -10.99 -0.08 6.54 16 8 O -0.48 -9.14 13.61 -18.96 -0.26 -9.40 16 9 N -0.61 -7.00 2.20 -172.78 -0.38 -7.38 16 10 C 0.11 0.73 6.00 -3.19 -0.02 0.72 16 11 C -0.17 -1.34 5.78 -27.18 -0.16 -1.50 16 12 C 0.07 0.85 6.37 36.41 0.23 1.09 16 13 O -0.37 -6.26 9.38 -26.55 -0.25 -6.51 16 14 C 0.08 1.46 2.67 -26.04 -0.07 1.39 16 15 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 16 C 0.17 3.61 5.92 -4.04 -0.02 3.58 16 17 N -0.75 -19.50 5.34 -59.91 -0.32 -19.82 16 18 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 19 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 20 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 21 N -0.94 -30.67 13.97 55.49 0.78 -29.90 16 22 Si 0.88 23.48 27.74 -169.99 -4.71 18.76 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.27 -6.97 6.52 56.52 0.37 -6.60 16 26 C 0.08 1.18 4.83 -4.08 -0.02 1.16 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.40 1.30 8.47 -40.82 -0.35 0.95 16 33 H 0.12 0.51 8.04 -51.93 -0.42 0.09 16 34 H 0.12 0.58 7.41 -51.93 -0.38 0.20 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.33 5.88 -51.93 -0.31 0.02 16 37 H 0.08 0.79 8.01 -51.92 -0.42 0.37 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.54 7.40 -51.92 -0.38 0.16 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.36 9.40 5.52 -40.82 -0.23 9.18 16 44 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 45 H 0.10 1.48 7.27 -51.93 -0.38 1.10 16 46 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -41.24 368.68 -7.98 -49.22 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.52 Total: 3.34 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.27 Total: 10.25 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.26 Total: -62.58 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.78 Total: -24.56 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.71 Total: 18.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -41.24 -7.98 -49.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200329907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.383 kcal (2) G-P(sol) polarization free energy of solvation -41.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds