Wall clock time and date at job start Fri Apr 10 2020 18:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00286 * 2 1 4 4 C 1.50701 * 109.47344 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99989 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00057 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99916 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47189 * 325.00222 * 7 6 4 9 9 C 1.53006 * 109.47263 * 85.00068 * 7 6 4 10 10 C 1.50702 * 109.47083 * 204.99996 * 7 6 4 11 11 O 1.21277 * 119.99860 * 343.20398 * 10 7 6 12 12 N 1.34772 * 119.99999 * 163.20503 * 10 7 6 13 13 C 1.46926 * 120.63132 * 174.78678 * 12 10 7 14 14 C 1.53198 * 108.77658 * 126.38897 * 13 12 10 15 15 C 1.53035 * 109.31098 * 54.63280 * 14 13 12 16 16 C 1.53035 * 109.54362 * 298.63824 * 15 14 13 17 17 H 1.09009 * 109.49486 * 301.38045 * 16 15 14 18 18 N 1.46494 * 109.50233 * 181.31822 * 16 15 14 19 19 C 1.36941 * 120.00443 * 84.99342 * 18 16 15 20 20 H 1.08002 * 119.99597 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00264 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00290 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47511 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47266 * 120.00011 * 23 21 19 26 26 H 1.48504 * 109.46818 * 239.99664 * 23 21 19 27 27 C 1.46922 * 120.63274 * 354.78344 * 12 10 7 28 28 H 1.08998 * 109.47463 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46412 * 300.00309 * 1 2 3 30 30 H 1.08992 * 109.46865 * 60.00008 * 1 2 3 31 31 H 1.08996 * 109.46992 * 59.99866 * 3 2 1 32 32 H 1.09002 * 109.46744 * 299.99896 * 3 2 1 33 33 H 0.97001 * 120.00486 * 359.97438 * 6 4 3 34 34 H 1.09007 * 109.46836 * 294.00886 * 9 7 6 35 35 H 1.08997 * 109.46964 * 54.00486 * 9 7 6 36 36 H 1.08996 * 109.47210 * 174.00751 * 9 7 6 37 37 H 1.09004 * 109.58398 * 6.60286 * 13 12 10 38 38 H 1.09001 * 109.58713 * 246.17723 * 13 12 10 39 39 H 1.08999 * 109.49888 * 294.68510 * 14 13 12 40 40 H 1.09003 * 109.49499 * 174.58945 * 14 13 12 41 41 H 1.09011 * 109.45992 * 58.65945 * 15 14 13 42 42 H 1.09002 * 109.46102 * 178.62692 * 15 14 13 43 43 H 0.97002 * 120.00024 * 265.00083 * 18 16 15 44 44 H 0.96998 * 120.00316 * 180.02562 * 22 21 19 45 45 H 1.08993 * 109.59015 * 113.82315 * 27 12 10 46 46 H 1.08999 * 109.70396 * 353.46725 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 5.7370 2.1810 -0.0013 8 1 6.0327 1.3134 0.5885 9 6 6.2354 2.0146 -1.4383 10 6 6.3395 3.4253 0.5985 11 8 5.6710 4.4314 0.7062 12 7 7.6212 3.4200 1.0151 13 6 8.2572 4.6541 1.4961 14 6 8.8470 4.3955 2.8861 15 6 9.7858 3.1887 2.8210 16 6 8.9972 1.9491 2.3927 17 1 8.1901 1.7681 3.1027 18 7 9.8901 0.7882 2.3611 19 6 10.1304 0.0776 3.5068 20 1 9.6612 0.3729 4.4337 21 6 10.9769 -1.0220 3.4770 22 7 11.5491 -1.3816 2.3476 23 14 11.3039 -1.9916 5.0398 24 1 10.5467 -1.3870 6.1651 25 1 10.8692 -3.3988 4.8495 26 1 12.7564 -1.9596 5.3473 27 6 8.4091 2.1800 0.9971 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8595 3.1725 -0.0017 34 1 5.8859 1.0618 -1.8361 35 1 5.8501 2.8282 -2.0529 36 1 7.3251 2.0353 -1.4496 37 1 7.5134 5.4487 1.5567 38 1 9.0524 4.9466 0.8103 39 1 8.0411 4.1918 3.5911 40 1 9.4044 5.2730 3.2137 41 1 10.5777 3.3832 2.0975 42 1 10.2257 3.0174 3.8035 43 1 10.3113 0.5228 1.5286 44 1 12.1403 -2.1503 2.3266 45 1 9.2166 2.2707 0.2708 46 1 7.7677 1.3409 0.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208150857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:15 Heat of formation + Delta-G solvation = -99.690771 kcal Electronic energy + Delta-G solvation = -26933.789119 eV Core-core repulsion = 23052.153271 eV Total energy + Delta-G solvation = -3881.635848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69419 -39.57406 -37.81488 -37.37105 -35.08326 -34.39043 -32.72400 -31.53374 -30.86916 -28.71704 -28.31132 -26.20190 -25.73696 -23.86852 -23.83568 -21.93967 -20.72223 -20.17157 -19.19233 -17.98537 -17.37325 -16.90759 -16.68973 -16.53911 -15.81777 -15.61419 -15.19695 -14.79834 -14.67225 -14.45059 -14.07449 -13.92056 -13.60210 -13.36592 -13.29675 -13.05030 -12.90183 -12.63828 -12.40642 -12.34371 -12.20817 -11.76542 -11.71169 -11.16949 -10.98874 -10.93233 -10.72488 -10.47512 -10.43915 -10.11291 -10.08889 -9.95064 -9.77530 -9.73810 -9.28604 -8.95878 -8.54921 -7.04292 -5.81856 -3.11970 2.34403 2.48740 2.56597 3.07201 3.41923 3.48154 3.49892 3.81317 4.29053 4.51616 4.58054 4.77221 4.82975 4.97403 4.98162 5.00808 5.05819 5.10871 5.20150 5.22842 5.35802 5.39764 5.47160 5.52990 5.56178 5.66950 5.73952 5.79663 5.90212 6.02258 6.05733 6.16060 6.27289 6.33618 6.37026 6.59983 6.66540 6.77878 6.96219 7.32516 7.37866 7.66962 8.02430 8.08641 8.35739 9.47611 10.00649 10.35693 11.40480 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.003594 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.941397 B = 7788.051008 C = 9515.524990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.046 3.954 4 C 0.514 3.486 5 O -0.512 6.512 6 N -0.714 5.714 7 C 0.124 3.876 8 H 0.118 0.882 9 C -0.158 4.158 10 C 0.517 3.483 11 O -0.551 6.551 12 N -0.596 5.596 13 C 0.113 3.887 14 C -0.132 4.132 15 C -0.138 4.138 16 C 0.168 3.832 17 H 0.051 0.949 18 N -0.721 5.721 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.093 3.907 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.409 0.591 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.074 0.926 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 11.979 -7.216 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.034 4.034 4 C 0.299 3.701 5 O -0.385 6.385 6 N -0.370 5.370 7 C 0.016 3.984 8 H 0.136 0.864 9 C -0.216 4.216 10 C 0.304 3.696 11 O -0.430 6.430 12 N -0.328 5.328 13 C -0.009 4.009 14 C -0.171 4.171 15 C -0.178 4.178 16 C 0.057 3.943 17 H 0.069 0.931 18 N -0.362 5.362 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.219 1.219 27 C -0.030 4.030 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.245 0.755 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.724 11.422 -6.981 21.422 hybrid contribution 0.130 -0.001 0.644 0.657 sum -16.594 11.421 -6.337 21.118 Atomic orbital electron populations 1.22843 0.80335 1.03390 1.00086 1.88036 1.19792 1.25057 1.95419 1.22189 0.91358 0.87098 1.02791 1.20245 0.88730 0.84437 0.76719 1.90787 1.74385 1.26275 1.47063 1.45639 1.05536 1.09597 1.76249 1.20838 0.80768 0.97831 0.98973 0.86398 1.22108 1.02285 1.03455 0.93769 1.20453 0.81803 0.89502 0.77796 1.90633 1.60293 1.34800 1.57271 1.48044 1.11330 1.10961 1.62503 1.21659 0.97313 0.86390 0.95586 1.21929 0.99745 0.99424 0.96040 1.22291 0.98205 0.94744 1.02595 1.20471 0.92769 0.88116 0.92982 0.93064 1.42306 1.53636 1.30015 1.10235 1.19229 1.22627 1.06833 0.88490 0.91083 1.24740 0.99983 0.98859 0.97043 1.69657 1.34796 1.28768 1.24598 0.86127 0.77560 0.80010 0.82534 1.20534 1.21747 1.21853 1.22334 0.95716 0.84834 1.00082 0.89021 0.93761 0.93834 0.90032 0.90114 0.75458 0.90513 0.91781 0.90523 0.89377 0.91413 0.91907 0.91288 0.92378 0.91444 0.78149 0.93449 0.90804 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.37 -4.31 10.24 -55.14 -0.56 -4.88 16 3 C 0.05 0.43 6.42 36.01 0.23 0.66 16 4 C 0.51 6.70 7.87 -10.99 -0.09 6.61 16 5 O -0.51 -9.11 16.16 -14.35 -0.23 -9.34 16 6 N -0.71 -8.29 5.03 -54.93 -0.28 -8.57 16 7 C 0.12 1.61 2.13 -69.08 -0.15 1.46 16 8 H 0.12 1.77 5.94 -51.93 -0.31 1.46 16 9 C -0.16 -1.79 9.27 37.16 0.34 -1.44 16 10 C 0.52 7.26 6.96 -10.99 -0.08 7.18 16 11 O -0.55 -8.53 15.30 5.56 0.09 -8.45 16 12 N -0.60 -8.26 2.97 -172.77 -0.51 -8.77 16 13 C 0.11 1.43 6.44 -3.71 -0.02 1.41 16 14 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 15 C -0.14 -2.28 5.46 -26.69 -0.15 -2.43 16 16 C 0.17 3.12 2.92 -67.82 -0.20 2.92 16 17 H 0.05 1.03 8.08 -51.92 -0.42 0.61 16 18 N -0.72 -17.07 5.12 -53.31 -0.27 -17.35 16 19 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 23 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 C 0.09 1.42 4.95 -3.71 -0.02 1.40 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.41 4.01 7.72 -40.82 -0.32 3.69 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.83 7.22 -51.93 -0.38 0.46 16 37 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.38 9.60 7.80 -40.82 -0.32 9.28 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 1.36 5.36 -51.93 -0.28 1.08 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -33.86 374.80 -7.26 -41.12 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.42 Total: 9.95 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 0.58 Total: 10.17 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.34 Total: -61.37 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.71 Total: -22.67 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.86 -7.26 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208150857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.569 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds