Wall clock time and date at job start Fri Apr 10 2020 18:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99598 * 2 1 4 4 C 1.50698 * 109.46923 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00257 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00147 * 179.72927 * 4 3 2 7 7 C 1.46495 * 120.00201 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47458 * 35.00456 * 7 6 4 9 9 C 1.53000 * 109.47281 * 274.99656 * 7 6 4 10 10 C 1.50710 * 109.47043 * 154.99713 * 7 6 4 11 11 O 1.21276 * 119.99819 * 17.31945 * 10 7 6 12 12 N 1.34775 * 120.00146 * 197.31678 * 10 7 6 13 13 C 1.46923 * 120.63258 * 185.00087 * 12 10 7 14 14 C 1.52761 * 109.00922 * 233.58301 * 13 12 10 15 15 C 1.53034 * 109.38303 * 305.58791 * 14 13 12 16 16 N 1.46509 * 109.46047 * 181.25837 * 15 14 13 17 17 C 1.36936 * 119.99613 * 84.92945 * 16 15 14 18 18 H 1.07998 * 120.00427 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99478 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00308 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99632 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47467 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47006 * 120.00430 * 21 19 17 24 24 H 1.48499 * 109.47409 * 240.00070 * 21 19 17 25 25 C 1.53045 * 109.53978 * 61.23797 * 15 14 13 26 26 C 1.46929 * 120.63049 * 5.27864 * 12 10 7 27 27 H 1.08992 * 109.47336 * 299.99694 * 1 2 3 28 28 H 1.09003 * 109.47228 * 59.99774 * 1 2 3 29 29 H 1.09007 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47244 * 60.00217 * 3 2 1 31 31 H 1.08998 * 109.47410 * 300.00044 * 3 2 1 32 32 H 0.97010 * 119.99640 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.46587 * 179.25469 * 9 7 6 34 34 H 1.09001 * 109.46975 * 299.25665 * 9 7 6 35 35 H 1.08997 * 109.46814 * 59.26288 * 9 7 6 36 36 H 1.09001 * 109.58574 * 353.41575 * 13 12 10 37 37 H 1.08998 * 109.59084 * 113.84305 * 13 12 10 38 38 H 1.08997 * 109.56636 * 185.55334 * 14 13 12 39 39 H 1.09001 * 109.35939 * 65.49966 * 14 13 12 40 40 H 1.08993 * 109.46159 * 301.21954 * 15 14 13 41 41 H 0.96997 * 119.99763 * 264.93268 * 16 15 14 42 42 H 0.97000 * 120.00086 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.49616 * 178.67908 * 25 15 14 44 44 H 1.09006 * 109.52212 * 58.60488 * 25 15 14 45 45 H 1.08997 * 109.58541 * 246.15971 * 26 12 10 46 46 H 1.09008 * 109.58490 * 6.43936 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0006 6 7 4.2764 2.2969 -0.0063 7 6 5.7367 2.1813 -0.0063 8 1 6.0323 1.3107 -0.5918 9 6 6.2359 2.0227 1.4313 10 6 6.3389 3.4225 -0.6131 11 8 5.6731 4.4309 -0.7171 12 7 7.6172 3.4120 -1.0400 13 6 8.2522 4.6420 -1.5325 14 6 8.8312 4.3811 -2.9218 15 6 9.7659 3.1708 -2.8635 16 7 10.3455 2.9374 -4.1886 17 6 11.4669 3.6213 -4.5755 18 1 11.9244 4.3325 -3.9037 19 6 12.0164 3.3998 -5.8308 20 7 11.4592 2.5327 -6.6494 21 14 13.5466 4.3322 -6.3583 22 1 13.9747 5.2403 -5.2642 23 1 14.6361 3.3678 -6.6554 24 1 13.2460 5.1293 -7.5746 25 6 8.9759 1.9346 -2.4276 26 6 8.4004 2.1689 -1.0274 27 1 -0.3633 0.5137 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.8591 3.1727 -0.0103 33 1 7.3213 1.9234 1.4300 34 1 5.9518 2.8994 2.0133 35 1 5.7901 1.1322 1.8744 36 1 7.5100 5.4381 -1.5910 37 1 9.0538 4.9360 -0.8549 38 1 9.3894 5.2561 -3.2548 39 1 8.0186 4.1800 -3.6200 40 1 10.5643 3.3627 -2.1468 41 1 9.9348 2.2984 -4.7919 42 1 11.8429 2.3782 -7.5268 43 1 9.6372 1.0682 -2.4089 44 1 8.1620 1.7559 -3.1303 45 1 9.2143 2.2570 -0.3078 46 1 7.7565 1.3341 -0.7503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200722950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:13 Heat of formation + Delta-G solvation = -100.254148 kcal Electronic energy + Delta-G solvation = -26532.547048 eV Core-core repulsion = 22650.886770 eV Total energy + Delta-G solvation = -3881.660278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78639 -39.67149 -37.89927 -37.43244 -35.19259 -34.60701 -32.33019 -31.56520 -30.64244 -29.30982 -28.75265 -26.29062 -25.42193 -24.26567 -22.87464 -22.52105 -20.94481 -20.24880 -19.19663 -18.08663 -17.27796 -17.01294 -16.77844 -16.64477 -15.97305 -15.63939 -15.31203 -14.85908 -14.74391 -14.63013 -13.96936 -13.74681 -13.67251 -13.60213 -13.43312 -13.16614 -12.84540 -12.57423 -12.51955 -12.44708 -12.02235 -11.87412 -11.85049 -11.56365 -10.97233 -10.93755 -10.84723 -10.47356 -10.27378 -10.21069 -10.10360 -10.03475 -9.78508 -9.68403 -9.41652 -8.94436 -8.63416 -7.01093 -5.80546 -3.09999 2.22908 2.35446 2.49866 3.01187 3.40558 3.46155 3.48506 3.70457 4.19534 4.40213 4.54508 4.67504 4.72204 4.77607 4.83170 4.92211 4.97234 4.98404 5.17496 5.26022 5.27703 5.34097 5.38589 5.48193 5.52246 5.56930 5.71583 5.82812 5.84781 5.90696 6.04409 6.15234 6.22641 6.39140 6.49257 6.51334 6.56175 6.85523 7.00093 7.18983 7.33165 7.66243 7.91002 7.99790 8.37541 9.48950 10.05854 10.40349 11.42000 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023996 B = 0.002471 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.576058 B =11328.830825 C =11798.170446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.517 3.483 5 O -0.517 6.517 6 N -0.713 5.713 7 C 0.125 3.875 8 H 0.115 0.885 9 C -0.158 4.158 10 C 0.514 3.486 11 O -0.547 6.547 12 N -0.597 5.597 13 C 0.113 3.887 14 C -0.151 4.151 15 C 0.179 3.821 16 N -0.724 5.724 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.141 4.141 26 C 0.104 3.896 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.410 0.590 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.308 -0.900 17.721 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.035 4.035 4 C 0.302 3.698 5 O -0.392 6.392 6 N -0.370 5.370 7 C 0.017 3.983 8 H 0.132 0.868 9 C -0.216 4.216 10 C 0.300 3.700 11 O -0.425 6.425 12 N -0.330 5.330 13 C -0.010 4.010 14 C -0.192 4.192 15 C 0.069 3.931 16 N -0.364 5.364 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.180 4.180 26 C -0.019 4.019 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.983 -1.244 17.627 25.212 hybrid contribution 0.344 0.999 -0.737 1.288 sum -17.639 -0.245 16.890 24.423 Atomic orbital electron populations 1.22853 0.80214 1.03420 1.00199 1.88018 1.19901 1.25050 1.95450 1.22197 0.91252 0.87139 1.02957 1.20242 0.88779 0.84336 0.76455 1.90746 1.74489 1.26360 1.47581 1.45657 1.05549 1.09743 1.76014 1.20822 0.80916 0.97851 0.98742 0.86781 1.22105 1.02211 1.03344 0.93950 1.20428 0.81918 0.89493 0.78128 1.90657 1.60177 1.34490 1.57166 1.48110 1.11604 1.11218 1.62028 1.21668 0.97098 0.85919 0.96280 1.22598 1.00198 1.02086 0.94292 1.20166 0.92736 0.90939 0.89294 1.42435 1.31332 1.49798 1.12882 1.19269 1.02264 1.17187 0.98373 0.91086 1.24760 0.99548 0.99731 0.96930 1.69670 1.41827 1.37646 1.08837 0.86131 0.82857 0.79006 0.78263 1.20543 1.21867 1.21886 1.22222 1.00463 1.00376 0.94943 1.21951 0.95587 0.85428 0.98891 0.93770 0.93684 0.88993 0.90017 0.89909 0.75267 0.90573 0.91664 0.90677 0.89600 0.91535 0.90553 0.92272 0.93313 0.78254 0.93517 0.90167 0.91666 0.90696 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.83 10.24 -55.14 -0.56 -4.39 16 3 C 0.04 0.36 6.42 36.00 0.23 0.59 16 4 C 0.52 5.85 7.87 -10.99 -0.09 5.76 16 5 O -0.52 -7.97 16.16 -14.35 -0.23 -8.20 16 6 N -0.71 -7.25 5.03 -54.93 -0.28 -7.52 16 7 C 0.12 1.36 2.14 -69.08 -0.15 1.22 16 8 H 0.11 1.33 5.90 -51.93 -0.31 1.03 16 9 C -0.16 -1.41 9.31 37.16 0.35 -1.06 16 10 C 0.51 6.70 6.96 -10.98 -0.08 6.62 16 11 O -0.55 -8.41 15.31 5.56 0.09 -8.33 16 12 N -0.60 -7.73 2.98 -173.03 -0.52 -8.24 16 13 C 0.11 1.58 6.41 -3.93 -0.03 1.56 16 14 C -0.15 -2.58 5.64 -26.84 -0.15 -2.73 16 15 C 0.18 3.30 2.73 -67.89 -0.19 3.12 16 16 N -0.72 -17.50 5.12 -53.38 -0.27 -17.78 16 17 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C -0.14 -2.12 5.55 -26.61 -0.15 -2.27 16 26 C 0.10 1.21 5.56 -3.71 -0.02 1.19 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.41 3.64 7.72 -40.82 -0.32 3.32 16 33 H 0.08 0.60 7.23 -51.93 -0.38 0.22 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 41 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.82 5.30 -51.92 -0.28 0.54 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -34.57 374.79 -7.24 -41.81 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.41 Total: 8.89 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 0.60 Total: 8.19 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.34 Total: -60.67 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.71 Total: -20.93 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.57 -7.24 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200722950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.444 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds