Wall clock time and date at job start Fri Apr 10 2020 18:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99978 * 2 1 4 4 H 1.08994 * 109.47196 * 330.00189 * 3 2 1 5 5 C 1.53002 * 109.46613 * 90.00638 * 3 2 1 6 6 C 1.50695 * 109.46952 * 209.99794 * 3 2 1 7 7 O 1.21286 * 120.00058 * 347.11058 * 6 3 2 8 8 N 1.34775 * 119.99966 * 167.37967 * 6 3 2 9 9 C 1.46924 * 120.62983 * 4.36204 * 8 6 3 10 10 C 1.53190 * 108.77850 * 233.58808 * 9 8 6 11 11 C 1.53035 * 109.31174 * 305.36432 * 10 9 8 12 12 C 1.53041 * 109.53959 * 61.36805 * 11 10 9 13 13 H 1.08992 * 109.49963 * 58.61429 * 12 11 10 14 14 N 1.46898 * 109.50044 * 178.68330 * 12 11 10 15 15 C 1.46902 * 110.99877 * 275.00061 * 14 12 11 16 16 C 1.50698 * 109.47022 * 179.97438 * 15 14 12 17 17 O 1.21297 * 119.99818 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00032 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00023 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99742 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99825 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00090 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99724 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47313 * 90.00203 * 23 21 19 25 25 H 1.48506 * 109.47117 * 209.99392 * 23 21 19 26 26 H 1.48497 * 109.47725 * 329.99827 * 23 21 19 27 27 C 1.46927 * 120.63334 * 184.09003 * 8 6 3 28 28 H 1.09005 * 109.47150 * 59.99214 * 1 2 3 29 29 H 1.08990 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46900 * 299.99771 * 1 2 3 31 31 H 1.08994 * 109.46690 * 174.28418 * 5 3 2 32 32 H 1.09005 * 109.47131 * 294.27471 * 5 3 2 33 33 H 1.08999 * 109.47551 * 54.27515 * 5 3 2 34 34 H 1.09003 * 109.58482 * 353.37967 * 9 8 6 35 35 H 1.09000 * 109.58411 * 113.79802 * 9 8 6 36 36 H 1.08999 * 109.49753 * 65.31748 * 10 9 8 37 37 H 1.09001 * 109.49752 * 185.41328 * 10 9 8 38 38 H 1.09004 * 109.46379 * 181.38707 * 11 10 9 39 39 H 1.09008 * 109.46294 * 301.34403 * 11 10 9 40 40 H 1.00902 * 110.99881 * 151.04116 * 14 12 11 41 41 H 1.08998 * 109.46757 * 299.99935 * 15 14 12 42 42 H 1.08997 * 109.47153 * 59.99661 * 15 14 12 43 43 H 0.96999 * 119.99680 * 359.97438 * 18 16 15 44 44 H 0.97000 * 119.99924 * 180.02562 * 22 21 19 45 45 H 1.09008 * 109.58152 * 246.20006 * 27 8 6 46 46 H 1.08998 * 109.58470 * 6.61876 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2178 1.7712 1.4426 6 6 3.3387 1.2639 -0.7103 7 8 3.8576 0.1974 -0.9639 8 7 3.9526 2.4119 -1.0590 9 6 3.3874 3.7111 -0.6701 10 6 3.2334 4.5772 -1.9243 11 6 4.5803 4.6682 -2.6450 12 6 5.0257 3.2689 -3.0761 13 1 4.2708 2.8321 -3.7297 14 7 6.3032 3.3609 -3.7955 15 6 6.0864 3.6609 -5.2171 16 6 7.4163 3.7480 -5.9206 17 8 8.4436 3.5774 -5.2987 18 7 7.4641 4.0154 -7.2407 19 6 8.6739 4.0941 -7.8808 20 1 9.5887 3.9422 -7.3270 21 6 8.7232 4.3704 -9.2416 22 7 7.6102 4.5557 -9.9152 23 14 10.3717 4.4783 -10.1136 24 1 10.7500 3.1364 -10.6250 25 1 10.2697 5.4300 -11.2491 26 1 11.4059 4.9542 -9.1602 27 6 5.2030 2.3879 -1.8302 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.7527 2.7209 1.4443 32 1 1.2492 1.8990 1.9261 33 1 2.7992 1.0257 1.9851 34 1 2.4120 3.5614 -0.2073 35 1 4.0567 4.2044 0.0347 36 1 2.4950 4.1278 -2.5883 37 1 2.9056 5.5766 -1.6382 38 1 4.4794 5.3041 -3.5246 39 1 5.3242 5.0949 -1.9722 40 1 6.8434 2.5162 -3.6824 41 1 5.4875 2.8698 -5.6681 42 1 5.5626 4.6121 -5.3119 43 1 6.6425 4.1515 -7.7380 44 1 7.6446 4.7482 -10.8653 45 1 6.0173 2.7755 -1.2180 46 1 5.4259 1.3648 -2.1331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207546376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:06 Heat of formation + Delta-G solvation = -138.204990 kcal Electronic energy + Delta-G solvation = -26371.657325 eV Core-core repulsion = 22488.351375 eV Total energy + Delta-G solvation = -3883.305950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58402 -40.24215 -39.23558 -38.26973 -36.47031 -35.81741 -33.50836 -33.25224 -32.72430 -30.87798 -27.93857 -27.74529 -26.89509 -25.86971 -24.30700 -23.55071 -21.46987 -21.16703 -20.25196 -19.90125 -18.60854 -18.06881 -17.62580 -16.94668 -16.93546 -16.49690 -16.39191 -16.16442 -15.82506 -15.62238 -15.41449 -15.27522 -14.95019 -14.68663 -14.24355 -14.14523 -13.87415 -13.71924 -13.52924 -13.42003 -13.30240 -13.15484 -12.90562 -12.77303 -12.43529 -12.38053 -12.13776 -12.12916 -11.86232 -11.81494 -11.65370 -11.52438 -11.00791 -10.54948 -10.37871 -10.03886 -9.78536 -9.42795 -8.48364 -5.97297 1.37028 1.40893 1.43667 1.53899 1.63885 2.02093 2.28108 2.79870 2.96247 3.18493 3.37196 3.45316 3.73483 3.81994 3.90762 3.97947 4.05465 4.05994 4.23708 4.27608 4.41634 4.44951 4.48072 4.52842 4.54920 4.62439 4.66405 4.74063 4.76326 4.82337 4.86468 4.98239 5.05783 5.18190 5.22814 5.32577 5.39552 5.44684 5.85297 6.03664 6.05592 6.27490 6.34068 6.57659 7.04783 7.10437 7.53280 8.08495 8.69094 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029068 B = 0.002250 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.043142 B =12442.609759 C =12616.380405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.073 3.927 4 H 0.118 0.882 5 C -0.170 4.170 6 C 0.505 3.495 7 O -0.580 6.580 8 N -0.602 5.602 9 C 0.094 3.906 10 C -0.128 4.128 11 C -0.109 4.109 12 C 0.081 3.919 13 H 0.042 0.958 14 N -0.671 5.671 15 C 0.068 3.932 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.273 1.273 27 C 0.116 3.884 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.343 0.657 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.443 1.148 20.991 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.012 3.988 4 H 0.135 0.865 5 C -0.227 4.227 6 C 0.294 3.706 7 O -0.459 6.459 8 N -0.336 5.336 9 C -0.027 4.027 10 C -0.166 4.166 11 C -0.147 4.147 12 C -0.030 4.030 13 H 0.060 0.940 14 N -0.304 5.304 15 C -0.064 4.064 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.007 4.007 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.161 0.839 41 H 0.078 0.922 42 H 0.126 0.874 43 H 0.230 0.770 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.325 1.005 21.245 28.737 hybrid contribution 0.254 -0.853 -1.509 1.752 sum -19.071 0.152 19.736 27.445 Atomic orbital electron populations 1.23103 0.78470 1.04170 1.01660 1.88024 1.22096 1.26620 1.95220 1.22089 0.91652 0.86923 0.98117 0.86483 1.22347 1.04876 1.02547 0.92959 1.21248 0.87556 0.83180 0.78595 1.90700 1.67357 1.31483 1.56348 1.48098 1.24613 1.06906 1.53948 1.22333 1.01047 0.81506 0.97781 1.21947 0.96415 1.01796 0.96478 1.21568 0.97647 0.94520 1.00981 1.21978 0.89832 0.97446 0.93699 0.94013 1.60166 1.17767 1.43048 1.09411 1.21554 0.93317 1.03019 0.88550 1.20813 0.91812 0.82405 0.82449 1.90495 1.37461 1.56509 1.66404 1.41926 1.08968 1.62554 1.07510 1.19670 0.86672 1.47587 0.92450 0.90315 1.26060 1.02467 0.96159 0.96637 1.69670 1.28256 1.48236 1.09928 0.84916 0.77220 0.78480 0.77643 1.19698 1.19384 1.19741 1.21628 0.86605 0.99933 0.92561 0.92776 0.88905 0.91390 0.88695 0.88458 0.92925 0.86556 0.88968 0.91463 0.87257 0.91851 0.91043 0.83855 0.92217 0.87434 0.76963 0.91244 0.89887 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.46 16 2 O -0.40 -8.38 9.91 -130.27 -1.29 -9.67 16 3 C 0.07 1.13 2.28 29.85 0.07 1.20 16 4 H 0.12 1.00 6.85 -2.39 -0.02 0.99 16 5 C -0.17 -1.64 9.10 71.98 0.66 -0.99 16 6 C 0.51 12.22 7.04 87.66 0.62 12.84 16 7 O -0.58 -20.77 15.98 15.67 0.25 -20.52 16 8 N -0.60 -11.59 2.97 -818.06 -2.43 -14.02 16 9 C 0.09 0.91 5.19 86.36 0.45 1.36 16 10 C -0.13 -1.36 6.08 30.67 0.19 -1.17 16 11 C -0.11 -2.03 5.39 30.62 0.17 -1.86 16 12 C 0.08 1.96 2.66 45.14 0.12 2.08 16 13 H 0.04 1.06 7.80 -2.39 -0.02 1.04 16 14 N -0.67 -21.74 5.93 -494.44 -2.93 -24.68 16 15 C 0.07 2.40 5.97 85.56 0.51 2.91 16 16 C 0.44 21.28 7.82 87.66 0.69 21.97 16 17 O -0.62 -35.21 15.78 -3.08 -0.05 -35.26 16 18 N -0.57 -29.89 5.29 -306.98 -1.62 -31.51 16 19 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 23 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 27 C 0.12 2.82 5.72 86.51 0.49 3.32 16 28 H 0.05 0.46 8.09 -2.38 -0.02 0.44 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.40 8.01 -2.39 -0.02 0.38 16 31 H 0.09 0.55 6.02 -2.39 -0.01 0.53 16 32 H 0.10 0.45 8.01 -2.38 -0.02 0.43 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.12 0.44 4.77 -2.39 -0.01 0.42 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 1.27 7.43 -2.38 -0.02 1.25 16 39 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.34 12.08 8.07 -89.69 -0.72 11.36 16 41 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 42 H 0.11 3.35 7.42 -2.39 -0.02 3.33 16 43 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 44 H 0.28 14.13 8.31 -92.71 -0.77 13.35 16 45 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.06 1.94 7.03 -2.39 -0.02 1.93 16 Total: -1.00 -80.24 370.93 0.24 -80.00 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -0.45 Total: 35.60 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 6.46 Total: 24.41 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -6.70 Total: -119.98 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -1.09 Total: -65.45 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -80.24 0.24 -80.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207546376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.208 kcal (2) G-P(sol) polarization free energy of solvation -80.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds