Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47543 * 2 1 4 4 C 1.53002 * 109.47076 * 120.00407 * 2 1 3 5 5 C 1.50695 * 109.47280 * 294.99690 * 4 2 1 6 6 N 1.34777 * 120.00160 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99669 * 359.97438 * 5 4 2 8 8 C 1.50710 * 109.46799 * 239.99918 * 2 1 3 9 9 O 1.21280 * 119.99997 * 267.49904 * 8 2 1 10 10 N 1.34776 * 119.99521 * 87.49709 * 8 2 1 11 11 C 1.47510 * 118.75883 * 354.42040 * 10 8 2 12 12 C 1.53572 * 111.02944 * 221.65297 * 11 10 8 13 13 C 1.51535 * 109.58139 * 39.97440 * 12 11 10 14 14 O 1.42150 * 108.75703 * 268.60415 * 13 12 11 15 15 C 1.38019 * 119.44680 * 87.22650 * 14 13 12 16 16 H 1.09004 * 109.46105 * 56.57220 * 15 14 13 17 17 C 1.52995 * 109.47199 * 176.57225 * 15 14 13 18 18 N 1.46505 * 109.46858 * 300.01000 * 17 15 14 19 19 C 1.36929 * 119.99708 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00331 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99927 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00184 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00113 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47219 * 90.00096 * 23 21 19 25 25 H 1.48497 * 109.47248 * 210.00224 * 23 21 19 26 26 H 1.48496 * 109.46784 * 329.99933 * 23 21 19 27 27 C 1.45120 * 118.75362 * 174.43857 * 10 8 2 28 28 H 1.09005 * 109.46911 * 296.80260 * 1 2 3 29 29 H 1.09004 * 109.46987 * 56.79765 * 1 2 3 30 30 H 1.08990 * 109.47504 * 176.80473 * 1 2 3 31 31 H 1.09007 * 109.47222 * 54.99537 * 4 2 1 32 32 H 1.08996 * 109.47027 * 174.99318 * 4 2 1 33 33 H 0.96999 * 119.99906 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99911 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.17128 * 342.05206 * 11 10 8 36 36 H 1.09003 * 109.16565 * 101.25186 * 11 10 8 37 37 H 1.09001 * 109.45276 * 160.01377 * 12 11 10 38 38 H 1.09000 * 109.44996 * 279.94387 * 12 11 10 39 39 H 1.09006 * 109.58565 * 28.37963 * 13 12 11 40 40 H 1.09000 * 109.59048 * 148.67148 * 13 12 11 41 41 H 1.09000 * 109.46977 * 180.02562 * 17 15 14 42 42 H 1.08995 * 109.47361 * 60.01028 * 17 15 14 43 43 H 0.97001 * 119.99987 * 359.97438 * 18 17 15 44 44 H 0.97002 * 120.00299 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.46361 * 330.67642 * 27 10 8 46 46 H 1.09007 * 109.44927 * 210.71219 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0568 2.4766 6 7 1.9845 -0.3922 3.7001 7 8 1.0118 1.0873 2.3633 8 6 2.0323 -0.7105 -1.2306 9 8 2.2776 -1.8974 -1.1878 10 7 2.2088 -0.0267 -2.3785 11 6 1.7853 1.3851 -2.4359 12 6 1.0914 1.6985 -3.7696 13 6 0.1993 0.5384 -4.1629 14 8 0.9466 -0.3581 -4.9743 15 6 1.6964 -1.3505 -4.3761 16 1 1.0519 -1.9613 -3.7438 17 6 2.3333 -2.2288 -5.4548 18 7 1.2814 -2.8374 -6.2730 19 6 1.6145 -3.6701 -7.3077 20 1 2.6526 -3.8780 -7.5209 21 6 0.6178 -4.2463 -8.0833 22 7 0.9380 -5.0464 -9.0782 23 14 -1.1778 -3.8862 -7.7151 24 1 -1.6118 -2.6938 -8.4863 25 1 -2.0068 -5.0554 -8.1033 26 1 -1.3421 -3.6233 -6.2628 27 6 2.8079 -0.7075 -3.5115 28 1 -0.3633 0.4634 0.9173 29 1 -0.3633 0.5628 -0.8599 30 1 -0.3634 -1.0259 -0.0573 31 1 1.6053 -1.7199 1.2951 32 1 3.1262 -0.7997 1.2055 33 1 2.4884 -1.2161 3.7907 34 1 1.7283 0.1089 4.4902 35 1 1.0941 1.5850 -1.6172 36 1 2.6605 2.0259 -2.3286 37 1 0.4882 2.6001 -3.6619 38 1 1.8440 1.8559 -4.5421 39 1 -0.1435 0.0210 -3.2668 40 1 -0.6596 0.9108 -4.7211 41 1 2.9251 -3.0128 -4.9823 42 1 2.9777 -1.6181 -6.0870 43 1 0.3490 -2.6510 -6.0813 44 1 0.2415 -5.4493 -9.6200 45 1 3.4837 -1.4838 -3.1528 46 1 3.3660 0.0105 -4.1126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201162375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -131.682355 kcal Electronic energy + Delta-G solvation = -27472.525848 eV Core-core repulsion = 23589.502741 eV Total energy + Delta-G solvation = -3883.023107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.93522 -40.62783 -39.66650 -37.04909 -36.32027 -35.31972 -34.63028 -34.27340 -32.99326 -30.59851 -29.05411 -27.98112 -26.82170 -25.11373 -23.72787 -22.79945 -22.33441 -21.38862 -19.81424 -19.76034 -18.89149 -18.14631 -17.75230 -17.53505 -17.40174 -16.80049 -16.46429 -16.44583 -15.98290 -15.84957 -15.20477 -15.01772 -14.87879 -14.77507 -14.60791 -14.09669 -14.04841 -13.87461 -13.61710 -13.48344 -13.20490 -12.99365 -12.85765 -12.60559 -12.39215 -12.31577 -12.15335 -12.06189 -11.97068 -11.83011 -11.47724 -11.05338 -11.03011 -10.74793 -10.59543 -10.55230 -9.67198 -9.32210 -8.04321 -5.37112 1.35304 1.38781 1.46088 1.48364 1.63174 1.83975 2.46930 2.63827 2.67777 3.27189 3.38521 3.47795 3.66641 3.81785 3.90465 3.95167 4.03655 4.05425 4.13922 4.23761 4.27073 4.35275 4.44078 4.49928 4.61371 4.63196 4.68130 4.71381 4.82541 4.86166 4.90914 4.98490 5.06941 5.10668 5.16760 5.26163 5.50958 5.72197 5.92783 6.19094 6.23608 6.44797 6.69531 7.04984 7.06653 7.34766 7.81348 8.01530 9.17157 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.003135 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.280405 B = 8928.913387 C = 9235.247073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.115 0.885 4 C -0.126 4.126 5 C 0.522 3.478 6 N -0.839 5.839 7 O -0.578 6.578 8 C 0.509 3.491 9 O -0.573 6.573 10 N -0.607 5.607 11 C 0.096 3.904 12 C -0.157 4.157 13 C 0.062 3.938 14 O -0.397 6.397 15 C 0.100 3.900 16 H 0.028 0.972 17 C 0.166 3.834 18 N -0.754 5.754 19 C -0.234 4.234 20 H 0.060 0.940 21 C -0.062 4.062 22 N -0.982 5.982 23 Si 0.957 3.043 24 H -0.276 1.276 25 H -0.291 1.291 26 H -0.263 1.263 27 C 0.093 3.907 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.417 0.583 34 H 0.408 0.592 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.365 0.635 44 H 0.259 0.741 45 H 0.083 0.917 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 18.257 27.676 33.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.133 0.867 4 C -0.166 4.166 5 C 0.307 3.693 6 N -0.403 5.403 7 O -0.458 6.458 8 C 0.298 3.702 9 O -0.452 6.452 10 N -0.339 5.339 11 C -0.025 4.025 12 C -0.195 4.195 13 C -0.014 4.014 14 O -0.316 6.316 15 C 0.040 3.960 16 H 0.046 0.954 17 C 0.039 3.961 18 N -0.399 5.399 19 C -0.365 4.365 20 H 0.078 0.922 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.785 3.215 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.188 1.188 27 C -0.031 4.031 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.248 0.752 34 H 0.240 0.760 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.198 0.802 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.698 18.192 27.125 32.705 hybrid contribution -0.781 -0.709 0.239 1.082 sum 0.917 17.483 27.364 32.485 Atomic orbital electron populations 1.21875 0.91966 1.02089 1.04291 1.21033 0.98436 1.01052 0.90356 0.86722 1.21471 1.04155 1.00355 0.90603 1.20593 0.77938 0.84707 0.86018 1.43747 1.59145 1.29899 1.07508 1.90707 1.41611 1.26155 1.87306 1.21256 0.76631 0.86888 0.85404 1.90712 1.52207 1.16771 1.85558 1.48031 1.61140 1.13297 1.11384 1.22371 1.01070 0.79458 0.99553 1.22432 1.00426 0.99575 0.97094 1.22443 0.94272 0.89772 0.94897 1.86341 1.62899 1.44138 1.38257 1.21942 0.92487 0.88193 0.93377 0.95423 1.20746 0.90918 0.93373 0.91084 1.42574 1.04571 1.56396 1.36383 1.19071 0.93649 1.18603 1.05208 0.92156 1.25465 1.02318 0.99759 0.97856 1.69875 1.33495 1.37090 1.22796 0.85373 0.80562 0.77219 0.78384 1.20183 1.21762 1.18808 1.22122 0.95367 0.98133 0.87495 0.89601 0.91284 0.93460 0.87706 0.87209 0.75239 0.75990 0.87801 0.88923 0.86345 0.90423 0.93747 0.88285 0.94187 0.94414 0.80161 0.93229 0.89851 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.71 71.98 0.63 -1.85 16 2 C -0.09 -1.46 1.50 -11.54 -0.02 -1.48 16 3 H 0.11 1.60 6.56 -2.39 -0.02 1.59 16 4 C -0.13 -1.75 4.65 29.85 0.14 -1.62 16 5 C 0.52 7.23 7.79 87.66 0.68 7.91 16 6 N -0.84 -5.47 8.87 -173.53 -1.54 -7.01 16 7 O -0.58 -11.96 14.82 -3.05 -0.05 -12.01 16 8 C 0.51 11.85 6.70 87.66 0.59 12.43 16 9 O -0.57 -18.04 15.72 -3.03 -0.05 -18.09 16 10 N -0.61 -12.86 2.19 -817.94 -1.79 -14.65 16 11 C 0.10 1.31 5.66 86.38 0.49 1.80 16 12 C -0.16 -2.34 5.79 30.31 0.18 -2.16 16 13 C 0.06 1.41 6.38 71.50 0.46 1.86 16 14 O -0.40 -12.98 9.18 -117.91 -1.08 -14.06 16 15 C 0.10 3.40 2.73 31.21 0.09 3.49 16 16 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 17 C 0.17 6.91 5.95 86.38 0.51 7.42 16 18 N -0.75 -38.79 5.29 -343.46 -1.82 -40.60 16 19 C -0.23 -14.22 10.47 84.03 0.88 -13.34 16 20 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 21 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 22 N -0.98 -65.06 13.97 21.65 0.30 -64.75 16 23 Si 0.96 48.49 27.74 68.60 1.90 50.39 16 24 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.26 -12.50 6.52 99.48 0.65 -11.85 16 27 C 0.09 2.44 4.82 87.25 0.42 2.86 16 28 H 0.09 1.55 5.90 -2.38 -0.01 1.53 16 29 H 0.07 1.04 6.88 -2.39 -0.02 1.03 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.54 8.02 -2.38 -0.02 1.52 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 0.56 8.83 -92.71 -0.82 -0.25 16 34 H 0.41 1.94 8.93 -92.71 -0.83 1.11 16 35 H 0.10 1.13 4.60 -2.39 -0.01 1.11 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.31 8.01 -2.39 -0.02 1.30 16 39 H 0.04 1.03 7.40 -2.38 -0.02 1.01 16 40 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.37 18.48 5.39 -92.71 -0.50 17.98 16 44 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 45 H 0.08 2.36 7.36 -2.39 -0.02 2.35 16 46 H 0.10 2.32 8.11 -2.38 -0.02 2.31 16 Total: -1.00 -83.34 362.67 0.20 -83.13 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -1.18 Total: 23.73 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.51 Total: 13.92 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -4.85 Total: -127.01 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.18 Total: -44.16 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.90 Total: 50.39 kcal Total: -83.34 0.20 -83.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201162375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.549 kcal (2) G-P(sol) polarization free energy of solvation -83.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds