Wall clock time and date at job start Fri Apr 10 2020 18:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00194 * 2 1 4 4 C 1.50695 * 109.47163 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00292 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00162 * 180.02562 * 4 3 2 7 7 C 1.46498 * 120.00257 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47196 * 324.99769 * 7 6 4 9 9 C 1.53003 * 109.46841 * 84.99979 * 7 6 4 10 10 C 1.50696 * 109.47219 * 204.99833 * 7 6 4 11 11 O 1.21287 * 120.00280 * 337.26853 * 10 7 6 12 12 N 1.34778 * 119.99985 * 157.26551 * 10 7 6 13 13 C 1.46924 * 120.63239 * 4.79911 * 12 10 7 14 14 C 1.52761 * 109.00790 * 233.58674 * 13 12 10 15 15 C 1.53039 * 109.38143 * 305.58236 * 14 13 12 16 16 N 1.46504 * 109.44838 * 181.25242 * 15 14 13 17 17 C 1.36943 * 119.99469 * 84.94160 * 16 15 14 18 18 H 1.07998 * 120.00238 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99763 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00025 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00192 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47582 * 89.99466 * 21 19 17 23 23 H 1.48504 * 109.47056 * 210.00194 * 21 19 17 24 24 H 1.48503 * 109.46849 * 329.99701 * 21 19 17 25 25 C 1.53042 * 109.53597 * 61.24379 * 15 14 13 26 26 C 1.46933 * 120.62831 * 185.07760 * 12 10 7 27 27 H 1.08995 * 109.47519 * 300.00803 * 1 2 3 28 28 H 1.09004 * 109.46715 * 60.00471 * 1 2 3 29 29 H 1.08995 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46923 * 59.99346 * 3 2 1 31 31 H 1.09002 * 109.46960 * 299.99514 * 3 2 1 32 32 H 0.97006 * 119.99614 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47093 * 56.07628 * 9 7 6 34 34 H 1.09004 * 109.46864 * 176.07412 * 9 7 6 35 35 H 1.08994 * 109.47444 * 296.07063 * 9 7 6 36 36 H 1.09000 * 109.58348 * 353.41569 * 13 12 10 37 37 H 1.08993 * 109.58783 * 113.84537 * 13 12 10 38 38 H 1.09005 * 109.56457 * 185.55318 * 14 13 12 39 39 H 1.08998 * 109.36111 * 65.49331 * 14 13 12 40 40 H 1.08992 * 109.46422 * 301.22355 * 15 14 13 41 41 H 0.96996 * 120.00165 * 264.93945 * 16 15 14 42 42 H 0.96996 * 119.99843 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.49972 * 178.68092 * 25 15 14 44 44 H 1.08997 * 109.50069 * 58.58748 * 25 15 14 45 45 H 1.08996 * 109.58345 * 246.15280 * 26 12 10 46 46 H 1.08994 * 109.58785 * 6.44063 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0013 7 6 5.7369 2.1811 0.0025 8 1 6.0322 1.3132 0.5922 9 6 6.2365 2.0155 -1.4342 10 6 6.3389 3.4250 0.6034 11 8 5.7075 4.4606 0.6131 12 7 7.5789 3.3869 1.1300 13 6 8.3966 2.1701 1.0326 14 6 8.8680 1.7741 2.4307 15 6 9.5821 2.9612 3.0810 16 7 10.0611 2.5737 4.4102 17 6 11.2677 1.9405 4.5454 18 1 11.8664 1.7271 3.6723 19 6 11.7218 1.5738 5.8048 20 7 10.9928 1.8353 6.8691 21 14 13.3681 0.7106 5.9894 22 1 14.4400 1.7223 6.1702 23 1 13.3275 -0.1847 7.1735 24 1 13.6454 -0.0921 4.7712 25 6 8.6087 4.1349 3.2120 26 6 8.1365 4.5595 1.8179 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8464 -0.8900 32 1 3.8593 3.1725 0.0017 33 1 5.8821 2.8491 -2.0405 34 1 7.3264 1.9994 -1.4403 35 1 5.8571 1.0800 -1.8453 36 1 7.8007 1.3626 0.6071 37 1 9.2623 2.3614 0.3987 38 1 9.5551 0.9310 2.3590 39 1 8.0066 1.4917 3.0359 40 1 10.4287 3.2589 2.4625 41 1 9.5235 2.7658 5.1944 42 1 11.3099 1.5787 7.7492 43 1 9.1113 4.9721 3.6965 44 1 7.7498 3.8302 3.8099 45 1 8.9806 4.9495 1.2492 46 1 7.3698 5.3290 1.9081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200722949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:11 Heat of formation + Delta-G solvation = -100.447009 kcal Electronic energy + Delta-G solvation = -26610.859694 eV Core-core repulsion = 22729.191054 eV Total energy + Delta-G solvation = -3881.668641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77778 -39.65905 -37.88567 -37.43168 -35.17894 -34.59541 -32.36017 -31.53329 -30.62709 -29.29507 -28.75785 -26.27856 -25.49446 -24.08042 -23.08049 -22.39253 -20.91810 -20.26162 -19.21443 -18.05218 -17.19366 -17.11110 -16.76335 -16.62438 -15.97228 -15.60363 -15.30990 -14.85459 -14.68412 -14.63005 -13.98337 -13.79162 -13.61860 -13.50127 -13.37625 -13.34042 -12.92748 -12.54601 -12.46303 -12.30554 -12.01330 -11.84545 -11.82443 -11.62824 -11.00600 -10.91319 -10.85566 -10.54578 -10.25744 -10.19376 -10.08344 -9.91824 -9.84574 -9.70287 -9.40276 -8.94235 -8.63721 -7.01406 -5.80372 -3.09980 2.21167 2.36331 2.54236 3.01534 3.41101 3.46301 3.48139 3.72230 4.21139 4.42255 4.54942 4.69006 4.74394 4.83684 4.85711 4.93677 4.98844 5.02883 5.21862 5.27070 5.29331 5.32216 5.34752 5.49020 5.51938 5.57674 5.65647 5.85788 5.87673 5.91250 6.05164 6.16718 6.29417 6.33457 6.44656 6.52988 6.57877 6.82781 6.98999 7.20591 7.33000 7.65634 7.92842 7.99269 8.37741 9.49047 10.05909 10.40378 11.42123 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.002698 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.229772 B =10375.146988 C =11104.846917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.516 3.484 5 O -0.516 6.516 6 N -0.714 5.714 7 C 0.125 3.875 8 H 0.115 0.885 9 C -0.159 4.159 10 C 0.515 3.485 11 O -0.548 6.548 12 N -0.597 5.597 13 C 0.101 3.899 14 C -0.153 4.153 15 C 0.179 3.821 16 N -0.724 5.724 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.139 4.139 26 C 0.117 3.883 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.410 0.590 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.384 2.914 -17.398 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.035 4.035 4 C 0.301 3.699 5 O -0.390 6.390 6 N -0.370 5.370 7 C 0.017 3.983 8 H 0.132 0.868 9 C -0.217 4.217 10 C 0.301 3.699 11 O -0.427 6.427 12 N -0.330 5.330 13 C -0.022 4.022 14 C -0.194 4.194 15 C 0.069 3.931 16 N -0.364 5.364 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.178 4.178 26 C -0.006 4.006 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.247 0.753 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.032 2.399 -17.372 24.446 hybrid contribution 0.377 0.145 0.558 0.689 sum -16.655 2.544 -16.814 23.803 Atomic orbital electron populations 1.22851 0.80223 1.03423 1.00180 1.88022 1.19892 1.25042 1.95444 1.22194 0.91243 0.87147 1.02929 1.20249 0.88777 0.84352 0.76487 1.90755 1.74475 1.26346 1.47447 1.45656 1.05526 1.09697 1.76115 1.20822 0.80873 0.97769 0.98823 0.86753 1.22126 1.02105 1.03483 0.94015 1.20435 0.81572 0.89708 0.78141 1.90656 1.61098 1.32289 1.58639 1.48126 1.14713 1.15262 1.54857 1.21952 0.94885 0.85722 0.99684 1.22628 1.01289 1.01843 0.93675 1.20162 0.93493 0.90626 0.88853 1.42432 1.21727 1.70256 1.01994 1.19224 0.95341 1.30040 0.92593 0.91129 1.24760 0.98754 1.01845 0.95551 1.69664 1.38161 1.52472 0.97712 0.86200 0.83749 0.79114 0.77168 1.21722 1.21780 1.20731 1.22218 1.00117 1.00136 0.95358 1.21668 0.98644 0.87349 0.92928 0.93680 0.93789 0.88994 0.89926 0.90022 0.75331 0.91577 0.90650 0.90638 0.90126 0.90889 0.90315 0.92115 0.93312 0.78253 0.93465 0.90374 0.91828 0.91299 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.94 10.24 -55.14 -0.56 -4.51 16 3 C 0.04 0.38 6.42 36.00 0.23 0.61 16 4 C 0.52 6.03 7.87 -10.99 -0.09 5.95 16 5 O -0.52 -8.24 16.16 -14.36 -0.23 -8.47 16 6 N -0.71 -7.44 5.05 -54.94 -0.28 -7.72 16 7 C 0.13 1.42 2.12 -69.08 -0.15 1.27 16 8 H 0.11 1.43 6.05 -51.93 -0.31 1.12 16 9 C -0.16 -1.49 9.21 37.16 0.34 -1.15 16 10 C 0.51 6.74 6.92 -10.99 -0.08 6.66 16 11 O -0.55 -8.28 15.40 5.55 0.09 -8.19 16 12 N -0.60 -7.77 2.98 -173.03 -0.52 -8.29 16 13 C 0.10 1.24 5.65 -3.93 -0.02 1.22 16 14 C -0.15 -2.49 5.64 -26.83 -0.15 -2.65 16 15 C 0.18 3.30 2.73 -67.89 -0.19 3.12 16 16 N -0.72 -17.48 5.12 -53.39 -0.27 -17.75 16 17 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 26 C 0.12 1.56 6.42 -3.71 -0.02 1.53 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.41 3.67 7.76 -40.82 -0.32 3.36 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.63 7.15 -51.93 -0.37 0.26 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.87 5.06 -51.93 -0.26 0.61 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.09 1.21 7.03 -51.93 -0.37 0.84 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -34.39 374.76 -7.24 -41.62 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.41 Total: 9.33 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 0.60 Total: 8.44 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.34 Total: -60.89 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.71 Total: -21.17 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.39 -7.24 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200722949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.823 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds