Wall clock time and date at job start Fri Apr 10 2020 18:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00286 * 2 1 4 4 C 1.50701 * 109.47344 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99989 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00057 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99916 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47189 * 325.00222 * 7 6 4 9 9 C 1.53006 * 109.47263 * 85.00068 * 7 6 4 10 10 C 1.50702 * 109.47083 * 204.99996 * 7 6 4 11 11 O 1.21277 * 119.99860 * 343.20398 * 10 7 6 12 12 N 1.34772 * 119.99999 * 163.20503 * 10 7 6 13 13 C 1.46926 * 120.63132 * 174.78678 * 12 10 7 14 14 C 1.53198 * 108.77658 * 126.38897 * 13 12 10 15 15 C 1.53035 * 109.31098 * 54.63280 * 14 13 12 16 16 C 1.53035 * 109.54362 * 298.63824 * 15 14 13 17 17 H 1.09009 * 109.49486 * 301.38045 * 16 15 14 18 18 N 1.46494 * 109.50233 * 181.31822 * 16 15 14 19 19 C 1.36941 * 120.00443 * 84.99342 * 18 16 15 20 20 H 1.08002 * 119.99597 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00264 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00290 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47511 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47266 * 120.00011 * 23 21 19 26 26 H 1.48504 * 109.46818 * 239.99664 * 23 21 19 27 27 C 1.46922 * 120.63274 * 354.78344 * 12 10 7 28 28 H 1.08998 * 109.47463 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46412 * 300.00309 * 1 2 3 30 30 H 1.08992 * 109.46865 * 60.00008 * 1 2 3 31 31 H 1.08996 * 109.46992 * 59.99866 * 3 2 1 32 32 H 1.09002 * 109.46744 * 299.99896 * 3 2 1 33 33 H 0.97001 * 120.00486 * 359.97438 * 6 4 3 34 34 H 1.09007 * 109.46836 * 294.00886 * 9 7 6 35 35 H 1.08997 * 109.46964 * 54.00486 * 9 7 6 36 36 H 1.08996 * 109.47210 * 174.00751 * 9 7 6 37 37 H 1.09004 * 109.58398 * 6.60286 * 13 12 10 38 38 H 1.09001 * 109.58713 * 246.17723 * 13 12 10 39 39 H 1.08999 * 109.49888 * 294.68510 * 14 13 12 40 40 H 1.09003 * 109.49499 * 174.58945 * 14 13 12 41 41 H 1.09011 * 109.45992 * 58.65945 * 15 14 13 42 42 H 1.09002 * 109.46102 * 178.62692 * 15 14 13 43 43 H 0.97002 * 120.00024 * 265.00083 * 18 16 15 44 44 H 0.96998 * 120.00316 * 180.02562 * 22 21 19 45 45 H 1.08993 * 109.59015 * 113.82315 * 27 12 10 46 46 H 1.08999 * 109.70396 * 353.46725 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0342 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 5.7370 2.1810 -0.0013 8 1 6.0327 1.3134 0.5885 9 6 6.2354 2.0146 -1.4383 10 6 6.3395 3.4253 0.5985 11 8 5.6710 4.4314 0.7062 12 7 7.6212 3.4200 1.0151 13 6 8.2572 4.6541 1.4961 14 6 8.8470 4.3955 2.8861 15 6 9.7858 3.1887 2.8210 16 6 8.9972 1.9491 2.3927 17 1 8.1901 1.7681 3.1027 18 7 9.8901 0.7882 2.3611 19 6 10.1304 0.0776 3.5068 20 1 9.6612 0.3729 4.4337 21 6 10.9769 -1.0220 3.4770 22 7 11.5491 -1.3816 2.3476 23 14 11.3039 -1.9916 5.0398 24 1 10.5467 -1.3870 6.1651 25 1 10.8692 -3.3988 4.8495 26 1 12.7564 -1.9596 5.3473 27 6 8.4091 2.1800 0.9971 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8595 3.1725 -0.0017 34 1 5.8859 1.0618 -1.8361 35 1 5.8501 2.8282 -2.0529 36 1 7.3251 2.0353 -1.4496 37 1 7.5134 5.4487 1.5567 38 1 9.0524 4.9466 0.8103 39 1 8.0411 4.1918 3.5911 40 1 9.4044 5.2730 3.2137 41 1 10.5777 3.3832 2.0975 42 1 10.2257 3.0174 3.8035 43 1 10.3113 0.5228 1.5286 44 1 12.1403 -2.1503 2.3266 45 1 9.2166 2.2707 0.2708 46 1 7.7677 1.3409 0.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208150857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:14 Heat of formation + Delta-G solvation = -124.667235 kcal Electronic energy + Delta-G solvation = -26934.872180 eV Core-core repulsion = 23052.153271 eV Total energy + Delta-G solvation = -3882.718909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81243 -40.63554 -38.91264 -38.38026 -36.23265 -36.03114 -34.02950 -33.19416 -31.96320 -30.00333 -29.42662 -27.03525 -26.72629 -25.74975 -24.94459 -23.23428 -21.87118 -21.40754 -20.39294 -19.34678 -18.84792 -18.01117 -17.71619 -17.29487 -16.91123 -16.80007 -16.40886 -16.20569 -15.73303 -15.63788 -15.48303 -15.21997 -15.04789 -14.76293 -14.39148 -14.24162 -14.05661 -13.67448 -13.56953 -13.36482 -13.14319 -12.96027 -12.89174 -12.72040 -12.38358 -12.35090 -12.22993 -12.09897 -11.86345 -11.76348 -11.57430 -11.08182 -10.99537 -10.82368 -10.76450 -10.32593 -9.76366 -9.02060 -7.95415 -5.23943 1.27820 1.46830 1.48151 1.48990 1.54465 1.57128 2.02762 2.55769 3.09494 3.16903 3.38042 3.65462 3.85266 3.87773 3.93660 4.00611 4.04778 4.09412 4.18067 4.26560 4.33958 4.35092 4.51135 4.53208 4.57391 4.58538 4.71412 4.72906 4.80777 4.88075 4.91309 5.01621 5.08075 5.09732 5.19031 5.36199 5.43815 5.49115 5.56789 6.02303 6.19034 6.27870 6.43549 6.89023 7.11921 7.34001 8.05896 8.30294 9.27606 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.003594 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.941397 B = 7788.051008 C = 9515.524990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.049 3.951 4 C 0.509 3.491 5 O -0.569 6.569 6 N -0.702 5.702 7 C 0.123 3.877 8 H 0.094 0.906 9 C -0.150 4.150 10 C 0.522 3.478 11 O -0.561 6.561 12 N -0.595 5.595 13 C 0.112 3.888 14 C -0.122 4.122 15 C -0.129 4.129 16 C 0.164 3.836 17 H 0.033 0.967 18 N -0.732 5.732 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.966 3.034 24 H -0.269 1.269 25 H -0.295 1.295 26 H -0.292 1.292 27 C 0.108 3.892 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.420 0.580 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.086 0.914 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 14.164 -7.382 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.030 4.030 4 C 0.297 3.703 5 O -0.447 6.447 6 N -0.359 5.359 7 C 0.014 3.986 8 H 0.112 0.888 9 C -0.209 4.209 10 C 0.310 3.690 11 O -0.441 6.441 12 N -0.327 5.327 13 C -0.009 4.009 14 C -0.160 4.160 15 C -0.169 4.169 16 C 0.054 3.946 17 H 0.051 0.949 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.796 3.204 24 H -0.194 1.194 25 H -0.223 1.223 26 H -0.219 1.219 27 C -0.016 4.016 28 H 0.111 0.889 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.209 0.791 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.090 13.697 -7.131 23.785 hybrid contribution 0.460 -0.595 0.709 1.034 sum -17.630 13.101 -6.422 22.885 Atomic orbital electron populations 1.23041 0.78140 1.04157 1.01760 1.87977 1.22283 1.26649 1.95819 1.22332 0.88200 0.86884 1.05629 1.21049 0.90499 0.83622 0.75179 1.90760 1.75674 1.28359 1.49883 1.45580 1.04930 1.10006 1.75366 1.20770 0.81772 0.96433 0.99579 0.88817 1.22052 1.02570 1.03529 0.92726 1.20500 0.81606 0.89456 0.77475 1.90629 1.60395 1.35241 1.57801 1.48024 1.11288 1.10797 1.62545 1.21801 0.97956 0.85763 0.95420 1.21848 0.98906 0.98723 0.96550 1.22100 0.98546 0.95036 1.01233 1.20638 0.91751 0.87397 0.94791 0.94910 1.42427 1.54408 1.31369 1.09000 1.19521 1.21381 1.06566 0.89415 0.91132 1.25457 1.00759 1.00315 0.99716 1.69788 1.35974 1.29357 1.26346 0.85181 0.77207 0.78273 0.79754 1.19367 1.22272 1.21903 1.22035 0.96005 0.85584 0.97971 0.88887 0.92278 0.91863 0.87420 0.86611 0.74090 0.91497 0.90147 0.90065 0.88733 0.89406 0.92732 0.88543 0.92027 0.93652 0.79090 0.93985 0.89576 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.27 10.24 -129.94 -1.33 -10.60 16 3 C 0.05 0.82 6.42 71.24 0.46 1.27 16 4 C 0.51 13.05 7.87 87.66 0.69 13.74 16 5 O -0.57 -20.92 16.16 15.99 0.26 -20.66 16 6 N -0.70 -15.57 5.03 -446.08 -2.24 -17.82 16 7 C 0.12 3.14 2.13 44.25 0.09 3.23 16 8 H 0.09 2.91 5.94 -2.39 -0.01 2.89 16 9 C -0.15 -3.28 9.27 71.98 0.67 -2.62 16 10 C 0.52 13.83 6.96 87.66 0.61 14.44 16 11 O -0.56 -16.09 15.30 -3.02 -0.05 -16.14 16 12 N -0.59 -15.50 2.97 -818.91 -2.43 -17.94 16 13 C 0.11 2.53 6.44 86.36 0.56 3.09 16 14 C -0.12 -2.96 6.08 30.67 0.19 -2.77 16 15 C -0.13 -4.15 5.46 30.62 0.17 -3.98 16 16 C 0.16 6.10 2.92 45.07 0.13 6.23 16 17 H 0.03 1.34 8.08 -2.38 -0.02 1.32 16 18 N -0.73 -35.20 5.12 -322.58 -1.65 -36.85 16 19 C -0.24 -12.91 9.93 84.03 0.83 -12.08 16 20 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 22 N -0.96 -57.91 13.06 21.65 0.28 -57.63 16 23 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 C 0.11 3.21 4.95 86.36 0.43 3.64 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.42 7.37 7.72 -92.71 -0.72 6.66 16 34 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.68 7.22 -2.39 -0.02 1.66 16 37 H 0.09 2.11 7.00 -2.39 -0.02 2.09 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.38 19.17 7.80 -92.71 -0.72 18.45 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.08 2.62 5.36 -2.39 -0.01 2.61 16 Total: -1.00 -74.65 374.80 0.95 -73.69 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.44 Total: 33.51 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 6.54 Total: 22.27 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -6.05 Total: -130.24 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -1.12 Total: -47.40 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.65 0.95 -73.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208150857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.974 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds