Wall clock time and date at job start Fri Apr 10 2020 18:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00073 * 2 1 4 4 H 1.08996 * 110.64605 * 26.84415 * 3 2 1 5 5 C 1.54928 * 110.72358 * 263.49577 * 3 2 1 6 6 N 1.48527 * 103.22950 * 204.23017 * 5 3 2 7 7 C 1.46908 * 111.00397 * 159.72274 * 6 5 3 8 8 C 1.50693 * 109.47252 * 183.58725 * 7 6 5 9 9 O 1.21293 * 120.00330 * 354.04026 * 8 7 6 10 10 N 1.34779 * 119.99683 * 174.03584 * 8 7 6 11 11 C 1.37098 * 119.99924 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00002 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00283 * 180.02562 * 11 10 8 14 14 N 1.31415 * 120.00234 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99927 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47073 * 89.99924 * 15 13 11 17 17 H 1.48497 * 109.47058 * 209.99896 * 15 13 11 18 18 H 1.48507 * 109.46901 * 330.00025 * 15 13 11 19 19 C 1.48127 * 105.82459 * 39.26659 * 6 5 3 20 20 C 1.53993 * 106.94189 * 334.59072 * 19 6 5 21 21 H 1.08995 * 110.31090 * 120.26735 * 20 19 6 22 22 N 1.46496 * 110.31117 * 242.33798 * 20 19 6 23 23 C 1.34777 * 120.00381 * 272.21285 * 22 20 19 24 24 O 1.21284 * 119.99592 * 359.97438 * 23 22 20 25 25 C 1.50694 * 120.00405 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47140 * 180.02562 * 25 23 22 27 27 C 1.53007 * 109.46879 * 299.99620 * 25 23 22 28 28 H 1.09002 * 109.47065 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47134 * 300.00378 * 1 2 3 30 30 H 1.09004 * 109.46861 * 60.00091 * 1 2 3 31 31 H 1.09001 * 110.66984 * 322.66823 * 5 3 2 32 32 H 1.09000 * 110.67036 * 85.62440 * 5 3 2 33 33 H 1.08999 * 109.46680 * 303.58758 * 7 6 5 34 34 H 1.08997 * 109.47140 * 63.58606 * 7 6 5 35 35 H 0.96997 * 120.00372 * 0.02562 * 10 8 7 36 36 H 0.97003 * 119.99920 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.94701 * 215.29330 * 19 6 5 38 38 H 1.08996 * 109.99741 * 93.92413 * 19 6 5 39 39 H 0.97002 * 120.00109 * 92.20472 * 22 20 19 40 40 H 1.08997 * 109.47443 * 59.99439 * 25 23 22 41 41 H 1.09001 * 109.47324 * 179.97438 * 26 25 23 42 42 H 1.08999 * 109.46977 * 299.99657 * 26 25 23 43 43 H 1.08997 * 109.47488 * 59.99371 * 26 25 23 44 44 H 1.09001 * 109.47068 * 180.02562 * 27 25 23 45 45 H 1.08997 * 109.46935 * 300.00130 * 27 25 23 46 46 H 1.08996 * 109.46743 * 60.00296 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3352 2.0267 0.4606 5 6 2.3832 1.7395 -1.4397 6 7 3.4569 2.7430 -1.2248 7 6 4.2634 2.9197 -2.4400 8 6 5.3932 3.8763 -2.1584 9 8 5.4532 4.4461 -1.0893 10 7 6.3371 4.0986 -3.0944 11 6 7.3652 4.9685 -2.8381 12 1 7.4191 5.4753 -1.8859 13 6 8.3380 5.1981 -3.8032 14 7 9.3233 6.0323 -3.5577 15 14 8.2446 4.3220 -5.4504 16 1 7.4576 5.1441 -6.4043 17 1 9.6161 4.1225 -5.9834 18 1 7.5856 3.0031 -5.2729 19 6 4.2829 2.2188 -0.1125 20 6 3.3767 1.2958 0.7231 21 1 3.7849 0.2855 0.7470 22 7 3.2354 1.8185 2.0843 23 6 4.1304 1.4789 3.0330 24 8 5.0526 0.7401 2.7598 25 6 3.9847 2.0161 4.4333 26 6 5.1224 1.4817 5.3056 27 6 4.0419 3.5448 4.4016 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.7584 0.8913 -2.0123 32 1 1.5261 2.1905 -1.9398 33 1 4.6708 1.9570 -2.7487 34 1 3.6371 3.3214 -3.2364 35 1 6.2890 3.6431 -3.9495 36 1 10.0022 6.1929 -4.2317 37 1 4.6428 3.0428 0.5037 38 1 5.1256 1.6523 -0.5089 39 1 2.4976 2.4092 2.3028 40 1 3.0282 1.6969 4.8473 41 1 5.0173 1.8706 6.3184 42 1 5.0821 0.3927 5.3282 43 1 6.0787 1.8013 4.8915 44 1 3.9369 3.9334 5.4146 45 1 4.9983 3.8640 3.9877 46 1 3.2316 3.9258 3.7801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211859273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:23 Heat of formation + Delta-G solvation = -104.592317 kcal Electronic energy + Delta-G solvation = -27067.370524 eV Core-core repulsion = 23185.522130 eV Total energy + Delta-G solvation = -3881.848395 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40764 -39.18554 -38.24777 -36.67382 -34.54454 -34.42927 -33.86060 -31.68223 -30.55103 -28.29220 -27.36431 -27.13465 -26.08040 -24.23815 -23.30795 -21.52544 -20.90619 -19.85065 -19.33073 -18.26142 -17.48469 -17.11669 -16.38696 -15.96472 -15.48433 -15.38937 -15.04095 -15.01930 -14.79091 -14.17497 -14.07168 -13.87894 -13.53388 -13.36861 -12.95209 -12.85543 -12.63432 -12.39056 -12.33560 -12.18867 -12.01148 -11.92613 -11.84589 -11.66116 -11.35085 -11.28735 -11.18521 -11.03209 -10.91502 -10.58807 -10.03624 -9.96238 -9.66103 -9.55169 -9.06526 -8.59983 -8.19410 -8.11635 -6.30161 -3.81514 2.66291 3.00968 3.03746 3.07570 3.15909 3.40099 3.73958 4.08766 4.12422 4.33190 4.55116 4.61771 4.75280 4.79040 4.81345 4.85435 5.02954 5.09294 5.21322 5.21713 5.29551 5.39764 5.42445 5.48968 5.52241 5.60816 5.61902 5.70639 5.70824 5.74357 5.79510 5.89696 5.98258 6.06505 6.15247 6.28955 6.56909 6.80801 7.00002 7.06619 7.46061 7.58660 8.14798 8.24030 8.60566 8.95838 9.43008 9.83164 10.82940 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.003696 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.628109 B = 7574.955973 C = 9260.996725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.081 3.919 4 H 0.083 0.917 5 C 0.015 3.985 6 N -0.488 5.488 7 C 0.033 3.967 8 C 0.451 3.549 9 O -0.560 6.560 10 N -0.590 5.590 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.881 5.881 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.270 1.270 19 C 0.039 3.961 20 C 0.135 3.865 21 H 0.104 0.896 22 N -0.718 5.718 23 C 0.518 3.482 24 O -0.535 6.535 25 C -0.113 4.113 26 C -0.133 4.133 27 C -0.146 4.146 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.399 0.601 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.889 -10.840 9.548 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.021 3.979 4 H 0.101 0.899 5 C -0.114 4.114 6 N -0.213 5.213 7 C -0.099 4.099 8 C 0.237 3.763 9 O -0.441 6.441 10 N -0.230 5.230 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.090 4.090 20 C 0.030 3.970 21 H 0.122 0.878 22 N -0.370 5.370 23 C 0.304 3.696 24 O -0.411 6.411 25 C -0.134 4.134 26 C -0.191 4.191 27 C -0.204 4.204 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.071 0.929 39 H 0.234 0.766 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.062 -10.541 10.135 23.239 hybrid contribution -0.144 -0.855 -1.733 1.938 sum -18.205 -11.396 8.401 23.063 Atomic orbital electron populations 1.22814 0.80826 1.02807 1.00111 1.87947 1.19864 1.26897 1.94862 1.23239 0.94312 0.84796 0.95507 0.89917 1.23646 0.96644 0.94846 0.96283 1.64634 1.10708 1.40903 1.05097 1.22152 0.95526 0.98884 0.93305 1.19574 0.84272 0.86601 0.85900 1.90548 1.76750 1.52186 1.24642 1.42196 1.24189 1.41524 1.15040 1.19421 1.00393 1.19316 1.04136 0.86276 1.25031 0.95747 0.97068 0.98270 1.69623 1.12770 1.34640 1.35080 0.86677 0.78637 0.79806 0.84307 1.19600 1.20167 1.19526 1.23333 0.94252 0.98147 0.93246 1.21901 0.94429 0.99208 0.81497 0.87835 1.45989 1.30343 1.51027 1.09642 1.20720 0.81610 0.80324 0.86938 1.90715 1.31812 1.36350 1.82231 1.21295 1.01795 0.97635 0.92683 1.21617 0.97888 1.01436 0.98146 1.21812 1.03350 0.92548 1.02674 0.89601 0.93972 0.93766 0.92446 0.89444 0.93050 0.88742 0.79713 0.91618 0.87486 0.92934 0.76633 0.88804 0.92136 0.92093 0.91662 0.91486 0.91501 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.32 16 2 O -0.38 -4.18 10.44 -35.23 -0.37 -4.54 16 3 C 0.08 0.90 3.27 -24.87 -0.08 0.82 16 4 H 0.08 0.78 7.42 -51.93 -0.39 0.40 16 5 C 0.01 0.18 6.28 -1.91 -0.01 0.17 16 6 N -0.49 -7.73 5.12 -231.71 -1.19 -8.91 16 7 C 0.03 0.56 5.30 -4.97 -0.03 0.53 16 8 C 0.45 10.32 7.39 -10.99 -0.08 10.24 16 9 O -0.56 -14.91 14.10 5.55 0.08 -14.83 16 10 N -0.59 -14.20 5.09 -10.97 -0.06 -14.26 16 11 C -0.30 -8.67 10.16 -14.93 -0.15 -8.83 16 12 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 14 N -0.88 -25.96 13.96 55.50 0.77 -25.19 16 15 Si 0.88 19.58 27.74 -169.99 -4.71 14.86 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 19 C 0.04 0.66 5.19 -2.63 -0.01 0.64 16 20 C 0.14 1.85 3.08 -66.57 -0.20 1.65 16 21 H 0.10 1.60 7.53 -51.93 -0.39 1.21 16 22 N -0.72 -8.56 4.91 -52.49 -0.26 -8.81 16 23 C 0.52 7.00 7.15 -10.99 -0.08 6.92 16 24 O -0.54 -9.55 15.66 5.55 0.09 -9.47 16 25 C -0.11 -1.10 3.26 -91.77 -0.30 -1.40 16 26 C -0.13 -1.35 8.48 37.16 0.32 -1.04 16 27 C -0.15 -1.32 9.09 37.16 0.34 -0.98 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.11 2.15 6.82 -51.93 -0.35 1.80 16 38 H 0.05 0.98 7.72 -51.93 -0.40 0.58 16 39 H 0.40 3.61 7.78 -40.82 -0.32 3.29 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -35.26 374.43 -6.80 -42.06 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -7.51 Total: 12.35 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 0.70 Total: 11.10 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.73 Total: -57.18 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.20 Total: -28.84 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.26 -6.80 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211859273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.531 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds