Wall clock time and date at job start Fri Apr 10 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47543 * 2 1 4 4 C 1.53002 * 109.47076 * 120.00407 * 2 1 3 5 5 C 1.50695 * 109.47280 * 294.99690 * 4 2 1 6 6 N 1.34777 * 120.00160 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99669 * 359.97438 * 5 4 2 8 8 C 1.50710 * 109.46799 * 239.99918 * 2 1 3 9 9 O 1.21280 * 119.99997 * 267.49904 * 8 2 1 10 10 N 1.34776 * 119.99521 * 87.49709 * 8 2 1 11 11 C 1.47510 * 118.75883 * 354.42040 * 10 8 2 12 12 C 1.53572 * 111.02944 * 221.65297 * 11 10 8 13 13 C 1.51535 * 109.58139 * 39.97440 * 12 11 10 14 14 O 1.42150 * 108.75703 * 268.60415 * 13 12 11 15 15 C 1.38019 * 119.44680 * 87.22650 * 14 13 12 16 16 H 1.09004 * 109.46105 * 56.57220 * 15 14 13 17 17 C 1.52995 * 109.47199 * 176.57225 * 15 14 13 18 18 N 1.46505 * 109.46858 * 300.01000 * 17 15 14 19 19 C 1.36929 * 119.99708 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00331 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99927 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00184 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00113 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47219 * 90.00096 * 23 21 19 25 25 H 1.48497 * 109.47248 * 210.00224 * 23 21 19 26 26 H 1.48496 * 109.46784 * 329.99933 * 23 21 19 27 27 C 1.45120 * 118.75362 * 174.43857 * 10 8 2 28 28 H 1.09005 * 109.46911 * 296.80260 * 1 2 3 29 29 H 1.09004 * 109.46987 * 56.79765 * 1 2 3 30 30 H 1.08990 * 109.47504 * 176.80473 * 1 2 3 31 31 H 1.09007 * 109.47222 * 54.99537 * 4 2 1 32 32 H 1.08996 * 109.47027 * 174.99318 * 4 2 1 33 33 H 0.96999 * 119.99906 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99911 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.17128 * 342.05206 * 11 10 8 36 36 H 1.09003 * 109.16565 * 101.25186 * 11 10 8 37 37 H 1.09001 * 109.45276 * 160.01377 * 12 11 10 38 38 H 1.09000 * 109.44996 * 279.94387 * 12 11 10 39 39 H 1.09006 * 109.58565 * 28.37963 * 13 12 11 40 40 H 1.09000 * 109.59048 * 148.67148 * 13 12 11 41 41 H 1.09000 * 109.46977 * 180.02562 * 17 15 14 42 42 H 1.08995 * 109.47361 * 60.01028 * 17 15 14 43 43 H 0.97001 * 119.99987 * 359.97438 * 18 17 15 44 44 H 0.97002 * 120.00299 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.46361 * 330.67642 * 27 10 8 46 46 H 1.09007 * 109.44927 * 210.71219 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0568 2.4766 6 7 1.9845 -0.3922 3.7001 7 8 1.0118 1.0873 2.3633 8 6 2.0323 -0.7105 -1.2306 9 8 2.2776 -1.8974 -1.1878 10 7 2.2088 -0.0267 -2.3785 11 6 1.7853 1.3851 -2.4359 12 6 1.0914 1.6985 -3.7696 13 6 0.1993 0.5384 -4.1629 14 8 0.9466 -0.3581 -4.9743 15 6 1.6964 -1.3505 -4.3761 16 1 1.0519 -1.9613 -3.7438 17 6 2.3333 -2.2288 -5.4548 18 7 1.2814 -2.8374 -6.2730 19 6 1.6145 -3.6701 -7.3077 20 1 2.6526 -3.8780 -7.5209 21 6 0.6178 -4.2463 -8.0833 22 7 0.9380 -5.0464 -9.0782 23 14 -1.1778 -3.8862 -7.7151 24 1 -1.6118 -2.6938 -8.4863 25 1 -2.0068 -5.0554 -8.1033 26 1 -1.3421 -3.6233 -6.2628 27 6 2.8079 -0.7075 -3.5115 28 1 -0.3633 0.4634 0.9173 29 1 -0.3633 0.5628 -0.8599 30 1 -0.3634 -1.0259 -0.0573 31 1 1.6053 -1.7199 1.2951 32 1 3.1262 -0.7997 1.2055 33 1 2.4884 -1.2161 3.7907 34 1 1.7283 0.1089 4.4902 35 1 1.0941 1.5850 -1.6172 36 1 2.6605 2.0259 -2.3286 37 1 0.4882 2.6001 -3.6619 38 1 1.8440 1.8559 -4.5421 39 1 -0.1435 0.0210 -3.2668 40 1 -0.6596 0.9108 -4.7211 41 1 2.9251 -3.0128 -4.9823 42 1 2.9777 -1.6181 -6.0870 43 1 0.3490 -2.6510 -6.0813 44 1 0.2415 -5.4493 -9.6200 45 1 3.4837 -1.4838 -3.1528 46 1 3.3660 0.0105 -4.1126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201162375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:27 Heat of formation + Delta-G solvation = -101.402389 kcal Electronic energy + Delta-G solvation = -27471.212811 eV Core-core repulsion = 23589.502741 eV Total energy + Delta-G solvation = -3881.710069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00087 -39.87432 -38.59015 -35.78860 -34.75435 -34.48523 -34.10638 -32.83434 -31.12162 -29.30068 -28.28599 -26.86348 -25.58372 -23.86233 -22.21998 -21.69123 -21.01169 -20.73631 -18.90822 -18.14672 -17.65550 -17.51873 -16.72690 -16.60513 -16.36054 -15.77566 -15.71223 -15.10066 -14.67099 -14.35665 -14.18409 -14.05369 -13.82231 -13.45436 -13.22345 -13.08986 -12.79200 -12.57647 -12.39703 -12.24066 -12.08526 -11.83404 -11.63691 -11.47658 -11.32058 -11.14754 -10.88182 -10.79065 -10.36232 -10.31493 -10.12865 -10.05547 -9.73157 -9.51028 -9.48944 -8.81906 -8.63380 -7.12858 -5.68358 -3.02389 2.21506 2.42800 2.69631 3.18685 3.46342 3.51049 3.52469 3.85642 4.11954 4.36017 4.54858 4.57757 4.65381 4.68326 4.68893 4.88299 5.01267 5.11075 5.22610 5.27241 5.28666 5.30516 5.39524 5.45848 5.52372 5.58014 5.61926 5.69591 5.75496 5.83515 5.90492 5.96966 6.02066 6.04417 6.33338 6.43589 6.59864 6.71735 6.85605 7.13645 7.82141 7.88743 8.00322 8.08067 8.50851 9.30890 10.03540 10.24722 11.50181 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.003135 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.280405 B = 8928.913387 C = 9235.247073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.100 0.900 4 C -0.127 4.127 5 C 0.520 3.480 6 N -0.857 5.857 7 O -0.542 6.542 8 C 0.511 3.489 9 O -0.532 6.532 10 N -0.608 5.608 11 C 0.100 3.900 12 C -0.166 4.166 13 C 0.071 3.929 14 O -0.371 6.371 15 C 0.084 3.916 16 H 0.052 0.948 17 C 0.171 3.829 18 N -0.750 5.750 19 C -0.240 4.240 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.082 3.918 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.403 0.597 34 H 0.401 0.599 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.364 0.636 44 H 0.258 0.742 45 H 0.093 0.907 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 15.780 25.556 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 H 0.118 0.882 4 C -0.168 4.168 5 C 0.306 3.694 6 N -0.420 5.420 7 O -0.419 6.419 8 C 0.299 3.701 9 O -0.408 6.408 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.204 4.204 13 C -0.005 4.005 14 O -0.290 6.290 15 C 0.024 3.976 16 H 0.070 0.930 17 C 0.043 3.957 18 N -0.395 5.395 19 C -0.370 4.370 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.585 5.585 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.204 1.204 27 C -0.041 4.041 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.232 0.768 34 H 0.232 0.768 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.197 0.803 44 H 0.068 0.932 45 H 0.112 0.888 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.377 15.679 24.937 29.552 hybrid contribution -1.079 0.056 0.874 1.390 sum 1.298 15.734 25.812 30.257 Atomic orbital electron populations 1.21928 0.91985 1.02810 1.04030 1.21043 0.98616 1.00596 0.91343 0.88205 1.21495 1.03500 1.00728 0.91053 1.20650 0.78290 0.85246 0.85262 1.43893 1.60218 1.29631 1.08288 1.90722 1.39758 1.24623 1.86761 1.20712 0.77520 0.87318 0.84568 1.90730 1.50372 1.14840 1.84851 1.47934 1.61696 1.12138 1.12350 1.22097 0.99659 0.81176 0.99258 1.22494 1.00818 0.99909 0.97229 1.22142 0.93590 0.89532 0.95266 1.86412 1.62278 1.43729 1.36538 1.22329 0.91859 0.88359 0.95025 0.93040 1.20593 0.91650 0.92868 0.90571 1.42551 1.03425 1.56733 1.36808 1.19064 0.94852 1.18576 1.04460 0.89204 1.24644 0.97407 0.99461 0.97748 1.69708 1.31960 1.35477 1.21343 0.86497 0.86686 0.77333 0.77757 1.21056 1.21893 1.20447 1.22398 0.96775 0.97864 0.87096 0.89487 0.92071 0.92180 0.87420 0.88309 0.76846 0.76829 0.89403 0.91349 0.89580 0.89798 0.93446 0.89301 0.93976 0.94732 0.80264 0.93160 0.88836 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.71 37.16 0.32 -1.08 16 2 C -0.09 -0.88 1.50 -91.77 -0.14 -1.02 16 3 H 0.10 0.85 6.56 -51.93 -0.34 0.51 16 4 C -0.13 -0.99 4.65 -27.88 -0.13 -1.12 16 5 C 0.52 4.08 7.79 -10.99 -0.09 4.00 16 6 N -0.86 -3.70 8.87 31.22 0.28 -3.42 16 7 O -0.54 -6.08 14.82 5.55 0.08 -6.00 16 8 C 0.51 6.29 6.70 -10.98 -0.07 6.22 16 9 O -0.53 -8.42 15.72 5.56 0.09 -8.33 16 10 N -0.61 -7.05 2.19 -172.46 -0.38 -7.43 16 11 C 0.10 0.86 5.66 -3.19 -0.02 0.84 16 12 C -0.17 -1.53 5.79 -27.18 -0.16 -1.68 16 13 C 0.07 0.89 6.38 36.42 0.23 1.13 16 14 O -0.37 -6.30 9.18 -26.55 -0.24 -6.54 16 15 C 0.08 1.45 2.73 -25.78 -0.07 1.38 16 16 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 17 C 0.17 3.53 5.95 -4.04 -0.02 3.51 16 18 N -0.75 -19.17 5.29 -59.91 -0.32 -19.48 16 19 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 20 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 21 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 22 N -0.94 -30.35 13.97 55.49 0.78 -29.57 16 23 Si 0.89 23.33 27.74 -169.99 -4.71 18.61 16 24 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 26 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 27 C 0.08 1.12 4.82 -3.83 -0.02 1.10 16 28 H 0.09 0.85 5.90 -51.93 -0.31 0.55 16 29 H 0.06 0.53 6.88 -51.93 -0.36 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.11 0.85 8.02 -51.92 -0.42 0.43 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 0.73 8.83 -40.82 -0.36 0.37 16 34 H 0.40 1.38 8.93 -40.82 -0.36 1.01 16 35 H 0.09 0.65 4.60 -51.93 -0.24 0.41 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 39 H 0.05 0.60 7.40 -51.93 -0.38 0.21 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.36 9.31 5.39 -40.82 -0.22 9.09 16 44 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 45 H 0.09 1.34 7.36 -51.93 -0.38 0.96 16 46 H 0.08 1.05 8.11 -51.92 -0.42 0.63 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -37.76 362.67 -6.56 -44.32 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.18 Total: 6.39 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.41 Total: 5.98 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.36 Total: -59.90 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.87 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.71 Total: 18.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.76 -6.56 -44.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201162375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.079 kcal (2) G-P(sol) polarization free energy of solvation -37.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds