Wall clock time and date at job start Fri Apr 10 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46684 * 2 1 4 4 C 1.34777 * 119.99873 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99754 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00137 * 179.97438 * 4 3 2 7 7 C 1.50699 * 109.47192 * 179.97438 * 6 4 3 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 4 10 10 C 1.47509 * 118.76176 * 359.97438 * 9 7 6 11 11 C 1.53571 * 111.02649 * 138.35122 * 10 9 7 12 12 C 1.51532 * 109.58640 * 320.02928 * 11 10 9 13 13 O 1.42149 * 108.76207 * 91.39789 * 12 11 10 14 14 C 1.38019 * 119.43867 * 272.77538 * 13 12 11 15 15 H 1.09003 * 109.46679 * 303.42224 * 14 13 12 16 16 C 1.52995 * 109.46961 * 183.42797 * 14 13 12 17 17 N 1.46499 * 109.47184 * 64.99833 * 16 14 13 18 18 C 1.36941 * 120.00430 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99620 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99695 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00179 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47050 * 90.00032 * 22 20 18 24 24 H 1.48495 * 109.47190 * 210.00440 * 22 20 18 25 25 H 1.48499 * 109.46915 * 330.00222 * 22 20 18 26 26 C 1.45125 * 118.75629 * 179.73136 * 9 7 6 27 27 H 1.09000 * 109.47486 * 300.00065 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00788 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99935 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99212 * 2 1 3 32 32 H 0.96995 * 120.00050 * 359.72237 * 3 2 1 33 33 H 1.09004 * 109.47043 * 299.99732 * 6 4 3 34 34 H 1.09000 * 109.46978 * 59.99653 * 6 4 3 35 35 H 1.08998 * 109.16885 * 258.75356 * 10 9 7 36 36 H 1.08997 * 109.16560 * 18.00943 * 10 9 7 37 37 H 1.09008 * 109.45397 * 80.06095 * 11 10 9 38 38 H 1.09003 * 109.45179 * 199.98861 * 11 10 9 39 39 H 1.09006 * 109.58891 * 211.18230 * 12 11 10 40 40 H 1.09008 * 109.58776 * 331.61344 * 12 11 10 41 41 H 1.08997 * 109.47095 * 184.99478 * 16 14 13 42 42 H 1.08993 * 109.47423 * 305.00036 * 16 14 13 43 43 H 0.96997 * 120.00139 * 359.97438 * 17 16 14 44 44 H 0.96999 * 119.99775 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.46008 * 29.32202 * 26 9 7 46 46 H 1.08994 * 109.46192 * 149.28264 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6277 -0.0005 5 8 4.1314 0.7058 -0.0005 6 6 3.8456 3.0484 -0.0011 7 6 5.3526 3.0485 -0.0010 8 8 5.9590 1.9982 -0.0009 9 7 6.0263 4.2158 -0.0009 10 6 5.2612 5.4769 -0.0015 11 6 5.8907 6.5038 0.9511 12 6 6.3579 5.8066 2.2128 13 8 7.7124 5.4106 2.0415 14 6 7.9943 4.1914 1.4592 15 1 7.5034 3.3977 2.0225 16 6 9.5067 3.9609 1.4655 17 7 9.9779 3.8483 2.8480 18 6 11.3066 3.6378 3.1037 19 1 12.0072 3.5544 2.2860 20 6 11.7529 3.5306 4.4137 21 7 13.0301 3.3288 4.6594 22 14 10.5411 3.6741 5.8280 23 1 10.0082 2.3288 6.1617 24 1 11.2301 4.2420 7.0146 25 1 9.4216 4.5657 5.4320 26 6 7.4772 4.1845 0.0052 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.3879 2.1185 -0.0041 33 1 3.4819 3.5620 -0.8912 34 1 3.4825 3.5625 0.8888 35 1 5.2477 5.8869 -1.0114 36 1 4.2383 5.2751 0.3163 37 1 6.7417 6.9785 0.4624 38 1 5.1508 7.2619 1.2080 39 1 6.2812 6.4905 3.0581 40 1 5.7402 4.9270 2.3944 41 1 9.7363 3.0412 0.9274 42 1 10.0042 4.8000 0.9794 43 1 9.3486 3.9228 3.5825 44 1 13.3421 3.2542 5.5748 45 1 7.8230 3.2796 -0.4946 46 1 7.8615 5.0587 -0.5202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200329907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:05 Heat of formation + Delta-G solvation = -120.422275 kcal Electronic energy + Delta-G solvation = -27040.106705 eV Core-core repulsion = 23157.571872 eV Total energy + Delta-G solvation = -3882.534833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84513 -40.64872 -39.33237 -37.02959 -36.39194 -36.08957 -34.38014 -33.03490 -32.69616 -31.00711 -29.93960 -27.73779 -26.63352 -24.50804 -23.71659 -22.89681 -22.33096 -21.84486 -20.00452 -19.83048 -18.67462 -18.07994 -17.64047 -17.27858 -17.12943 -16.87206 -16.60758 -16.35925 -15.96745 -15.63423 -15.13823 -15.08242 -14.85671 -14.64786 -14.49284 -14.34542 -13.98808 -13.75179 -13.52567 -13.32064 -13.22971 -12.98383 -12.88110 -12.68405 -12.58078 -12.34369 -12.34129 -12.13282 -12.00928 -11.84692 -11.48676 -11.09029 -11.05882 -10.57420 -10.50395 -10.08177 -9.61729 -9.35010 -8.06164 -5.39507 1.33277 1.37061 1.45249 1.57291 1.69380 1.75471 2.37695 2.45402 2.68943 3.25258 3.33932 3.47367 3.81165 3.87097 3.99190 4.04040 4.07107 4.16402 4.18513 4.22623 4.29392 4.35239 4.39407 4.49012 4.51952 4.52111 4.71227 4.77661 4.85170 4.91633 4.96765 5.05694 5.06095 5.15771 5.24183 5.26925 5.49152 5.56430 5.69850 6.17301 6.29432 6.60628 6.71549 7.02671 7.18951 7.38573 7.78262 7.98832 9.15317 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.003184 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.738319 B = 8791.078731 C = 9584.263530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.716 5.716 4 C 0.499 3.501 5 O -0.562 6.562 6 C -0.150 4.150 7 C 0.493 3.507 8 O -0.555 6.555 9 N -0.609 5.609 10 C 0.097 3.903 11 C -0.158 4.158 12 C 0.059 3.941 13 O -0.399 6.399 14 C 0.103 3.897 15 H 0.023 0.977 16 C 0.164 3.836 17 N -0.754 5.754 18 C -0.237 4.237 19 H 0.059 0.941 20 C -0.063 4.063 21 N -0.981 5.981 22 Si 0.956 3.044 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.255 1.255 26 C 0.095 3.905 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.420 0.580 33 H 0.170 0.830 34 H 0.162 0.838 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.046 0.954 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.365 0.635 44 H 0.259 0.741 45 H 0.071 0.929 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.904 7.725 -12.936 38.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.372 5.372 4 C 0.284 3.716 5 O -0.439 6.439 6 C -0.192 4.192 7 C 0.281 3.719 8 O -0.432 6.432 9 N -0.344 5.344 10 C -0.023 4.023 11 C -0.196 4.196 12 C -0.016 4.016 13 O -0.318 6.318 14 C 0.043 3.957 15 H 0.041 0.959 16 C 0.038 3.962 17 N -0.399 5.399 18 C -0.368 4.368 19 H 0.077 0.923 20 C -0.255 4.255 21 N -0.632 5.632 22 Si 0.783 3.217 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.180 1.180 26 C -0.030 4.030 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.258 0.742 33 H 0.187 0.813 34 H 0.180 0.820 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.198 0.802 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -34.690 6.597 -12.975 37.620 hybrid contribution -0.023 -0.338 1.002 1.057 sum -34.712 6.259 -11.973 37.249 Atomic orbital electron populations 1.21933 0.91315 1.04074 1.03650 1.21314 0.96490 0.82851 1.00800 1.45881 1.06116 1.09672 1.75535 1.20737 0.82869 0.91653 0.76296 1.90892 1.56380 1.47736 1.48909 1.21737 0.91406 0.95637 1.10419 1.21016 0.91256 0.83275 0.76383 1.90890 1.70877 1.32646 1.48751 1.48068 1.05588 1.07242 1.73455 1.22442 0.96119 0.82025 1.01707 1.22449 1.02891 0.98919 0.95364 1.22503 0.81330 0.98648 0.99152 1.86346 1.28509 1.36077 1.80904 1.21781 0.94711 0.85546 0.93673 0.95890 1.20731 0.91013 0.98469 0.86018 1.42584 1.05200 1.88719 1.03424 1.19071 0.84666 1.40007 0.93010 0.92292 1.25493 0.97739 1.02377 0.99847 1.69877 1.15004 1.58391 1.19929 0.85387 0.79062 0.78214 0.79063 1.20822 1.21323 1.17990 1.21914 0.81002 1.03936 0.96137 0.90815 0.90541 0.90340 0.93245 0.93628 0.74170 0.81262 0.82045 0.88648 0.86025 0.91054 0.85708 0.88391 0.93546 0.94629 0.94305 0.80209 0.93185 0.91056 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.03 71.98 0.72 -0.06 16 2 C 0.11 1.48 6.39 86.38 0.55 2.03 16 3 N -0.72 -8.28 5.56 -463.05 -2.57 -10.85 16 4 C 0.50 10.32 7.82 87.66 0.69 11.01 16 5 O -0.56 -20.22 14.18 20.40 0.29 -19.94 16 6 C -0.15 -1.75 4.52 29.10 0.13 -1.62 16 7 C 0.49 12.24 7.62 87.66 0.67 12.91 16 8 O -0.56 -21.92 13.61 20.40 0.28 -21.64 16 9 N -0.61 -12.38 2.20 -818.93 -1.80 -14.18 16 10 C 0.10 0.82 6.00 86.38 0.52 1.33 16 11 C -0.16 -1.78 5.78 30.31 0.18 -1.60 16 12 C 0.06 1.22 6.37 71.50 0.46 1.68 16 13 O -0.40 -12.99 9.38 -117.91 -1.11 -14.09 16 14 C 0.10 3.65 2.67 31.04 0.08 3.73 16 15 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 16 C 0.16 7.21 5.92 86.38 0.51 7.73 16 17 N -0.75 -40.07 5.34 -343.47 -1.83 -41.91 16 18 C -0.24 -14.75 10.47 84.03 0.88 -13.87 16 19 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 20 C -0.06 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.98 -66.13 13.97 21.65 0.30 -65.83 16 22 Si 0.96 49.17 27.74 68.60 1.90 51.07 16 23 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.26 -12.17 6.52 99.48 0.65 -11.52 16 26 C 0.10 2.64 4.83 87.09 0.42 3.06 16 27 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.42 0.90 8.47 -92.71 -0.79 0.11 16 33 H 0.17 0.31 8.04 -2.38 -0.02 0.30 16 34 H 0.16 0.55 7.41 -2.39 -0.02 0.53 16 35 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.12 0.05 5.88 -2.39 -0.01 0.04 16 37 H 0.07 1.05 8.01 -2.38 -0.02 1.03 16 38 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.05 0.95 7.40 -2.38 -0.02 0.93 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.37 18.93 5.52 -92.71 -0.51 18.42 16 44 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 45 H 0.07 2.33 7.27 -2.39 -0.02 2.32 16 46 H 0.10 2.45 8.11 -2.39 -0.02 2.43 16 Total: -1.00 -99.76 368.68 1.36 -98.40 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.37 Total: 16.14 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 6.27 Total: 22.81 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -5.91 Total: -132.77 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -0.54 Total: -55.66 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 1.90 Total: 51.07 kcal Total: -99.76 1.36 -98.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200329907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.021 kcal (2) G-P(sol) polarization free energy of solvation -99.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds