Wall clock time and date at job start Fri Apr 10 2020 18:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00256 * 2 1 4 4 H 1.09008 * 109.46904 * 329.99922 * 3 2 1 5 5 C 1.52997 * 109.47190 * 89.99626 * 3 2 1 6 6 C 1.50699 * 109.47051 * 210.00132 * 3 2 1 7 7 O 1.21274 * 120.00230 * 351.44038 * 6 3 2 8 8 N 1.34772 * 119.99786 * 171.44115 * 6 3 2 9 9 C 1.46931 * 120.63090 * 174.73413 * 8 6 3 10 10 C 1.53194 * 108.89461 * 126.29819 * 9 8 6 11 11 C 1.53359 * 109.14860 * 54.57783 * 10 9 8 12 12 C 1.53043 * 109.60682 * 298.71326 * 11 10 9 13 13 H 1.08994 * 109.49799 * 301.42641 * 12 11 10 14 14 N 1.46893 * 109.52065 * 181.34016 * 12 11 10 15 15 C 1.46902 * 110.99933 * 85.14805 * 14 12 11 16 16 C 1.50707 * 109.47088 * 179.97438 * 15 14 12 17 17 O 1.21291 * 120.00153 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99797 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99674 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00565 * 359.97438 * 19 18 16 21 21 C 1.38956 * 119.99862 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99981 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99942 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46878 * 90.00081 * 23 21 19 25 25 H 1.48492 * 109.47080 * 210.00032 * 23 21 19 26 26 H 1.48499 * 109.47040 * 330.00471 * 23 21 19 27 27 C 1.46928 * 120.63394 * 354.71228 * 8 6 3 28 28 H 1.08998 * 109.46705 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47074 * 300.00191 * 1 2 3 30 30 H 1.08997 * 109.46935 * 60.00138 * 1 2 3 31 31 H 1.09001 * 109.47574 * 305.15591 * 5 3 2 32 32 H 1.09010 * 109.46827 * 65.15180 * 5 3 2 33 33 H 1.08998 * 109.47193 * 185.14816 * 5 3 2 34 34 H 1.09008 * 109.58725 * 246.15797 * 9 8 6 35 35 H 1.08999 * 109.58870 * 6.43592 * 9 8 6 36 36 H 1.09000 * 109.49434 * 174.65572 * 10 9 8 37 37 H 1.08996 * 109.49650 * 294.76109 * 10 9 8 38 38 H 1.08998 * 109.41808 * 178.67624 * 11 10 9 39 39 H 1.09002 * 109.42869 * 58.75409 * 11 10 9 40 40 H 1.00898 * 111.00330 * 321.18607 * 14 12 11 41 41 H 1.08997 * 109.47058 * 299.99908 * 15 14 12 42 42 H 1.09002 * 109.47292 * 59.99837 * 15 14 12 43 43 H 0.96991 * 119.99864 * 359.97438 * 18 16 15 44 44 H 0.96998 * 119.99784 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58494 * 353.41932 * 27 8 6 46 46 H 1.09001 * 109.59092 * 113.69902 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.8202 0.1988 -1.0340 8 7 3.9916 2.4101 -0.9862 9 6 5.3380 2.3821 -1.5737 10 6 5.3431 3.2389 -2.8436 11 6 4.8313 4.6442 -2.5043 12 6 3.3948 4.5557 -1.9836 13 1 2.7621 4.0901 -2.7391 14 7 2.8954 5.9055 -1.6895 15 6 2.3479 6.5388 -2.8966 16 6 1.8458 7.9185 -2.5564 17 8 1.9349 8.3331 -1.4201 18 7 1.2979 8.6915 -3.5149 19 6 0.8417 9.9467 -3.2055 20 1 0.9210 10.3160 -2.1937 21 6 0.2763 10.7436 -4.1935 22 7 -0.1615 11.9466 -3.8969 23 14 0.1384 10.1047 -5.9435 24 1 -1.1597 9.4040 -6.1138 25 1 0.2147 11.2433 -6.8936 26 1 1.2507 9.1587 -6.2141 27 6 3.3704 3.7117 -0.7054 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.2725 1.7142 1.9823 32 1 2.9533 1.1307 1.9290 33 1 2.5753 2.8010 1.4438 34 1 6.0569 2.7833 -0.8592 35 1 5.6061 1.3557 -1.8243 36 1 6.3583 3.3026 -3.2354 37 1 4.6918 2.7856 -3.5908 38 1 4.8552 5.2647 -3.4001 39 1 5.4684 5.0871 -1.7387 40 1 3.6179 6.4766 -1.2774 41 1 3.1282 6.6122 -3.6541 42 1 1.5240 5.9373 -3.2808 43 1 1.2270 8.3600 -4.4237 44 1 -0.5565 12.5026 -4.5865 45 1 2.3391 3.5629 -0.3855 46 1 3.9272 4.2203 0.0816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207546375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:04 Heat of formation + Delta-G solvation = -133.363967 kcal Electronic energy + Delta-G solvation = -26669.080189 eV Core-core repulsion = 22785.984162 eV Total energy + Delta-G solvation = -3883.096027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57199 -40.32823 -39.25984 -38.33511 -36.29774 -35.72270 -34.08861 -33.72480 -32.03750 -31.06628 -27.97433 -27.75153 -26.85584 -25.52535 -24.70340 -23.11032 -21.82313 -21.29303 -20.46925 -20.02764 -18.59423 -17.91649 -17.69507 -17.10134 -16.82695 -16.49113 -16.34513 -15.97874 -15.90009 -15.61158 -15.26337 -15.12177 -14.98403 -14.62049 -14.29832 -14.19077 -14.06316 -13.88391 -13.72245 -13.42166 -13.31061 -13.13648 -12.91195 -12.78201 -12.40293 -12.37734 -12.14661 -12.09556 -11.97603 -11.80842 -11.73551 -11.49371 -11.01328 -10.55079 -10.43153 -10.22897 -9.80337 -9.27051 -8.39850 -6.00430 1.31194 1.36783 1.44540 1.45493 1.66677 1.98230 2.24105 2.65502 2.91907 3.16933 3.33327 3.52864 3.71304 3.83948 3.88196 3.97696 4.00350 4.13079 4.18225 4.29613 4.43282 4.45216 4.49890 4.52548 4.52704 4.58960 4.64588 4.73938 4.81770 4.83421 4.84620 4.89712 4.99365 5.11432 5.17432 5.29520 5.43220 5.54542 5.91431 6.01812 6.03268 6.26779 6.40457 6.61244 6.90275 7.05049 7.42153 7.98518 8.77778 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.002776 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.367342 B =10083.692756 C =10717.807376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.067 3.933 4 H 0.106 0.894 5 C -0.167 4.167 6 C 0.515 3.485 7 O -0.572 6.572 8 N -0.601 5.601 9 C 0.106 3.894 10 C -0.120 4.120 11 C -0.149 4.149 12 C 0.078 3.922 13 H 0.085 0.915 14 N -0.672 5.672 15 C 0.064 3.936 16 C 0.450 3.550 17 O -0.612 6.612 18 N -0.592 5.592 19 C -0.327 4.327 20 H 0.057 0.943 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.258 1.258 25 H -0.278 1.278 26 H -0.230 1.230 27 C 0.116 3.884 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.350 0.650 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.099 0.901 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.268 -22.277 1.249 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C 0.006 3.994 4 H 0.123 0.877 5 C -0.225 4.225 6 C 0.303 3.697 7 O -0.450 6.450 8 N -0.335 5.335 9 C -0.016 4.016 10 C -0.159 4.159 11 C -0.188 4.188 12 C -0.032 4.032 13 H 0.103 0.897 14 N -0.304 5.304 15 C -0.068 4.068 16 C 0.238 3.762 17 O -0.496 6.496 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.075 0.925 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.203 1.203 26 H -0.153 1.153 27 C -0.007 4.007 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.170 0.830 41 H 0.095 0.905 42 H 0.131 0.869 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.974 -22.756 2.022 23.887 hybrid contribution 0.261 0.829 -1.303 1.566 sum 7.235 -21.928 0.719 23.102 Atomic orbital electron populations 1.23094 0.78716 1.04242 1.01380 1.87987 1.21809 1.26287 1.95205 1.22077 0.92604 0.86776 0.97926 0.87677 1.22263 1.04185 1.02581 0.93445 1.20849 0.86995 0.83349 0.78494 1.90668 1.69201 1.30997 1.54159 1.48067 1.17702 1.05586 1.62165 1.21740 0.82629 1.01566 0.95636 1.21845 1.02922 0.94463 0.96636 1.22337 0.96619 0.97617 1.02213 1.21901 0.95177 0.89034 0.97112 0.89701 1.59989 1.40430 1.03228 1.26731 1.21636 1.01160 0.91055 0.92998 1.20969 0.81846 0.88365 0.85043 1.90551 1.60768 1.75680 1.22579 1.42042 1.56183 1.14410 1.10763 1.19008 1.37981 0.91360 0.97264 0.92519 1.26098 0.95786 0.95284 1.04207 1.69802 1.40895 1.10423 1.36506 0.85386 0.80545 0.79221 0.76505 1.18254 1.20278 1.15339 1.21861 0.99882 0.81686 0.97282 0.88307 0.92093 0.93028 0.89562 0.92390 0.89233 0.89771 0.90476 0.88794 0.92088 0.91130 0.90651 0.83016 0.90546 0.86908 0.77531 0.91207 0.88284 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.39 -8.92 9.90 -130.08 -1.29 -10.21 16 3 C 0.07 1.26 2.28 29.85 0.07 1.33 16 4 H 0.11 1.57 6.63 -2.38 -0.02 1.55 16 5 C -0.17 -2.47 9.22 71.98 0.66 -1.80 16 6 C 0.51 12.11 7.05 87.66 0.62 12.73 16 7 O -0.57 -18.47 15.94 15.89 0.25 -18.22 16 8 N -0.60 -10.84 2.97 -818.89 -2.43 -13.28 16 9 C 0.11 1.70 6.43 86.36 0.56 2.26 16 10 C -0.12 -1.58 6.11 30.78 0.19 -1.39 16 11 C -0.15 -2.09 5.14 30.73 0.16 -1.93 16 12 C 0.08 1.31 2.62 45.00 0.12 1.43 16 13 H 0.08 1.42 7.80 -2.39 -0.02 1.40 16 14 N -0.67 -15.87 5.88 -495.17 -2.91 -18.78 16 15 C 0.06 1.68 5.97 85.56 0.51 2.19 16 16 C 0.45 18.75 7.82 87.66 0.69 19.43 16 17 O -0.61 -31.69 15.78 -3.06 -0.05 -31.74 16 18 N -0.59 -26.44 5.09 -306.97 -1.56 -28.01 16 19 C -0.33 -18.53 10.16 84.04 0.85 -17.68 16 20 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 21 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 22 N -0.94 -55.42 13.96 21.66 0.30 -55.12 16 23 Si 0.96 37.56 27.74 68.60 1.90 39.47 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 27 C 0.12 1.79 4.73 86.36 0.41 2.20 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 0.66 7.78 -2.39 -0.02 0.64 16 30 H 0.05 0.64 8.08 -2.39 -0.02 0.63 16 31 H 0.09 1.03 7.78 -2.39 -0.02 1.01 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.09 1.10 6.23 -2.39 -0.01 1.09 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.08 1.52 7.00 -2.39 -0.02 1.51 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.01 7.44 -2.39 -0.02 0.99 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.35 8.91 8.18 -89.70 -0.73 8.17 16 41 H 0.08 1.63 7.43 -2.39 -0.02 1.61 16 42 H 0.11 2.49 8.06 -2.39 -0.02 2.47 16 43 H 0.39 14.28 5.76 -92.71 -0.53 13.75 16 44 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.10 1.44 5.02 -2.39 -0.01 1.43 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -80.51 367.72 0.41 -80.09 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.32 Total: 35.85 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 6.52 Total: 19.94 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -6.60 Total: -115.18 kcal Atomic # 8 Polarization: -59.09 SS G_CDS: -1.08 Total: -60.17 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 1.90 Total: 39.47 kcal Total: -80.51 0.41 -80.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207546375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.269 kcal (2) G-P(sol) polarization free energy of solvation -80.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds